mRNA_P-littoralis_Contig664.7.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig664.7.1
Unique NamemRNA_P-littoralis_Contig664.7.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig664.7.1 vs. uniprot
Match: A0A6H5K6I9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6I9_9PHAE)

HSP 1 Score: 134 bits (336), Expect = 4.580e-36
Identity = 67/78 (85.90%), Postives = 73/78 (93.59%), Query Frame = 1
Query:   31 ILEHRFAHIRAGLGTLRNPTAAQAKERSVRGDLNRGLHGGSRANFNRNARSGDDFNVSDYRAKIMLAVSEAETAENVR 264
            ILEHRF  +RAGLGTLRNPTAAQAKERSVRGDLNRGLHGGSRANFNRNARSG+DF  SDYR++IMLAV++AE AENVR
Sbjct:  239 ILEHRFKDVRAGLGTLRNPTAAQAKERSVRGDLNRGLHGGSRANFNRNARSGNDFIDSDYRSRIMLAVTQAEAAENVR 316          
BLAST of mRNA_P-littoralis_Contig664.7.1 vs. uniprot
Match: D7FZI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI2_ECTSI)

HSP 1 Score: 131 bits (330), Expect = 1.040e-33
Identity = 66/72 (91.67%), Postives = 69/72 (95.83%), Query Frame = 1
Query:   49 AHIRAGLGTLRNPTAAQAKERSVRGDLNRGLHGGSRANFNRNARSGDDFNVSDYRAKIMLAVSEAETAENVR 264
            AHIRAGLGTLRNPTAAQAKERSVRGDLNRGLHGGSRANFNRNARSGDDFNVSDYR +IMLAV++A  AENVR
Sbjct:  917 AHIRAGLGTLRNPTAAQAKERSVRGDLNRGLHGGSRANFNRNARSGDDFNVSDYRGRIMLAVTQAVAAENVR 988          
BLAST of mRNA_P-littoralis_Contig664.7.1 vs. uniprot
Match: A0A6H5L2C2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2C2_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 6.740e-27
Identity = 53/86 (61.63%), Postives = 64/86 (74.42%), Query Frame = 1
Query:    7 RGAPRQRDILEHRFAHIRAGLGTLRNPTAAQAKERSVRGDLNRGLHGGSRANFNRNARSGDDFNVSDYRAKIMLAVSEAETAENVR 264
            RGA RQRD +EHRF H R GLG+ RNPTA QAKER+ RGDLNRGL GGSRAN NR +R G+DF  S  R +I+L V++ E +  +R
Sbjct:   60 RGASRQRDPVEHRFGHTRQGLGSHRNPTATQAKERAARGDLNRGLQGGSRANHNRTSRKGNDFIASGVRGQIILPVTDEERSATMR 145          
BLAST of mRNA_P-littoralis_Contig664.7.1 vs. uniprot
Match: A0A6H5JR14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR14_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 2.550e-23
Identity = 49/79 (62.03%), Postives = 59/79 (74.68%), Query Frame = 1
Query:   28 DILEHRFAHIRAGLGTLRNPTAAQAKERSVRGDLNRGLHGGSRANFNRNARSGDDFNVSDYRAKIMLAVSEAETAENVR 264
            D++EH F H+R GLG+ RNPTAAQAKER  RGD+ RGLHG  RAN+NRNAR G DF  S YRA++ML V E E +  +R
Sbjct:  660 DVIEHCFGHMRQGLGSHRNPTAAQAKERGARGDILRGLHGPCRANYNRNARKGRDFVASGYRAEVMLPVGEGERSVRIR 738          
BLAST of mRNA_P-littoralis_Contig664.7.1 vs. uniprot
Match: A0A6H5K5X1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5X1_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 3.460e-18
Identity = 43/79 (54.43%), Postives = 56/79 (70.89%), Query Frame = 1
Query:   28 DILEHRFAHIRAGLGTLRNPTAAQAKERSVRGDLNRGLHGGSRANFNRNARSGDDFNVSDYRAKIMLAVSEAETAENVR 264
            DI EHR+ H+  GLG+  NPT A+AKER+ RGDL R LHG SRA  N+NAR G+DF  S  R +I+L V++AE +  +R
Sbjct:  530 DIEEHRYGHMHQGLGSHSNPTCAEAKERAERGDLQRSLHGVSRAKHNQNARKGEDFIASGIRGRIILPVTDAERSATMR 608          
BLAST of mRNA_P-littoralis_Contig664.7.1 vs. uniprot
Match: A0A6H5K630_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K630_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 7.730e-18
