mRNA_P-littoralis_Contig661.61.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig661.61.1
Unique NamemRNA_P-littoralis_Contig661.61.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig661.61.1 vs. uniprot
Match: D8LDD9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDD9_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 9.720e-23
Identity = 57/101 (56.44%), Postives = 71/101 (70.30%), Query Frame = 3 
Query:   30 MNNPLATRADITSHLAEFVHDNQYLYFASVSKCWKKTWGRDRPTVTAAVTADTSVSQLLFSTECGL--GRTAKACMAMAELGRLDLLQCAQENGFRWNSLT 326
            M NP    AD+ SH +EFVHD+Q+L+FASVS+ W+  W R RPT T A+T DTS SQL  S +CGL  G TA  C A+A LGRLDLL+ A+  GFRW+ +T
Sbjct:    1 MGNPFQATADVISHASEFVHDDQFLFFASVSRAWRGAW-RGRPTSTRAITPDTSPSQLRHSVDCGLSPGGTA-VCTAIASLGRLDLLRAARALGFRWDKMT 99
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BLAST of mRNA_P-littoralis_Contig661.61.1 vs. uniprot
Match: A0A6H5L0J7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0J7_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 1.450e-22
Identity = 57/95 (60.00%), Postives = 67/95 (70.53%), Query Frame = 3 
Query:   42 LATRADITSHLAEFVHDNQYLYFASVSKCWKKTWGRDRPTVTAAVTADTSVSQLLFSTECGLGRTAKACMAMAELGRLDLLQCAQENGFRWNSLT 326
            L    DI S +AEFV DNQYL+FASVS+ W+  WG+ RPTVT A+TADTSV QL  S ECGL RTA  C  +A LGRLDLL+ A+  G +WN  T
Sbjct:    3 LFAAVDIVSTVAEFVDDNQYLFFASVSRGWRDVWGK-RPTVTKALTADTSVPQLSLSFECGLRRTAAVCETVAGLGRLDLLRRARAMGCQWNENT 96
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BLAST of mRNA_P-littoralis_Contig661.61.1 vs. uniprot
Match: D7FMS7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMS7_ECTSI)

HSP 1 Score: 108 bits (269), Expect = 1.010e-21
Identity = 58/99 (58.59%), Postives = 67/99 (67.68%), Query Frame = 3 
Query:   30 MNNPLATRADITSHLAEFVHDNQYLYFASVSKCWKKTWGRDRPTVTAAVTADTSVSQLLFSTECGLGRTAKACMAMAELGRLDLLQCAQENGFRWNSLT 326
            M   L    DI S + EFV DNQYL+FASVS+ W+  WG+ RPTVT A+TADTSVSQL  S ECGL RTA  C  +A LGRLDLL+ A+  G  WN  T
Sbjct:    1 MEKQLFAAVDIVSTVGEFVDDNQYLFFASVSRGWRDVWGK-RPTVTKALTADTSVSQLSLSFECGLRRTAAVCETVAGLGRLDLLRRARAMGCPWNENT 98
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BLAST of mRNA_P-littoralis_Contig661.61.1 vs. uniprot
Match: A0A6H5L0K8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0K8_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 3.990e-21
Identity = 55/89 (61.80%), Postives = 65/89 (73.03%), Query Frame = 3 
Query:   60 ITSHLAEFVHDNQYLYFASVSKCWKKTWGRDRPTVTAAVTADTSVSQLLFSTECGLGRTAKACMAMAELGRLDLLQCAQENGFRWNSLT 326
            + S+LAEFV DNQ+L+FASVS+ W+  WG+ RPTVT A+TADTSV QL  S ECGL RTA  C  +A LGRLDLLQ A+  G  WN  T
Sbjct:   27 LLSYLAEFVDDNQHLFFASVSRGWRDVWGK-RPTVTKALTADTSVPQLSLSFECGLRRTAAVCETVAGLGRLDLLQRARAMGCPWNENT 114
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BLAST of mRNA_P-littoralis_Contig661.61.1 vs. uniprot
Match: D8LFW3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFW3_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 3.830e-15
