mRNA_P-littoralis_Contig663.47.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig663.47.1
Unique NamemRNA_P-littoralis_Contig663.47.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig663.47.1 vs. uniprot
Match: A0A6H5KAF3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAF3_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 1.430e-24
Identity = 58/161 (36.02%), Postives = 91/161 (56.52%), Query Frame = 1 
Query:   76 KRGEDEPTMFMV---RFESLF-----RSMELEDTFCRTVPIKVGMLSREELYGQFQRREVDASYKAWNLLLNSVVDVAMMVRITAEGSPSGGWSAFKNYYTPQADAEKERVRQEWYDLRQGMNEAPQQFFSRATVLESKLCRHGILMEERETNTHVIRRLS 534
            K+GEDE   F++      ++F     R +EL +     +P+    +S EEL        V+ +  +WNLL+ SV  + ++ +I A+GSPSGGW  F NYY P+A AEKER+  +++ L   + E PQ +F R  VL S+L  HG++  + + N H++  LS
Sbjct:   15 KQGEDEQAKFLIFRSNMVAMFAQEGGRDVELTE---EKIPVGKEGVSMEELPRVHSSDSVEKTITSWNLLITSVTYMPILTQIIADGSPSGGWKIFLNYYEPRARAEKERLSSQYHGLEMKVGETPQDYFGRFAVLRSRLAPHGVIFSDEDANAHMVYHLS 172
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig663.47.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KAF3_9PHAE1.430e-2436.02Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig663contigP-littoralis_Contig663:150759..151328 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size570
Hectar predicted targeting categoryother localisation
Exons1
Cds size570
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791384.3466654-CDS-P-littoralis_Contig663:150758..1513281680791384.3466654-CDS-P-littoralis_Contig663:150758..151328Pylaiella littoralis U1_48CDSP-littoralis_Contig663 150759..151328 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig663.47.1prot_P-littoralis_Contig663.47.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig663 150759..151328 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig663.47.1

>prot_P-littoralis_Contig663.47.1 ID=prot_P-littoralis_Contig663.47.1|Name=mRNA_P-littoralis_Contig663.47.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=190bp
RTGTTPYQGSTVSTYSQGSRVEFTGKRGEDEPTMFMVRFESLFRSMELED
TFCRTVPIKVGMLSREELYGQFQRREVDASYKAWNLLLNSVVDVAMMVRI
TAEGSPSGGWSAFKNYYTPQADAEKERVRQEWYDLRQGMNEAPQQFFSRA
TVLESKLCRHGILMEERETNTHVIRRLSSLFHTQAEILRQ
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mRNA from alignment at P-littoralis_Contig663:150759..151328+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig663.47.1 ID=mRNA_P-littoralis_Contig663.47.1|Name=mRNA_P-littoralis_Contig663.47.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=570bp|location=Sequence derived from alignment at P-littoralis_Contig663:150759..151328+ (Pylaiella littoralis U1_48)
AGAACGGGGACTACGCCCTATCAGGGGTCGACGGTTAGCACGTATAGTCA
AGGGAGCAGAGTAGAATTCACTGGGAAGAGGGGGGAAGATGAGCCAACAA
TGTTCATGGTGCGGTTTGAGTCTTTGTTTCGATCTATGGAGTTGGAAGAT
ACTTTTTGCAGGACAGTACCGATCAAGGTAGGCATGCTGTCCAGGGAGGA
ATTGTACGGGCAATTTCAGAGGCGTGAGGTAGACGCTTCTTACAAGGCTT
GGAATCTGCTCCTGAACAGTGTGGTGGACGTCGCAATGATGGTTAGGATT
ACGGCAGAAGGTAGTCCCAGTGGAGGGTGGTCTGCGTTCAAAAACTACTA
CACTCCGCAGGCTGATGCTGAAAAAGAAAGAGTTCGCCAAGAATGGTATG
ATTTGCGTCAGGGAATGAACGAAGCACCGCAGCAGTTTTTCTCCAGGGCG
ACAGTGCTGGAAAGCAAACTCTGTAGACATGGGATCTTAATGGAGGAGAG
AGAAACAAACACACATGTAATTCGCCGTTTGTCGTCGCTGTTTCACACGC
AAGCCGAAATTTTGCGCCAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig663:150759..151328+

>mRNA_P-littoralis_Contig663.47.1 ID=mRNA_P-littoralis_Contig663.47.1|Name=mRNA_P-littoralis_Contig663.47.1|organism=Pylaiella littoralis U1_48|type=CDS|length=570bp|location=Sequence derived from alignment at P-littoralis_Contig663:150759..151328+ (Pylaiella littoralis U1_48)
AGAACGGGGACTACGCCCTATCAGGGGTCGACGGTTAGCACGTATAGTCA
AGGGAGCAGAGTAGAATTCACTGGGAAGAGGGGGGAAGATGAGCCAACAA
TGTTCATGGTGCGGTTTGAGTCTTTGTTTCGATCTATGGAGTTGGAAGAT
ACTTTTTGCAGGACAGTACCGATCAAGGTAGGCATGCTGTCCAGGGAGGA
ATTGTACGGGCAATTTCAGAGGCGTGAGGTAGACGCTTCTTACAAGGCTT
GGAATCTGCTCCTGAACAGTGTGGTGGACGTCGCAATGATGGTTAGGATT
ACGGCAGAAGGTAGTCCCAGTGGAGGGTGGTCTGCGTTCAAAAACTACTA
CACTCCGCAGGCTGATGCTGAAAAAGAAAGAGTTCGCCAAGAATGGTATG
ATTTGCGTCAGGGAATGAACGAAGCACCGCAGCAGTTTTTCTCCAGGGCG
ACAGTGCTGGAAAGCAAACTCTGTAGACATGGGATCTTAATGGAGGAGAG
AGAAACAAACACACATGTAATTCGCCGTTTGTCGTCGCTGTTTCACACGC
AAGCCGAAATTTTGCGCCAA
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