mRNA_P-littoralis_Contig662.1.10 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig662.1.10
Unique NamemRNA_P-littoralis_Contig662.1.10
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig662.1.10 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig662contigP-littoralis_Contig662:45977..47804 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size396
Hectar predicted targeting categoryother localisation
Exons3
Cds size315
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791383.478865-UTR-P-littoralis_Contig662:45976..460421680791383.478865-UTR-P-littoralis_Contig662:45976..46042Pylaiella littoralis U1_48UTRP-littoralis_Contig662 45977..46042 +
1680791383.5263472-UTR-P-littoralis_Contig662:47789..478041680791383.5263472-UTR-P-littoralis_Contig662:47789..47804Pylaiella littoralis U1_48UTRP-littoralis_Contig662 47790..47804 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791383.4891815-CDS-P-littoralis_Contig662:46042..461081680791383.4891815-CDS-P-littoralis_Contig662:46042..46108Pylaiella littoralis U1_48CDSP-littoralis_Contig662 46043..46108 +
1680791383.5024557-CDS-P-littoralis_Contig662:46568..467841680791383.5024557-CDS-P-littoralis_Contig662:46568..46784Pylaiella littoralis U1_48CDSP-littoralis_Contig662 46569..46784 +
1680791383.5126684-CDS-P-littoralis_Contig662:47756..477891680791383.5126684-CDS-P-littoralis_Contig662:47756..47789Pylaiella littoralis U1_48CDSP-littoralis_Contig662 47757..47789 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig662.1.10prot_P-littoralis_Contig662.1.10Pylaiella littoralis U1_48polypeptideP-littoralis_Contig662 46043..47789 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig662.1.10

>prot_P-littoralis_Contig662.1.10 ID=prot_P-littoralis_Contig662.1.10|Name=mRNA_P-littoralis_Contig662.1.10|organism=Pylaiella littoralis U1_48|type=polypeptide|length=105bp
MRPTHRRRGSGSGSIGVRSVSREKYTVASVLDGGDGEALAALVKRSSENQ
LVAKSEKVVGQSVGSGGGGGGGGTTKSKSKSKRGHVRNNPSSGSQSRWPF
GSSR*
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mRNA from alignment at P-littoralis_Contig662:45977..47804+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig662.1.10 ID=mRNA_P-littoralis_Contig662.1.10|Name=mRNA_P-littoralis_Contig662.1.10|organism=Pylaiella littoralis U1_48|type=mRNA|length=1828bp|location=Sequence derived from alignment at P-littoralis_Contig662:45977..47804+ (Pylaiella littoralis U1_48)
AGTTTCGGGTCGTCGGAGTGTACTGTTACTCCCGGAGGGTCCGGTTCCAT
CGGCAGCTTCGGGGGAATGCGTCCGACGCACAGGAGGCGCGGCAGCGGGA