Identity = 45/107 (42.06%), Postives = 66/107 (61.68%), Query Frame = 3 
Query:    6 VSSPRGLGMNNPLATRADITSHLAEFVHDNQYLYFASVSKCWKKTWGRDRPTVTAAVTADTSVSQLLFSTECGLGRTAKACMAMAELGRLDLLQCAQENGFRWNSLT 326
            +++     ++NPL    DI   LA+FVHD Q+L+FA VS  W++ WGR RPT T A+T   + SQL +S  CGL + A+ C A+A  G+L++L+ A+E    W   T
Sbjct:   21 IAAAAAAAVDNPLDANVDIVRCLADFVHDEQHLFFAGVSTLWREAWGR-RPTSTRAITEHVTPSQLCWSFSCGLRKRAEVCEAIAGFGKLEVLKRARELKCPWGRST 126
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BLAST of mRNA_P-littoralis_Contig661.61.1 vs. uniprot
Match: D7FH78_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH78_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 4.170e-12
Identity = 45/92 (48.91%), Postives = 58/92 (63.04%), Query Frame = 3 
Query:   48 TRADITSHLAEFVHDNQYLYFASVSKCWKKTWGRDRPTVTAAVTADTSVSQLLFSTECGLGRTAKA-CMAMAELGRLDLLQCAQENGFRWNS 320
            T  +I   LA+FV DNQ+L+FA V+K W+  W   RPT+TA VT DT+ SQL  S ECGL +     C A+A LG+L+LL CA   G   N+
Sbjct:  111 TNRNILLCLAQFVPDNQFLFFAPVAKGWRAAW--QRPTITAHVTPDTTTSQLQHSFECGLPQNQTGLCAALARLGKLNLLACAVGAGCPMNA 200
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig661.61.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LDD9_ECTSI9.720e-2356.44Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5L0J7_9PHAE1.450e-2260.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FMS7_ECTSI1.010e-2158.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L0K8_9PHAE3.990e-2161.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LFW3_ECTSI3.830e-1542.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FH78_ECTSI4.170e-1248.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig661contigP-littoralis_Contig661:121589..124336 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FJY0
PFAMsAnk_2,Ank_4
Model size2748
Max annot lvl2759|Eukaryota
KEGG koko:K06052
KEGG Pathwayko01522,ko04330,ko04371,ko04658,ko04668,ko05165,ko05200,ko05224,map01522,map04330,map04371,map04658,map04668,map05165,map05200,map05224
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.54e-13
EggNOG OGs2AMK4@1|root,2RZCC@2759|Eukaryota
Cds size1419
BRITEko00000,ko00001,ko04090
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791382.1301699-UTR-P-littoralis_Contig661:121588..1228881680791382.1301699-UTR-P-littoralis_Contig661:121588..122888Pylaiella littoralis U1_48UTRP-littoralis_Contig661 121589..122888 -
1680791382.1522346-UTR-P-littoralis_Contig661:124307..1243361680791382.1522346-UTR-P-littoralis_Contig661:124307..124336Pylaiella littoralis U1_48UTRP-littoralis_Contig661 124308..124336 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791382.1416063-CDS-P-littoralis_Contig661:122888..1243071680791382.1416063-CDS-P-littoralis_Contig661:122888..124307Pylaiella littoralis U1_48CDSP-littoralis_Contig661 122889..124307 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig661.61.1prot_P-littoralis_Contig661.61.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig661 122889..124307 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig661.61.1