Identity = 41/70 (58.57%), Postives = 51/70 (72.86%), Query Frame = 1
Query:   55 IRAGLGTLRNPTAAQAKERSVRGDLNRGLHGGSRANFNRNARSGDDFNVSDYRAKIMLAVSEAETAENVR 264
            +R GLG+ RNPTA QAKER+ RGDLNRGL GGSRAN NR +R G DF  S  R +I+L V++ E +  +R
Sbjct:    1 MRQGLGSHRNPTATQAKERAARGDLNRGLRGGSRANHNRTSRKGSDFIASGVRGQIILPVTDEERSATMR 70          
BLAST of mRNA_P-littoralis_Contig664.7.1 vs. uniprot
Match: A0A6H5KB63_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB63_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 7.350e-17
Identity = 40/70 (57.14%), Postives = 50/70 (71.43%), Query Frame = 1
Query:   55 IRAGLGTLRNPTAAQAKERSVRGDLNRGLHGGSRANFNRNARSGDDFNVSDYRAKIMLAVSEAETAENVR 264
            +R  LG+  NP AAQAKER+ RGDL R LHG SRAN N+NAR G+DF  S  R +IML V++AE +  +R
Sbjct:    1 MRQSLGSHSNPIAAQAKERTARGDLQRSLHGVSRANHNKNARKGEDFIASGIRGRIMLPVTDAERSATMR 70          
BLAST of mRNA_P-littoralis_Contig664.7.1 vs. uniprot
Match: A0A6H5K5I6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5I6_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 1.510e-14
Identity = 46/83 (55.42%), Postives = 55/83 (66.27%), Query Frame = 1
Query:   28 DILEHRFAHIRAGLGTLRNPTAAQAKERSVRGDLNRGLHGGSRANFNRN--ARSGDDFNVSDYRAK--IMLAVSEAETAENVR 264
            DI EHRF+HIRA LGT RNPTA +AK+RS  GDL R  +G  R N +RN  ARSG DF       K  I+LAV++ ET + VR
Sbjct:  180 DICEHRFSHIRAALGTHRNPTAREAKKRSAVGDLCRATNGKRRRNASRNPNARSGGDFEEHGDSEKKAIILAVTKVETGKEVR 262          
BLAST of mRNA_P-littoralis_Contig664.7.1 vs. uniprot
Match: A0A6H5JTX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTX6_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 1.880e-12
Identity = 38/67 (56.72%), Postives = 46/67 (68.66%), Query Frame = 1
Query:   28 DILEHRFAHIRAGLGTLRNPTAAQAKERSVRGDLNRGLHGGSRANFNRNARSGDDFNVSDYRAKIML 228
            DI+EHR+ H+   LG+  NPTAAQAKER+ + DL R LHG SRAN    AR G+DF  S  R +IML
Sbjct:  145 DIVEHRYGHMCQCLGSHCNPTAAQAKERAAQEDLQRSLHGISRANH---ARKGEDFIASGIRGRIML 208          
BLAST of mRNA_P-littoralis_Contig664.7.1 vs. uniprot
Match: A0A6H5K7Z3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z3_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 3.620e-8
Identity = 37/80 (46.25%), Postives = 48/80 (60.00%), Query Frame = 1
Query:   28 DILEHRFAHIRAGLGTLRNPTAAQAKERSVRGDLNRGLHGGSRANFNRNARSGDDFNVSDYRA-KIMLAVSEAETAENVR 264
            DILEHRFAHIR+G GT +NPTA QA E +  GD  R  HG  R N +R+A  G  F + D +  +     + +E A+ VR
Sbjct:  576 DILEHRFAHIRSGRGTHKNPTAMQAIEAARAGDTARMFHGTRRRNSSRSA--GMAFQLEDSQGVRAAFPANASERAQVVR 653          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig664.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5K6I9_9PHAE4.580e-3685.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZI2_ECTSI1.040e-3391.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L2C2_9PHAE6.740e-2761.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JR14_9PHAE2.550e-2362.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5X1_9PHAE3.460e-1854.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K630_9PHAE7.730e-1858.57Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KB63_9PHAE7.350e-1757.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5I6_9PHAE1.510e-1455.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTX6_9PHAE1.880e-1256.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7Z3_9PHAE3.620e-846.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig664contigP-littoralis_Contig664:12383..12924 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size266
