mRNA_P-littoralis_Contig661.67.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig661.67.1
Unique NamemRNA_P-littoralis_Contig661.67.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig661.67.1 vs. uniprot
Match: A0A6H5KQE5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQE5_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 8.120e-39
Identity = 71/89 (79.78%), Postives = 82/89 (92.13%), Query Frame = 1 
Query:    1 HVDLIAAIAYFPVLTSRGKLTELPYVPPLLNYARDFGLEDERLLAIWSQFRRQVLACVRRDSAKSDGNLEVQVARQVINDADDKRMVGV 267
            HVDLIAAIAYFPVL SRGK+ EL +VPP L++ARDFG+E+ERLLAIWSQFR +V+ACVRRDSAKSDG+ EVQVARQVI+DAD +RMVGV
Sbjct:  173 HVDLIAAIAYFPVLASRGKVAELSFVPPRLDFARDFGVENERLLAIWSQFRHRVVACVRRDSAKSDGDFEVQVARQVISDADAERMVGV 261
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BLAST of mRNA_P-littoralis_Contig661.67.1 vs. uniprot
Match: A0A6H5L2D3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2D3_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 1.200e-33
Identity = 64/89 (71.91%), Postives = 77/89 (86.52%), Query Frame = 1 
Query:    1 HVDLIAAIAYFPVLTSRGKLTELPYVPPLLNYARDFGLEDERLLAIWSQFRRQVLACVRRDSAKSDGNLEVQVARQVINDADDKRMVGV 267
            HVDLIAAIAYF VL +R K+TEL  VPP L++ARDFG ++ERL+ IW QFRR+V+ACVRRDS KSDG+ EVQVARQVI+DA ++RMVGV
Sbjct:  173 HVDLIAAIAYFHVLKTREKVTELQCVPPTLDFARDFGPDNERLMEIWGQFRRRVVACVRRDSVKSDGDFEVQVARQVIDDAHEERMVGV 261
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BLAST of mRNA_P-littoralis_Contig661.67.1 vs. uniprot
Match: A0A6H5KGL9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGL9_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 1.340e-20
Identity = 45/89 (50.56%), Postives = 60/89 (67.42%), Query Frame = 1 
Query:    1 HVDLIAAIAYFPVLTSRGKLTELPYVPPLLNYARDFGLEDERLLAIWSQFRRQVLACVRRDSAKSDGNLEVQVARQVINDADDKRMVGV 267
            HVDL+AAIAY     SR +  ELP  PP LN+ RDFG  + R++  W +FR QVLACV+  + + DG+ EV++AR+VI DA  +  VGV
Sbjct:   46 HVDLVAAIAYHHTSASRRQRAELPQRPPKLNFVRDFGTSEPRMVLTWERFRAQVLACVQERAVEEDGDFEVRLARRVIRDAAPEERVGV 134
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BLAST of mRNA_P-littoralis_Contig661.67.1 vs. uniprot
Match: A0A6H5KRV8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRV8_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 1.970e-18
Identity = 43/89 (48.31%), Postives = 60/89 (67.42%), Query Frame = 1 
Query:    1 HVDLIAAIAYFPVLTSRGKLTELPYVPPLLNYARDFGLEDERLLAIWSQFRRQVLACVRRDSAKSDGNLEVQVARQVINDADDKRMVGV 267
            HVDL+A IAY+ VLTSRG+++EL + PP L +ARDF     R++ IW  FR +VL CV  D  K DG  E++VA++ I D+   + +GV
Sbjct:  219 HVDLVAGIAYYHVLTSRGRMSELTHTPPKLLFARDFSSTTPRIVEIWGGFRSRVLQCVFGDFTKVDGYFEMRVAKRHIRDSAAGKALGV 307
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BLAST of mRNA_P-littoralis_Contig661.67.1 vs. uniprot
Match: A0A6H5L7Q2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7Q2_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 2.670e-18
Identity = 44/89 (49.44%), Postives = 59/89 (66.29%), Query Frame = 1 
Query:    1 HVDLIAAIAYFPVLTSRGKLTELPYVPPLLNYARDFGLEDERLLAIWSQFRRQVLACVRRDSAKSDGNLEVQVARQVINDADDKRMVGV 267