>prot_P-littoralis_Contig661.61.1 ID=prot_P-littoralis_Contig661.61.1|Name=mRNA_P-littoralis_Contig661.61.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=473bp
MNNPLATRADITSHLAEFVHDNQYLYFASVSKCWKKTWGRDRPTVTAAVT
ADTSVSQLLFSTECGLGRTAKACMAMAELGRLDLLQCAQENGFRWNSLTC
SMAAKGGHLAVIQWVRSNGCPWDVRTCSLAAEEGHLNVLKWARSNGCPWD
MGTCSGAASGGHLDVLMWARSNGCPWNERTCSGAALGGHLDVLKWARCEN
CPWNLGTCYGAALGGHLNVLEWARSEGCPWDDFVCYGAAEGGHLDVLKWA
RSEGCPWNKTTCHGAAKGGHVNVLMWARSEGCPWDHLLSSTAASGGHLDV
LKWARSNGCPLNNITCEAAAAGGHLDVLKWAQSMGCPWNERTCHKAAQGG
HLQILTWARSKGCPWDKDTSSGAASGGHLGVLKWARSNGCPWDKNTCRSA
AEGGYLNVLKWARSNGCPWDENTCCAAAAEGHLDILKWAQSRGCPWDKRA
VNAARVGGHLDVLEWATSNGLS*
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mRNA from alignment at P-littoralis_Contig661:121589..124336-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig661.61.1 ID=mRNA_P-littoralis_Contig661.61.1|Name=mRNA_P-littoralis_Contig661.61.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2748bp|location=Sequence derived from alignment at P-littoralis_Contig661:121589..124336- (Pylaiella littoralis U1_48)
CACAGGTTTCTTCGCCAAGAGGTTTGGGCATGAATAATCCTCTAGCAACT
AGGGCCGATATCACTTCGCACCTGGCGGAGTTTGTGCACGACAACCAGTA
CCTGTACTTCGCATCGGTATCCAAATGCTGGAAGAAAACTTGGGGGCGAG
ACCGGCCCACGGTCACCGCCGCCGTGACGGCTGACACGTCTGTGTCTCAG
CTGCTGTTCAGCACCGAGTGCGGGTTGGGCCGGACTGCTAAAGCGTGCAT
GGCCATGGCTGAGCTTGGGAGGCTAGATCTTCTTCAGTGTGCTCAAGAGA
ACGGGTTCCGCTGGAACAGCTTGACGTGCTCGATGGCTGCAAAAGGGGGG
CATTTGGCCGTTATCCAGTGGGTGCGATCGAATGGCTGTCCGTGGGACGT
ACGCACATGCTCCCTTGCTGCGGAAGAAGGGCATCTCAACGTCCTGAAGT
GGGCACGGTCCAACGGCTGTCCATGGGACATGGGCACGTGCTCCGGAGCT
GCCTCAGGGGGGCATCTCGACGTCCTGATGTGGGCACGGTCAAACGGCTG
TCCTTGGAACGAACGCACGTGCTCCGGAGCTGCCCTAGGGGGGCACCTCG
ACGTTTTAAAGTGGGCACGGTGCGAGAACTGTCCCTGGAACCTGGGCACG
TGCTACGGAGCTGCCTTAGGGGGTCATCTCAACGTGCTGGAGTGGGCACG
ATCCGAAGGCTGTCCATGGGACGACTTTGTGTGCTACGGAGCTGCCGAGG
GGGGGCATCTCGACGTTCTAAAATGGGCACGATCCGAGGGCTGCCCTTGG
AACAAAACGACGTGCCATGGAGCTGCCAAGGGGGGGCATGTCAACGTTCT
GATGTGGGCACGGTCCGAGGGTTGCCCGTGGGATCACCTATTGAGCTCTA
CAGCAGCCTCAGGGGGGCATCTCGACGTCCTGAAATGGGCACGATCCAAT
GGCTGTCCATTGAACAATATCACGTGCGAGGCAGCTGCCGCGGGAGGGCA
TCTCGACGTTCTGAAGTGGGCCCAATCGATGGGCTGTCCATGGAATGAAC
GCACGTGTCACAAAGCTGCCCAGGGGGGGCATCTCCAGATTCTAACGTGG
GCACGGTCAAAGGGCTGTCCATGGGACAAAGACACGAGCTCTGGGGCTGC
TTCAGGGGGGCACCTAGGCGTGTTGAAATGGGCACGGTCTAACGGCTGTC
CTTGGGACAAGAATACTTGCCGCTCTGCTGCCGAAGGGGGGTACCTTAAC
GTGTTGAAGTGGGCGCGGTCCAACGGCTGTCCTTGGGATGAAAACACGTG
CTGCGCAGCTGCCGCAGAGGGGCATCTCGACATTCTGAAGTGGGCGCAGT
CCAGGGGCTGTCCTTGGGACAAGCGGGCAGTAAACGCAGCTAGAGTGGGA
GGTCATCTTGATGTTCTGGAGTGGGCAACTTCCAACGGCTTGTCCTGAAT
GTCACGAATACTCCACGTACCGAAGGCGGTGGTTACGGAAATTGTTTCAG
GGCTGTTCTCAACGACTGGACACTTCTCATCACCAGCTCTTTCGGCAAGA
ATGAGTTTCTTGATCGTTGAGGGTCTAAGCAACGACCTTCTATTGTGAAG
GCGTGGCATGAAGATCAGGTCGTTCTGAGGTAGAAGACGGGTGTTTTACT
ACTCAAAAAAACATTTTGATACGAAACGTTTTTTTGTTTTCCTCGGCATG
