mRNA_P-littoralis_Contig661.71.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig661.71.1
Unique NamemRNA_P-littoralis_Contig661.71.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig661.71.1 vs. uniprot
Match: A0A6H5JBA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA3_9PHAE)

HSP 1 Score: 200 bits (509), Expect = 1.240e-57
Identity = 94/117 (80.34%), Postives = 108/117 (92.31%), Query Frame = 2 
Query:    2 LPVIAAYMLCGTDFTPTFFGLTSHFMFKSYYDYITNPTNHQFLKALGENAIKDGAVSGVALVREEVIKFVALAYYKKHQALFLHPLGHQVEPTLDPKKRNGAIDETKAWVAAIHVRT 352
            LPVIAAYMLCGTDFTPTFFG TS FMF+SY++Y+ NP NH+FLKALGE+A+KDGAV+GVAL REE+IKFVALAY+KK+QA FL+P GHQVEP +DPKKRNGA+DETKAWV AIHVRT
Sbjct:  576 LPVIAAYMLCGTDFTPTFFGFTSFFMFQSYFEYVKNPENHRFLKALGEHAVKDGAVAGVALEREELIKFVALAYFKKYQASFLYPPGHQVEPIVDPKKRNGAVDETKAWVDAIHVRT 692
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BLAST of mRNA_P-littoralis_Contig661.71.1 vs. uniprot
Match: A0A6H5KQE5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQE5_9PHAE)

HSP 1 Score: 200 bits (509), Expect = 2.570e-57
Identity = 94/117 (80.34%), Postives = 108/117 (92.31%), Query Frame = 2 
Query:    2 LPVIAAYMLCGTDFTPTFFGLTSHFMFKSYYDYITNPTNHQFLKALGENAIKDGAVSGVALVREEVIKFVALAYYKKHQALFLHPLGHQVEPTLDPKKRNGAIDETKAWVAAIHVRT 352
            LPVIAAYMLCGTDFTPTFFG TS FMF+SY++Y+ NP NH+FLKALGE+A+KDGAV+GVAL REE+IKFVALAY+KK+QA FL+P GHQVEP +DPKKRNGA+DETKAWV AIHVRT
Sbjct: 1070 LPVIAAYMLCGTDFTPTFFGFTSFFMFQSYFEYVKNPENHRFLKALGEHAVKDGAVAGVALEREELIKFVALAYFKKYQASFLYPPGHQVEPIVDPKKRNGAVDETKAWVDAIHVRT 1186
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BLAST of mRNA_P-littoralis_Contig661.71.1 vs. uniprot
Match: A0A6H5KUZ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUZ3_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 1.030e-12
Identity = 35/54 (64.81%), Postives = 42/54 (77.78%), Query Frame = 2 
Query:    2 LPVIAAYMLCGTDFTPTFFGLTSHFMFKSYYDYITNPTNHQFLKALGENAIKDG 163
            LPVIA+YML GTDFTPT  GL+S FMF+SY++   N  NHQF+KALG   I+DG
Sbjct:  359 LPVIASYMLNGTDFTPTLSGLSSFFMFQSYFELAKNAENHQFVKALGTELIEDG 412
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BLAST of mRNA_P-littoralis_Contig661.71.1 vs. uniprot
Match: A0A6H5KUA8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUA8_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 2.240e-7
Identity = 25/47 (53.19%), Postives = 35/47 (74.47%), Query Frame = 2 
Query:    2 LPVIAAYMLCGTDFTPTFFGLTSHFMFKSYYDYITNPTNHQFLKALG 142
            LP+I+AY+L GTD+TPT  GLT+  MF++YYD + +  NH F+  LG
Sbjct:   81 LPIISAYVLNGTDYTPTLSGLTASSMFQAYYDALKDAGNHNFVLPLG 127
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BLAST of mRNA_P-littoralis_Contig661.71.1 vs. uniprot
Match: A0A6H5JVH3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVH3_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 4.230e-6
Identity = 25/47 (53.19%), Postives = 33/47 (70.21%), Query Frame = 2 
Query:    2 LPVIAAYMLCGTDFTPTFFGLTSHFMFKSYYDYITNPTNHQFLKALG 142
            LP+I AY+L GTDFTPT  GLT+  M ++YYD + +  NH F+  LG
Sbjct:   92 LPIIYAYVLNGTDFTPTLSGLTASSMSQAYYDALKDAGNHNFVLPLG 138
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BLAST of mRNA_P-littoralis_Contig661.71.1 vs. uniprot
Match: A0A6H5JPJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPJ8_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 5.530e-6
Identity = 22/47 (46.81%), Postives = 35/47 (74.47%), Query Frame = 2 
Query:    2 LPVIAAYMLCGTDFTPTFFGLTSHFMFKSYYDYITNPTNHQFLKALG 142
            LP+++A++L GTDFTPT  GLT+  +F+++YD + +  NH F+  LG
Sbjct:   61 LPIVSAFVLNGTDFTPTLSGLTASSVFQAFYDALKDAGNHNFVLPLG 107
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig661.71.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JBA3_9PHAE1.240e-5780.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQE5_9PHAE2.570e-5780.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUZ3_9PHAE1.030e-1264.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUA8_9PHAE2.240e-753.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVH3_9PHAE4.230e-653.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPJ8_9PHAE5.530e-646.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig661contigP-littoralis_Contig661:136113..136464 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size352
Hectar predicted targeting categoryother localisation
Exons1
Cds size330
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791382.787033-UTR-P-littoralis_Contig661:136112..1361341680791382.787033-UTR-P-littoralis_Contig661:136112..136134Pylaiella littoralis U1_48UTRP-littoralis_Contig661 136113..136134 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791382.801133-CDS-P-littoralis_Contig661:136134..1364641680791382.801133-CDS-P-littoralis_Contig661:136134..136464Pylaiella littoralis U1_48CDSP-littoralis_Contig661 136135..136464 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig661.71.1prot_P-littoralis_Contig661.71.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig661 136135..136464 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig661.71.1

