mRNA_P-littoralis_Contig661.104.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig661.104.1
Unique NamemRNA_P-littoralis_Contig661.104.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig661.104.1 vs. uniprot
Match: A0A6H5KVF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF4_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 5.520e-32
Identity = 77/170 (45.29%), Postives = 92/170 (54.12%), Query Frame = 1
Query:    1 APNAGGISGLVDETTFFNPVYEERGDEGMGLENTLERVVASQYVEVIVVCSQAPRITGFFAVDRALYSVGRDIFYVLPPTRVL*PSILTHRLPACPRLIFRRLQMFFVSVGKPEYKFVVWRDAVKGLSTDYIQRMVVRVMRFLAAAHQDKAFDVIATVCDGASEQTSSST 510
            APN GG +GLVDET FFNP+Y+  G     +E TLE++VA+QYVE                                                           MFFVS+GKPEYKFVVWR+AV+ LSTDYIQRM++RVMR+LA AH DKAFDV+AT+CDGA E  S  T
Sbjct:  643 APNGGGFTGLVDETAFFNPIYKHEGGVVKEVEPTLEKIVATQYVE-----------------------------------------------------------MFFVSIGKPEYKFVVWREAVRSLSTDYIQRMLIRVMRYLAMAHPDKAFDVVATICDGAPEHRSFQT 753          
BLAST of mRNA_P-littoralis_Contig661.104.1 vs. uniprot
Match: D7FZI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI2_ECTSI)

HSP 1 Score: 135 bits (341), Expect = 8.480e-31
Identity = 77/170 (45.29%), Postives = 90/170 (52.94%), Query Frame = 1
Query:    1 APNAGGISGLVDETTFFNPVYEERGDEGMGLENTLERVVASQYVEVIVVCSQAPRITGFFAVDRALYSVGRDIFYVLPPTRVL*PSILTHRLPACPRLIFRRLQMFFVSVGKPEYKFVVWRDAVKGLSTDYIQRMVVRVMRFLAAAHQDKAFDVIATVCDGASEQTSSST 510
            APN GG +GLVDETTFFNP+Y+  G     +E  LE++VA+QYVE                                                           MFFVS+GKPEYKFVVWR+AV+ LSTDYIQRM++R MR+LA AH DKAFDVIAT CDGA E  S  T
Sbjct:  552 APNGGGFTGLVDETTFFNPIYKHEGGVVKEVEPILEKIVATQYVE-----------------------------------------------------------MFFVSIGKPEYKFVVWREAVRSLSTDYIQRMLIRAMRYLAMAHPDKAFDVIATECDGAPEHRSFQT 662          
BLAST of mRNA_P-littoralis_Contig661.104.1 vs. uniprot
Match: A0A6H5L5M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5M0_9PHAE)

HSP 1 Score: 134 bits (336), Expect = 2.940e-30
Identity = 77/173 (44.51%), Postives = 93/173 (53.76%), Query Frame = 1
Query:    1 APNAGGISGLVDETTFFNPVYEERGDEGMGLENTLERVVASQYVEVIVVCSQAPRITGFFAVDRALYSVGRDIFYVLPPTRVL*PSILTHRLPACPRLIFRRLQMFFVSVGKPEYKFVVWRDAVKGLSTDYIQRMVVRVMRFLAAAHQDKAFDVIATVCDGASEQTSSSTVLL 519
            APN GG +GLVDETTFFNP+Y+  G     +E  LE++VA+QYVE                                                           M+FVSVGKPEYKFVVWR+AV+ LSTD+IQRM++RVMR LA AH DKAFDVIATVCDGA  Q    T+++
Sbjct:  410 APNGGGFTGLVDETTFFNPIYKHEGGIVKEVEPILEKIVATQYVE-----------------------------------------------------------MYFVSVGKPEYKFVVWREAVRSLSTDFIQRMLIRVMRSLAMAHPDKAFDVIATVCDGAPGQLGEVTLVV 523          
BLAST of mRNA_P-littoralis_Contig661.104.1 vs. uniprot
Match: D7G5R1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5R1_ECTSI)

HSP 1 Score: 127 bits (319), Expect = 3.080e-30
Identity = 72/165 (43.64%), Postives = 87/165 (52.73%), Query Frame = 1
Query:    1 APNAGGISGLVDETTFFNPVYEERGDEGMGLENTLERVVASQYVEVIVVCSQAPRITGFFAVDRALYSVGRDIFYVLPPTRVL*PSILTHRLPACPRLIFRRLQMFFVSVGKPEYKFVVWRDAVKGLSTDYIQRMVVRVMRFLAAAHQDKAFDVIATVCDGASEQ 495
