mRNA_P-littoralis_Contig661.42.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig661.42.1
Unique NamemRNA_P-littoralis_Contig661.42.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig661.42.1 vs. uniprot
Match: A0A6H5KW14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW14_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 2.370e-13
Identity = 35/67 (52.24%), Postives = 46/67 (68.66%), Query Frame = 1 
Query:   61 DLTLHRLAGIIGQVDEELYRLFVQEKRKANSVTLEYPKQQIAMSPARMRILYFIAGWLLSRIWKHVR 261
            D   H L  II  VDEELYR+FV+E+ K+N+V L YP +   +S AR ++LY+IAGWLLS+ W   R
Sbjct:   93 DQGRHYLCCIINVVDEELYRVFVKEREKSNTVALTYPTEIHKISTARGKVLYYIAGWLLSKAWSRKR 159
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BLAST of mRNA_P-littoralis_Contig661.42.1 vs. uniprot
Match: A0A6H5K7M3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7M3_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 1.090e-10
Identity = 40/97 (41.24%), Postives = 55/97 (56.70%), Query Frame = 1 
Query:    1 TLQWWLGHYEVQ------EAVEREPKDLTLHRLAGIIGQVDEELYR----LFVQEKRKANSVTLEYPKQQIAMSPARMRILYFIAGWLLSRIWKHVR 261
            TL+ W+    +Q      ++VER       H L G+I QVDE   R    L   + R AN +T  YP+ Q+A+S  R R+LY+IAGW+LS+I  HVR
Sbjct:   85 TLRGWMSDDVIQRVMFGLQSVERGK-----HELCGVINQVDEVNLRRLGGLAENKLRDANVITPTYPRTQVALSIPRRRLLYYIAGWVLSKIVTHVR 176
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BLAST of mRNA_P-littoralis_Contig661.42.1 vs. uniprot
Match: D7FVM7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVM7_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 1.540e-10
Identity = 28/78 (35.90%), Postives = 50/78 (64.10%), Query Frame = 1 
Query:   28 EVQEAVEREPKDLTLHRLAGIIGQVDEELYRLFVQEKRKANSVTLEYPKQQIAMSPARMRILYFIAGWLLSRIWKHVR 261
            +V E V+   + L       ++    +ELY +FV++K++AN + L YP ++  ++  R ++LY+I+GWLLS++W HVR
Sbjct:  143 DVGEKVDAAAEGLFREHFPWLLDLGVQELYGVFVRKKKEANLIKLSYPDKKTRVTKPRAKVLYYISGWLLSKVWTHVR 220
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig661.42.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KW14_9PHAE2.370e-1352.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7M3_9PHAE1.090e-1041.24Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7FVM7_ECTSI1.540e-1035.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig661contigP-littoralis_Contig661:80062..80735 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size263
Hectar predicted targeting categoryother localisation
Exons2
Cds size261
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791382.3608742-CDS-P-littoralis_Contig661:80061..801691680791382.3608742-CDS-P-littoralis_Contig661:80061..80169Pylaiella littoralis U1_48CDSP-littoralis_Contig661 80062..80169 +
1680791382.3723092-CDS-P-littoralis_Contig661:80581..807341680791382.3723092-CDS-P-littoralis_Contig661:80581..80734Pylaiella littoralis U1_48CDSP-littoralis_Contig661 80582..80734 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig661.42.1prot_P-littoralis_Contig661.42.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig661 80062..80734 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig661.42.1

>prot_P-littoralis_Contig661.42.1 ID=prot_P-littoralis_Contig661.42.1|Name=mRNA_P-littoralis_Contig661.42.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=87bp
TLQWWLGHYEVQEAVEREPKDLTLHRLAGIIGQVDEELYRLFVQEKRKAN
SVTLEYPKQQIAMSPARMRILYFIAGWLLSRIWKHVR
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mRNA from alignment at P-littoralis_Contig661:80062..80735+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig661.42.1 ID=mRNA_P-littoralis_Contig661.42.1|Name=mRNA_P-littoralis_Contig661.42.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=674bp|location=Sequence derived from alignment at P-littoralis_Contig661:80062..80735+ (Pylaiella littoralis U1_48)
ACTTTGCAATGGTGGCTAGGTCACTATGAGGTCCAGGAGGCGGTGGAGCG
CGAGCCCAAGGACCTCACCCTCCACCGGCTGGCGGGCATCATCGGCCAGG
TGGACGAGGTATGGGCATATGTTCTGCTGTTGTTGCATTGTGTTTCGTTG
GTCGTGTAAAATTTGCGCCTGCATGTGTGGGCGCAAATGTGTATGTTTAC
TTTGCGGATGGGGGCCTTACCAGAGTGTCTCACCTCTCAATTTTCTCACG
GGTCATACGGCATACTCCAAGAGTTCTTGCATGCCTTGCGGCGCTTCGAA
AGACGCGCGAAGTCTGGTAGGTTCTTCATGTGTAGCTCGACTGAAAAGTA
ATTATTTGGCCTACGCTCGTTTGTTTCAGCAGTGAGGGCTGGAATGATGC
CCGCCGTTAAATTTGTGGCGTTAATCTAGGCCTGATCTTTTACAAACCCT
CGTGCCGTCGTGCGTCCTCGCCCGCTGTTCGCTCCCGACTTGTTCCATCT
GTCCGTTTTCTGTTTCGAAGGAGCTGTACAGGCTGTTTGTCCAAGAGAAG
AGGAAGGCGAACTCGGTCACCCTCGAGTACCCGAAGCAACAGATAGCCAT
GTCGCCAGCGCGCATGCGGATCTTGTACTTCATCGCCGGGTGGTTGTTGA
GCAGGATTTGGAAACACGTCCGTA
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Coding sequence (CDS) from alignment at P-littoralis_Contig661:80062..80735+

>mRNA_P-littoralis_Contig661.42.1 ID=mRNA_P-littoralis_Contig661.42.1|Name=mRNA_P-littoralis_Contig661.42.1|organism=Pylaiella littoralis U1_48|type=CDS|length=261bp|location=Sequence derived from alignment at P-littoralis_Contig661:80062..80735+ (Pylaiella littoralis U1_48)
ACTTTGCAATGGTGGCTAGGTCACTATGAGGTCCAGGAGGCGGTGGAGCG
CGAGCCCAAGGACCTCACCCTCCACCGGCTGGCGGGCATCATCGGCCAGG
TGGACGAGGAGCTGTACAGGCTGTTTGTCCAAGAGAAGAGGAAGGCGAAC
TCGGTCACCCTCGAGTACCCGAAGCAACAGATAGCCATGTCGCCAGCGCG
CATGCGGATCTTGTACTTCATCGCCGGGTGGTTGTTGAGCAGGATTTGGA
AACACGTCCGT
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