GCGGCAGTATAGGCGTCCGTTCCGTTAGTCGGGTGAGTTTTTTTTGTGTG
AAATGAAAAGAGGCGTGTGTAAAATTAAAAGAGGCCGGTCTCAGATCAAG
AGCCAGCATAATGTGATCCGACAATAATCTGGACGGCTACCCGTGGGCAC
GTGGCTCGAACACTTCGTATCCAGTACATAGCATGTAATGTACTTCGTAT
GTATTATGTATGTCGTATGTATGTTATGATGTATGTATCTATGTATCTAT
GTATTTTGGTGGGACCCCGGTTGGTGCACCCACTTCATACCGAAAGGTGT
CGACCTGTGCCCAGAATAGTTGGGCCGAAAACAAACACAAAGACAGGCAG
CCCTGTGCGATGACTATTACCGGTAACTCCGAGTCGTACGATGACTCCCA
CCCTTAGTTCCCAAAACCTCGTGTGAGGAGTTACGCTGACGTTACGCACG
GCGGTCGTGGGTGTGACATGACGTGATGTGATGTGCCTACAGGAGAAGTA
CACCGTGGCTTCCGTGTTGGACGGAGGGGACGGCGAGGCTCTCGCCGCCC
TCGTAAAGAGGTCGTCCGAAAACCAGCTTGTCGCCAAGAGCGAGAAGGTG
GTCGGGCAAAGCGTCGGCAGCGGCGGCGGCGGCGGCGGCGGCGGCACCAC
CAAGAGCAAGAGCAAGAGCAAGAGGGGTCACGTGCGCAACAATCCTTCTT
CGGGATCGGTAAGTCACGGCCCCCCCCCCTCCCAGGCACACACGCGCGTG
CACCCGCGACGCCACAAACCGGTGAAGGTGCCGAAGTCAAACGACCCCCC
CCCCCCCCTTCGGACACATACACACCTTACACTCACTATCATGCTTTGGG
GGACGGGACGATTCTGCTACGCGAACGCAGGACTTAGATGAAATGCAATG
ATTTGACACGAAAGAACCATGCTTAAACAAACCATCATCACCAGGCAAAG
GGGGCATCGCATCAATCATCGCTTTGCGAGCCAGTACTTGAAAGGCCTCA
TTCGACCCCAGCACCACACTTTCGTGTTTCCCATTTGAAGCTATTCCCAC
CGGAATAAACCAGGGGGGTCCTAGAATGGGAAGTATTACGAAGTACTCCG
TATATGATACCGCGGTATTCAACCGCGGTGTTCACCCTCTGCAGCAATGC
GCAGTATTTTTTGGGCGGCAGTCGGCCGTCTCGGTACAATAACCACGGAC
GATCTTGCACCTGTCGATTTCTCAAAATTACAGCAGTACGTGGGGTACAG
TATGATGTTGCTCCTTGCAAACACTCTTGCGACCACGGCTTCGAGACATT
GAACTACTGTAATATGTATGTCGGAAACAAAAACAGCAATCAATGAGGAC
AATAATAACATTTCGAAAAGGAAATACTGATAATGATATCATCGTCATCA
ATAATAATAAAATGATGATACGAAGTACGTACCAAGTAAATAAGAAAAGC
AACAATACCCGGAAGTATTTGAAGAGCTCATCACGAAAACTAAAACGGGT
CCACACCGTTGTCAAAACTGTCTCCAGCAGTAGTCGGTTGCTGCTTTTTC
TTTTTTTCCACACGCGTACCGCTGTACAGCAGTACTGGTACAAGACACAA
CAGGAAAAAATACAAGTTCAACACGTTGCCTGCCCCCCCCCCCCTCCTCC
CGCTGACATTTTTTCTTTTTTCTTTCGCAGCAGTCTCGCTGGCCTTTCGG
GAGCAGTCGATAGGGTGGCGTTTTCTGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig662:45977..47804+

>mRNA_P-littoralis_Contig662.1.10 ID=mRNA_P-littoralis_Contig662.1.10|Name=mRNA_P-littoralis_Contig662.1.10|organism=Pylaiella littoralis U1_48|type=CDS|length=315bp|location=Sequence derived from alignment at P-littoralis_Contig662:45977..47804+ (Pylaiella littoralis U1_48)
ATGCGTCCGACGCACAGGAGGCGCGGCAGCGGGAGCGGCAGTATAGGCGT
CCGTTCCGTTAGTCGGGAGAAGTACACCGTGGCTTCCGTGTTGGACGGAG
GGGACGGCGAGGCTCTCGCCGCCCTCGTAAAGAGGTCGTCCGAAAACCAG
CTTGTCGCCAAGAGCGAGAAGGTGGTCGGGCAAAGCGTCGGCAGCGGCGG
CGGCGGCGGCGGCGGCGGCACCACCAAGAGCAAGAGCAAGAGCAAGAGGG
GTCACGTGCGCAACAATCCTTCTTCGGGATCGCAGTCTCGCTGGCCTTTC
GGGAGCAGTCGATAG
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