            AP  G ++GLVDE TFFNPVY+ + DE  GL   L +++A+QYVE                                                            FFVS+G PEYKFVVWR+AV+ LSTDYIQRM+ R MRFL+ AH+DK FDV+ATVCDGASEQ
Sbjct:  170 APKEGRLTGLVDEATFFNPVYQGKVDEDGGLGKQLGKILATQYVE------------------------------------------------------------FFVSLGNPEYKFVVWREAVRSLSTDYIQRMLTRTMRFLSIAHRDKGFDVVATVCDGASEQ 274          
BLAST of mRNA_P-littoralis_Contig661.104.1 vs. uniprot
Match: A0A6H5K6I9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6I9_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 5.170e-21
Identity = 58/94 (61.70%), Postives = 66/94 (70.21%), Query Frame = 3
Query:  498 ILEHRFAHIRAGLGTHNAPTAAQAMQRSALGDQIRALHGSSRMNSSLNARKGADFNVSDYRGKIMLAVSKAERATYVRARSWNKYEAILSPRYL 779
            ILEHRF  +RAGLGT   PTAAQA +RS  GD  R LHG SR N + NAR G DF  SDYR +IMLAV++AE A  VRARS N   A+L PRY+
Sbjct:  239 ILEHRFKDVRAGLGTLRNPTAAQAKERSVRGDLNRGLHGGSRANFNRNARSGNDFIDSDYRSRIMLAVTQAEAAENVRARSRNSPNAVLCPRYI 332          
BLAST of mRNA_P-littoralis_Contig661.104.1 vs. uniprot
Match: A0A6H5KFP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFP1_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 5.600e-15
Identity = 61/168 (36.31%), Postives = 78/168 (46.43%), Query Frame = 1
Query:    4 PNAGGISGLVDETTFF-NPVYEERG-DEGMGLENTLERVVASQYVEVIVVCSQAPRITGFFAVDRALYSVGRDIFYVLPPTRVL*PSILTHRLPACPRLIFRRLQMFFVSVGKPEYKFVVWRDAVKGLSTDYIQRMVVRVMRFLAAAHQDKAFDVIATVCDGASEQTS 501
            PN GGI GLVD  +FF +P+   +G DE + LE TLE  VA+QY+EV                                                           F+VS+G P+YKF V+R+AV+GLS   I RM+  +   L  AH+DK FDVI TVCDGA+E  S
Sbjct:  399 PNGGGIEGLVDRDSFFRHPLDAVQGVDEHITLEKTLETFVATQYLEV-----------------------------------------------------------FWVSIGNPKYKFCVYREAVRGLSGPKISRMLDEITNKLYEAHEDKKFDVIGTVCDGAAEHRS 507          
BLAST of mRNA_P-littoralis_Contig661.104.1 vs. uniprot
Match: A0A6H5K7Z3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z3_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 1.130e-13
Identity = 60/176 (34.09%), Postives = 81/176 (46.02%), Query Frame = 1
Query:    4 PNAGGISGLVD-ETTFFNPVYEERG-DEGMGLENTLERVVASQYVEVIVVCSQAPRITGFFAVDRALYSVGRDIFYVLPPTRVL*PSILTHRLPACPRLIFRRLQMFFVSVGKPEYKFVVWRDAVKGLSTDYIQRMVVRVMRFLAAAHQDKAFDVIATVCDGASEQTSSSTVLLTS 525
            PN GGISGLV  ++  ++P+   +G D+ + LE+TLE  +A+QY+EV                                                           ++VS+G P+YKF V+R+AV+GLS   I RM+  +M  L  AH DK  DVI TVCDGA E  S  T L TS
Sbjct:  184 PNGGGISGLVSGDSVLYHPLEAVQGVDKTISLEDTLETFMATQYLEV-----------------------------------------------------------WWVSIGNPKYKFCVYREAVRGLSGPKISRMLDEIMLRLYEAHPDKKIDVIGTVCDGAGEHRSFQTKLATS 300          
BLAST of mRNA_P-littoralis_Contig661.104.1 vs. uniprot
Match: A0A6H5KQL9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQL9_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 1.390e-12
Identity = 56/168 (33.33%), Postives = 75/168 (44.64%), Query Frame = 1
