mRNA_P-littoralis_Contig661.65.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig661.65.1
Unique NamemRNA_P-littoralis_Contig661.65.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig661.65.1 vs. uniprot
Match: A0A6H5KIM0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIM0_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 8.600e-26
Identity = 61/99 (61.62%), Postives = 72/99 (72.73%), Query Frame = 1 
Query:    1 GDDVGLETDAAVEE---AHAGSGVGNGVETQEPTTRARSTASHVLVRRGVEMIRTALWTVLSGLGGVIGRIATGPFGRVETENKRWPSGASGATDQHGD 288
            GDDVGLETD A+EE   A  G    N VET E TT  RSTASH  VRRGV+++ TA+W V++G+GGVI RIA+ PFGR ET +K +P G SGATD HGD
Sbjct:  306 GDDVGLETDEAMEEGEGARVGWXXXNXVETAE-TTEERSTASHGFVRRGVDILHTAVWAVVTGVGGVIDRIASAPFGRDETADKAYPRGTSGATDHHGD 403
[Close]
BLAST of mRNA_P-littoralis_Contig661.65.1 vs. uniprot
Match: A0A6H5KM52_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM52_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 4.650e-16
Identity = 53/90 (58.89%), Postives = 63/90 (70.00%), Query Frame = 1 
Query:    1 GDDVGLETDAAVEE---AHAGSGVGNGVETQEPTTRARSTASHVLVRRGVEMIRTALWTVLSGLGGVIGRIATGPFGRV---ETENKRWP 252
            G+ V +ET  A+EE   AHAGSGV N VET+E T   RSTASH L RRG+EMIR+A+  V++GLGGV+ RIAT  FGRV   ET  K  P
Sbjct:  205 GERVVVETVEAIEETDGAHAGSGVENVVETEE-TMEGRSTASHRLPRRGIEMIRSAVLAVVNGLGGVVDRIATALFGRVDPFETTGKASP 293
[Close]
BLAST of mRNA_P-littoralis_Contig661.65.1 vs. uniprot
Match: A0A6H5JV03_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV03_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 2.290e-15
Identity = 54/100 (54.00%), Postives = 63/100 (63.00%), Query Frame = 1 
Query:    1 GDDVGLETDAAVEEA---HAGSGVGNGVETQEPTTRARSTASHVLVRRGVEMIRTALWTVLSGLGGVIGRIATGPFGRVETENKRWPSGASGATDQHGDE 291
            GD    ETD A+E+A   H GSGVG G+ET+E T       SH     G++        V SG+GGVIGRIAT PFGRVET +K  P GASGATDQHGD+
Sbjct:  301 GDGERKETDEAMEDAAGAHVGSGVGTGMETEENTGGRDD--SH----GGLD--------VFSGVGGVIGRIATAPFGRVETADKTRPRGASGATDQHGDQ 386
[Close]
BLAST of mRNA_P-littoralis_Contig661.65.1 vs. uniprot
Match: A0A6H5JYP9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYP9_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 1.940e-11
Identity = 39/70 (55.71%), Postives = 47/70 (67.14%), Query Frame = 1 
Query:   43 AHAGSGVGNGVETQEPTTRARSTASHVLVRRGVEMIRTALWTVLSGLGGVIGRIATGPFGRVETENKRWP 252
            AH GSG+GNG + +E T R R TA H ++RRGVEM R+A   V+ G+ GVIGRIA  PF  VET  K  P
Sbjct:  326 AHTGSGMGNGAKAEE-TGRERRTAWHGVLRRGVEMFRSAALAVVGGVRGVIGRIAASPFRCVETVVKTCP 394
[Close]
BLAST of mRNA_P-littoralis_Contig661.65.1 vs. uniprot
Match: A0A6H5KAG3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAG3_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 2.000e-6
Identity = 32/59 (54.24%), Postives = 37/59 (62.71%), Query Frame = 1 
Query:    1 GDDVGLETDAAVEEA---HAGSGVGNGVETQEPTTRARSTASHVLVRRGVEMIRTALWT 168
            GD  G ET+ A+E+A   H G       ET+E T R  STA H  VRRGVEMIRTA+WT
Sbjct:  314 GDGEGKETNEAMEDAAGAHVGXXXXXXXETEETTVRVGSTAPHGFVRRGVEMIRTAVWT 372
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig661.65.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KIM0_9PHAE8.600e-2661.62Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KM52_9PHAE4.650e-1658.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JV03_9PHAE2.290e-1554.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYP9_9PHAE1.940e-1155.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAG3_9PHAE2.000e-654.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig661contigP-littoralis_Contig661:129790..130235 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size293
Hectar predicted targeting categoryother localisation
Exons2
Cds size291
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791382.631162-CDS-P-littoralis_Contig661:129789..1300411680791382.631162-CDS-P-littoralis_Contig661:129789..130041Pylaiella littoralis U1_48CDSP-littoralis_Contig661 129790..130041 +
1680791382.643005-CDS-P-littoralis_Contig661:130194..1302331680791382.643005-CDS-P-littoralis_Contig661:130194..130233Pylaiella littoralis U1_48CDSP-littoralis_Contig661 130195..130233 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig661.65.1prot_P-littoralis_Contig661.65.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig661 129790..130233 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig661.65.1