GCACTCTTCGCTTTAAAATTTGGAGGGTTGTAAATGGTGCCTTCGGCACC
GTGCGGGATGGTATGGTTAAAAAAAGCCCGCCACAGGCTGGAAATGTTTT
GGGCTTACCATCAGATGGGATGGGATGGTATTTCTATCGCTTGCTGATGG
TATTGAGATGGGATGGCAAGGTAGAGTACATTCTGTTGATGAGATGGGAT
GGTATTGAGCGCCGGATGCTGATGGGATGGGATGGGGTCCCTCGTTACCA
TGTGGCGGGGATGGAATGGAACATATAGATAGTGTATGATGGGATGGTAG
CTGGTGATGGGACCCAGTATCTTCGTACCTTCAATCGCCATCCCATCACC
ATCCCATCATTGATGGTAATACCATCCCATCGAAATACTGTGTACAGCCC
TGAAAATTTGTTTCGTACCTGACATGACTTCTCTGCGTTCTACAGCTTTT
TTTAGTTGCGCATTCTACGCATACTGGGGACCTTTGTGTTCGGTTGAAAT
TATTTTGTTTTCTGCTGTACTACAATAATACCGTTCGTCTCTTCTCCATG
TTTCCCGTGTTTTATTTTCTGTTATGTGTTTGCTCTTCGTGTTTTTTAAC
TTATTTTTTGCCAATGCTTTCGTATTTTCCGTACGCGATGCTCTCGTTTT
CTCATGATTGTGTGTTTACCCTAACGCTGATAATATGTATGGTATTTCTA
TCGTCAAGTGCCAGAATGTTTTTTGCGGTACCGTTGCACACCAAGCAACT
CTGTACTGGGCATGAAGCTTTCAAAATCACCGATTCGCAGACAAGATTCT
GTTTTTTTTTGCATCTGTAGGAATTCCAGAAGATGTCCCCTCATCGAGGA
ACCCCTTCCTATTTATGGTTTCCTTTTCGTTTGTTTCGGTCCGTTTCCTT
ATGTTTTCTGTATCTCTCACTTGGCGTTCCTCCCACGTGTAGCACGATAT
TCTGCCTGATTTGTAGCCATGCCCCTAATTTATGCCAGATCAGGTGATGG
GAACTAGTACATGGCTGGCCGAAACTCATTCCTGCCCTAAAACCTTAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig661:121589..124336-

>mRNA_P-littoralis_Contig661.61.1 ID=mRNA_P-littoralis_Contig661.61.1|Name=mRNA_P-littoralis_Contig661.61.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1419bp|location=Sequence derived from alignment at P-littoralis_Contig661:121589..124336- (Pylaiella littoralis U1_48)
ATGAATAATCCTCTAGCAACTAGGGCCGATATCACTTCGCACCTGGCGGA
GTTTGTGCACGACAACCAGTACCTGTACTTCGCATCGGTATCCAAATGCT
GGAAGAAAACTTGGGGGCGAGACCGGCCCACGGTCACCGCCGCCGTGACG
GCTGACACGTCTGTGTCTCAGCTGCTGTTCAGCACCGAGTGCGGGTTGGG
CCGGACTGCTAAAGCGTGCATGGCCATGGCTGAGCTTGGGAGGCTAGATC
TTCTTCAGTGTGCTCAAGAGAACGGGTTCCGCTGGAACAGCTTGACGTGC
TCGATGGCTGCAAAAGGGGGGCATTTGGCCGTTATCCAGTGGGTGCGATC
GAATGGCTGTCCGTGGGACGTACGCACATGCTCCCTTGCTGCGGAAGAAG
GGCATCTCAACGTCCTGAAGTGGGCACGGTCCAACGGCTGTCCATGGGAC
ATGGGCACGTGCTCCGGAGCTGCCTCAGGGGGGCATCTCGACGTCCTGAT
GTGGGCACGGTCAAACGGCTGTCCTTGGAACGAACGCACGTGCTCCGGAG
CTGCCCTAGGGGGGCACCTCGACGTTTTAAAGTGGGCACGGTGCGAGAAC
TGTCCCTGGAACCTGGGCACGTGCTACGGAGCTGCCTTAGGGGGTCATCT
CAACGTGCTGGAGTGGGCACGATCCGAAGGCTGTCCATGGGACGACTTTG
TGTGCTACGGAGCTGCCGAGGGGGGGCATCTCGACGTTCTAAAATGGGCA
CGATCCGAGGGCTGCCCTTGGAACAAAACGACGTGCCATGGAGCTGCCAA
GGGGGGGCATGTCAACGTTCTGATGTGGGCACGGTCCGAGGGTTGCCCGT
GGGATCACCTATTGAGCTCTACAGCAGCCTCAGGGGGGCATCTCGACGTC
CTGAAATGGGCACGATCCAATGGCTGTCCATTGAACAATATCACGTGCGA
GGCAGCTGCCGCGGGAGGGCATCTCGACGTTCTGAAGTGGGCCCAATCGA
TGGGCTGTCCATGGAATGAACGCACGTGTCACAAAGCTGCCCAGGGGGGG
CATCTCCAGATTCTAACGTGGGCACGGTCAAAGGGCTGTCCATGGGACAA
AGACACGAGCTCTGGGGCTGCTTCAGGGGGGCACCTAGGCGTGTTGAAAT
GGGCACGGTCTAACGGCTGTCCTTGGGACAAGAATACTTGCCGCTCTGCT
GCCGAAGGGGGGTACCTTAACGTGTTGAAGTGGGCGCGGTCCAACGGCTG
TCCTTGGGATGAAAACACGTGCTGCGCAGCTGCCGCAGAGGGGCATCTCG
ACATTCTGAAGTGGGCGCAGTCCAGGGGCTGTCCTTGGGACAAGCGGGCA
GTAAACGCAGCTAGAGTGGGAGGTCATCTTGATGTTCTGGAGTGGGCAAC
TTCCAACGGCTTGTCCTGA
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