Query:    4 PNAGGISGLVDETTFF-NPVYEERG-DEGMGLENTLERVVASQYVEVIVVCSQAPRITGFFAVDRALYSVGRDIFYVLPPTRVL*PSILTHRLPACPRLIFRRLQMFFVSVGKPEYKFVVWRDAVKGLSTDYIQRMVVRVMRFLAAAHQDKAFDVIATVCDGASEQTS 501
            PN GGI GLVD  +   +P+   +G  + + LE TLE  VA+QY+EV                                                           F+VS+G  +YKF V+R+AVKGL+   ++RM+  VM  L   H+DK FDVI TVCDGA+E  S
Sbjct:  108 PNGGGIQGLVDPDSILRHPLDGVKGVADNISLEETLETFVATQYLEV-----------------------------------------------------------FWVSIGNLKYKFCVYREAVKGLTGPKLKRMLNEVMLRLYTVHEDKQFDVICTVCDGAAEHRS 216          
BLAST of mRNA_P-littoralis_Contig661.104.1 vs. uniprot
Match: D7FVM8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVM8_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 1.760e-5
Identity = 24/45 (53.33%), Postives = 34/45 (75.56%), Query Frame = 1
Query:    1 APNAGGISGLVDETTFFNPVYEERGDEGMGLENTLERVVASQYVE 135
            AP  GG +GLVDE TFFNPVY+ + DE   L+  L++++A++YVE
Sbjct:  229 APKEGGFTGLVDEATFFNPVYQRKVDEDGDLDKQLDKILATKYVE 273          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig661.104.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5KVF4_9PHAE5.520e-3245.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZI2_ECTSI8.480e-3145.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L5M0_9PHAE2.940e-3044.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5R1_ECTSI3.080e-3043.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K6I9_9PHAE5.170e-2161.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFP1_9PHAE5.600e-1536.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7Z3_9PHAE1.130e-1334.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQL9_9PHAE1.390e-1233.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FVM8_ECTSI1.760e-553.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig661contigP-littoralis_Contig661:157580..159051 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1034
Hectar predicted targeting categoryother localisation
Exons3
Cds size315
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791382.9580822-UTR-P-littoralis_Contig661:157579..1576611680791382.9580822-UTR-P-littoralis_Contig661:157579..157661Pylaiella littoralis U1_48UTRP-littoralis_Contig661 157580..157661 +
1680791382.9951885-UTR-P-littoralis_Contig661:158414..1590511680791382.9951885-UTR-P-littoralis_Contig661:158414..159051Pylaiella littoralis U1_48UTRP-littoralis_Contig661 158415..159051 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791382.971927-CDS-P-littoralis_Contig661:157891..1580731680791382.971927-CDS-P-littoralis_Contig661:157891..158073Pylaiella littoralis U1_48CDSP-littoralis_Contig661 157892..158073 +
1680791382.982733-CDS-P-littoralis_Contig661:158281..1584141680791382.982733-CDS-P-littoralis_Contig661:158281..158414Pylaiella littoralis U1_48CDSP-littoralis_Contig661 158282..158414 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig661.104.1prot_P-littoralis_Contig661.104.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig661 157892..158414 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig661.104.1