>prot_P-littoralis_Contig661.71.1 ID=prot_P-littoralis_Contig661.71.1|Name=mRNA_P-littoralis_Contig661.71.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=110bp
MLCGTDFTPTFFGLTSHFMFKSYYDYITNPTNHQFLKALGENAIKDGAVS
GVALVREEVIKFVALAYYKKHQALFLHPLGHQVEPTLDPKKRNGAIDETK
AWVAAIHVRT
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mRNA from alignment at P-littoralis_Contig661:136113..136464+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig661.71.1 ID=mRNA_P-littoralis_Contig661.71.1|Name=mRNA_P-littoralis_Contig661.71.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=352bp|location=Sequence derived from alignment at P-littoralis_Contig661:136113..136464+ (Pylaiella littoralis U1_48)
CTTGCCTGTCATCGCTGCCTACATGCTTTGCGGGACCGACTTCACCCCGA
CCTTTTTCGGTTTAACTTCGCATTTTATGTTCAAGTCGTATTACGACTAT
ATCACCAATCCCACCAACCACCAATTTCTAAAGGCCCTGGGTGAAAATGC
GATAAAGGATGGAGCGGTTTCCGGTGTTGCTTTGGTAAGGGAAGAGGTGA
TCAAGTTTGTCGCTCTCGCCTACTATAAAAAGCACCAGGCGTTGTTTTTA
CATCCGCTCGGGCACCAGGTGGAGCCTACCCTTGATCCAAAAAAACGAAA
CGGGGCGATTGACGAAACGAAGGCTTGGGTTGCTGCCATCCACGTACGCA
CA
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Coding sequence (CDS) from alignment at P-littoralis_Contig661:136113..136464+

>mRNA_P-littoralis_Contig661.71.1 ID=mRNA_P-littoralis_Contig661.71.1|Name=mRNA_P-littoralis_Contig661.71.1|organism=Pylaiella littoralis U1_48|type=CDS|length=330bp|location=Sequence derived from alignment at P-littoralis_Contig661:136113..136464+ (Pylaiella littoralis U1_48)
ATGCTTTGCGGGACCGACTTCACCCCGACCTTTTTCGGTTTAACTTCGCA
TTTTATGTTCAAGTCGTATTACGACTATATCACCAATCCCACCAACCACC
AATTTCTAAAGGCCCTGGGTGAAAATGCGATAAAGGATGGAGCGGTTTCC
GGTGTTGCTTTGGTAAGGGAAGAGGTGATCAAGTTTGTCGCTCTCGCCTA
CTATAAAAAGCACCAGGCGTTGTTTTTACATCCGCTCGGGCACCAGGTGG
AGCCTACCCTTGATCCAAAAAAACGAAACGGGGCGATTGACGAAACGAAG
GCTTGGGTTGCTGCCATCCACGTACGCACA
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