>prot_P-littoralis_Contig661.65.1 ID=prot_P-littoralis_Contig661.65.1|Name=mRNA_P-littoralis_Contig661.65.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=97bp
GDDVGLETDAAVEEAHAGSGVGNGVETQEPTTRARSTASHVLVRRGVEMI
RTALWTVLSGLGGVIGRIATGPFGRVETENKRWPSGASGATDQHGDE
back to top

mRNA from alignment at P-littoralis_Contig661:129790..130235+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig661.65.1 ID=mRNA_P-littoralis_Contig661.65.1|Name=mRNA_P-littoralis_Contig661.65.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=446bp|location=Sequence derived from alignment at P-littoralis_Contig661:129790..130235+ (Pylaiella littoralis U1_48)
GGAGACGATGTGGGATTGGAGACGGATGCGGCCGTGGAGGAGGCACACGC
GGGGTCGGGCGTGGGGAATGGAGTGGAGACGCAGGAGCCCACGACTAGGG
CTCGCTCTACTGCTTCGCACGTGCTTGTTCGCAGGGGGGTCGAGATGATT
CGCACGGCACTTTGGACGGTTTTAAGTGGGTTAGGTGGCGTGATCGGTCG
CATCGCGACTGGTCCGTTTGGCCGCGTCGAAACGGAAAACAAGAGATGGC
CGGTGAGAACAAATTCTTAAAACTTGAAACTATGTCGATCATCGCCAGTA
AATGACCACAGATCGCCATCGATATCGAATGCCCCCTTTGGATTTATACT
TATTCGACGGCAGCGCTAACAAGTCGGTTGTTTCTTCACGTGCTCGTACC
GGCAGAGCGGCGCCTCGGGCGCCACCGACCAGCACGGAGACGAAGG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig661:129790..130235+

>mRNA_P-littoralis_Contig661.65.1 ID=mRNA_P-littoralis_Contig661.65.1|Name=mRNA_P-littoralis_Contig661.65.1|organism=Pylaiella littoralis U1_48|type=CDS|length=291bp|location=Sequence derived from alignment at P-littoralis_Contig661:129790..130235+ (Pylaiella littoralis U1_48)
GGAGACGATGTGGGATTGGAGACGGATGCGGCCGTGGAGGAGGCACACGC
GGGGTCGGGCGTGGGGAATGGAGTGGAGACGCAGGAGCCCACGACTAGGG
CTCGCTCTACTGCTTCGCACGTGCTTGTTCGCAGGGGGGTCGAGATGATT
CGCACGGCACTTTGGACGGTTTTAAGTGGGTTAGGTGGCGTGATCGGTCG
CATCGCGACTGGTCCGTTTGGCCGCGTCGAAACGGAAAACAAGAGATGGC
CGAGCGGCGCCTCGGGCGCCACCGACCAGCACGGAGACGAA
back to top