>prot_P-littoralis_Contig661.104.1 ID=prot_P-littoralis_Contig661.104.1|Name=mRNA_P-littoralis_Contig661.104.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=105bp
MFFVSVGKPEYKFVVWRDAVKGLSTDYIQRMVVRVMRFLAAAHQDKAFDV
IATVCDGASEQTSSSTVLLTSARAWEHTTLPLRPRPCNVLRWATRSELFT
ALPA*
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mRNA from alignment at P-littoralis_Contig661:157580..159051+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig661.104.1 ID=mRNA_P-littoralis_Contig661.104.1|Name=mRNA_P-littoralis_Contig661.104.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1472bp|location=Sequence derived from alignment at P-littoralis_Contig661:157580..159051+ (Pylaiella littoralis U1_48)
GCGCCGAACGCGGGCGGCATTTCGGGGCTCGTGGACGAGACGACCTTTTT CAACCCCGTCTACGAGGAGCGCGGAGACGAAGGTATGGGTCTTGAGAACA CTCTCGAGCGGGTGGTCGCTTCCCAGTATGTCGAGGTAATTGTTGTATGT TCCCAGGCTCCCCGCATCACAGGCTTCTTTGCTGTCGACCGGGCTCTATA TAGCGTTGGACGTGACATCTTCTATGTTTTGCCTCCAACAAGAGTATTAT AACCGTCAATCCTGACACACCGCCTTCCTGCATGCCCCCGACTCATCTTT CGTCGCCTGCAGATGTTCTTCGTCAGTGTCGGCAAGCCAGAGTACAAGTT TGTCGTCTGGCGCGACGCTGTGAAGGGGCTCAGCACGGACTACATTCAGC GCATGGTGGTGAGGGTCATGCGTTTCCTCGCGGCCGCCCACCAGGACAAG GCGTTTGACGTCATCGCCACCGTTTGCGACGGCGCATCTGAGCAGTGAGT GGTCGCGTCCGTGTCTAGATAAAACGCCAAATACTGTAACGTAGTGCCCT GAGGACATCCACCTCAGACAATATGCCCCCTCTCGTGAAACGCCCCCCCC CCACTCGCCAGAAAAAGGCTGGCGCGCCGCATAATTTGGAGGCTTCTAAA TATTACACCGTGTCGCGCCCCCGCCCTCCTCTTCCTCCCTTGGCATGCAC AGGACATCCTCGAGCACCGTTTTGCTCACATCCGCGCGGGCCTGGGAACA CACAACGCTCCCACTGCGGCCCAGGCCATGCAACGTTCTGCGTTGGGCGA CCAGATCAGAGCTCTTCACGGCTCTTCCCGCATGAACTCCAGCCTCAATG CCCGAAAGGGGGCTGACTTTAATGTCAGCGACTACAGGGGCAAAATCATG TTGGCCGTGAGCAAGGCAGAGCGCGCCACTTACGTCAGGGCGCGGTCTTG GAACAAGTACGAGGCAATTTTATCCCCGCGGTACTTGGAGTAAACTAGGT CTCAACGCAGGATCGTATGGCGGTGCCGGTAGCGTCGCTCCCTGCAGCCC TGGTTGGCTGAACTATGTAGACGAGGAGTTAGCTACAGAGTCGGGTCTTG GTTGCCACTGCTGTAGTTTATTTGGAATGGGGTACATGTACAGATTTGAT CTCTCTGCCGTAGTCTTTACTCAAGGTCACTAAGATGTCGTATATTTCCT GTGTCACGGTTGTTTCTTACGTAGTAGGTGGACTACCTATACGAGCTTTG GCTGGTTGGAAACTGTGACGATTTCGGGCCCGTAATATACGCCTGCACCC GTGTTCTTCCCTGAGAACTGTTTGGTGGCGAGCTCAACGTGCTTTTTGCG GTGGTTGGGAACAATTTTTTTGTTGTTTTGTTTTATTCTCCCATTGTTGG ACTCTGTCGTCTGCCCCTCTTGCCCCCATCCTCCACTTCTGCTAGCTAGA CGACCCAACCGGGGTCACATAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig661:157580..159051+

>mRNA_P-littoralis_Contig661.104.1 ID=mRNA_P-littoralis_Contig661.104.1|Name=mRNA_P-littoralis_Contig661.104.1|organism=Pylaiella littoralis U1_48|type=CDS|length=315bp|location=Sequence derived from alignment at P-littoralis_Contig661:157580..159051+ (Pylaiella littoralis U1_48)
ATGTTCTTCGTCAGTGTCGGCAAGCCAGAGTACAAGTTTGTCGTCTGGCG
CGACGCTGTGAAGGGGCTCAGCACGGACTACATTCAGCGCATGGTGGTGA
GGGTCATGCGTTTCCTCGCGGCCGCCCACCAGGACAAGGCGTTTGACGTC
ATCGCCACCGTTTGCGACGGCGCATCTGAGCAGACATCCTCGAGCACCGT
TTTGCTCACATCCGCGCGGGCCTGGGAACACACAACGCTCCCACTGCGGC
CCAGGCCATGCAACGTTCTGCGTTGGGCGACCAGATCAGAGCTCTTCACG
GCTCTTCCCGCATGA
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