Hectar predicted targeting categoryother localisation
Exons2
Cds size264
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791384.706848-CDS-P-littoralis_Contig664:12383..126201680791384.706848-CDS-P-littoralis_Contig664:12383..12620Pylaiella littoralis U1_48CDSP-littoralis_Contig664 12384..12620 -
1680791384.720632-CDS-P-littoralis_Contig664:12897..129241680791384.720632-CDS-P-littoralis_Contig664:12897..12924Pylaiella littoralis U1_48CDSP-littoralis_Contig664 12898..12924 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig664.7.1prot_P-littoralis_Contig664.7.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig664 12384..12924 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig664.7.1

>prot_P-littoralis_Contig664.7.1 ID=prot_P-littoralis_Contig664.7.1|Name=mRNA_P-littoralis_Contig664.7.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=88bp
ESRGAPRQRDILEHRFAHIRAGLGTLRNPTAAQAKERSVRGDLNRGLHGG
SRANFNRNARSGDDFNVSDYRAKIMLAVSEAETAENVR
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mRNA from alignment at P-littoralis_Contig664:12383..12924-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig664.7.1 ID=mRNA_P-littoralis_Contig664.7.1|Name=mRNA_P-littoralis_Contig664.7.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=542bp|location=Sequence derived from alignment at P-littoralis_Contig664:12383..12924- (Pylaiella littoralis U1_48)
GAAAGCAGGGGGGCTCCGCGCCAACGTGTGAGTGGAATTTCTCGTGTCAC CGAGACAATGTTGCGTCTATACGCCCTTTGGGTCAGCTGTTCTTGCTGTT GTTTGACTTGGCGCGGAACGGTAAACCCAGACACCGACGATGAGCTCCGG CCCTCCTAACCCCTCCCCCCCCACACACACACACACACACTTTGCGGACC ACATGTTGCACAAGGTGGAGGACTCCGACAGCGCCGCAACCCCTGCGTCC ATCTATGTAGTATCTAAATCTATGCCGCCATCCCCCCCGCCCTTACCGCC ACAGGACATTCTCGAACACCGGTTTGCCCACATCCGTGCGGGGTTGGGGA CATTGAGGAACCCCACGGCGGCACAGGCGAAGGAGAGGTCCGTACGCGGC GACCTCAACCGAGGTCTACATGGAGGTTCACGGGCGAACTTCAACCGCAA CGCGCGGTCCGGCGATGACTTCAACGTCTCCGATTACAGGGCCAAAATCA TGTTGGCAGTATCAGAGGCGGAGACCGCCGAGAATGTTCGCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig664:12383..12924-

>mRNA_P-littoralis_Contig664.7.1 ID=mRNA_P-littoralis_Contig664.7.1|Name=mRNA_P-littoralis_Contig664.7.1|organism=Pylaiella littoralis U1_48|type=CDS|length=264bp|location=Sequence derived from alignment at P-littoralis_Contig664:12383..12924- (Pylaiella littoralis U1_48)
GAAAGCAGGGGGGCTCCGCGCCAACGTGACATTCTCGAACACCGGTTTGC
CCACATCCGTGCGGGGTTGGGGACATTGAGGAACCCCACGGCGGCACAGG
CGAAGGAGAGGTCCGTACGCGGCGACCTCAACCGAGGTCTACATGGAGGT
TCACGGGCGAACTTCAACCGCAACGCGCGGTCCGGCGATGACTTCAACGT
CTCCGATTACAGGGCCAAAATCATGTTGGCAGTATCAGAGGCGGAGACCG
CCGAGAATGTTCGC
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