            HVDL+A IAY+ VLTSRG++ EL + PP L +ARDF     R++ IW  FR +VL CV  D  K DG+ E+ VA++ I D+   R +GV
Sbjct:   12 HVDLVAGIAYYHVLTSRGRMWELTHTPPKLLFARDFSSTTPRIVKIWRGFRSRVLHCVFGDFTKVDGDFEMPVAKRHIRDSAAGRALGV 100
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig661.67.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KQE5_9PHAE8.120e-3979.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L2D3_9PHAE1.200e-3371.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGL9_9PHAE1.340e-2050.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KRV8_9PHAE1.970e-1848.31Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L7Q2_9PHAE2.670e-1849.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig661contigP-littoralis_Contig661:133219..133486 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size268
Hectar predicted targeting categoryother localisation
Exons1
Cds size267
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791382.7175615-CDS-P-littoralis_Contig661:133218..1334851680791382.7175615-CDS-P-littoralis_Contig661:133218..133485Pylaiella littoralis U1_48CDSP-littoralis_Contig661 133219..133485 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig661.67.1prot_P-littoralis_Contig661.67.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig661 133219..133485 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig661.67.1

>prot_P-littoralis_Contig661.67.1 ID=prot_P-littoralis_Contig661.67.1|Name=mRNA_P-littoralis_Contig661.67.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=89bp
HVDLIAAIAYFPVLTSRGKLTELPYVPPLLNYARDFGLEDERLLAIWSQF
RRQVLACVRRDSAKSDGNLEVQVARQVINDADDKRMVGV
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mRNA from alignment at P-littoralis_Contig661:133219..133486+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig661.67.1 ID=mRNA_P-littoralis_Contig661.67.1|Name=mRNA_P-littoralis_Contig661.67.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=268bp|location=Sequence derived from alignment at P-littoralis_Contig661:133219..133486+ (Pylaiella littoralis U1_48)
CACGTGGACCTCATTGCGGCAATAGCTTACTTCCCTGTTTTGACATCTCG
GGGAAAGCTTACCGAGCTTCCTTACGTCCCTCCGCTCCTAAACTATGCCC
GTGATTTCGGTTTGGAGGATGAAAGGCTTCTAGCAATCTGGAGCCAGTTT
CGGCGTCAGGTTCTGGCGTGTGTGCGTCGTGATTCAGCGAAGTCGGACGG
GAACTTGGAGGTTCAGGTGGCCAGACAGGTTATCAACGACGCCGATGATA
AGCGCATGGTGGGCGTCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig661:133219..133486+

>mRNA_P-littoralis_Contig661.67.1 ID=mRNA_P-littoralis_Contig661.67.1|Name=mRNA_P-littoralis_Contig661.67.1|organism=Pylaiella littoralis U1_48|type=CDS|length=267bp|location=Sequence derived from alignment at P-littoralis_Contig661:133219..133486+ (Pylaiella littoralis U1_48)
CACGTGGACCTCATTGCGGCAATAGCTTACTTCCCTGTTTTGACATCTCG
GGGAAAGCTTACCGAGCTTCCTTACGTCCCTCCGCTCCTAAACTATGCCC
GTGATTTCGGTTTGGAGGATGAAAGGCTTCTAGCAATCTGGAGCCAGTTT
CGGCGTCAGGTTCTGGCGTGTGTGCGTCGTGATTCAGCGAAGTCGGACGG
GAACTTGGAGGTTCAGGTGGCCAGACAGGTTATCAACGACGCCGATGATA
AGCGCATGGTGGGCGTC
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