mRNA_P-littoralis_Contig661.100.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig661.100.2
Unique NamemRNA_P-littoralis_Contig661.100.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig661.100.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig661contigP-littoralis_Contig661:156377..163224 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size500
Hectar predicted targeting categoryother localisation
Exons3
Cds size252
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791381.9439886-UTR-P-littoralis_Contig661:156376..1565531680791381.9439886-UTR-P-littoralis_Contig661:156376..156553Pylaiella littoralis U1_48UTRP-littoralis_Contig661 156377..156553 -
1680791381.9575799-UTR-P-littoralis_Contig661:162559..1626271680791381.9575799-UTR-P-littoralis_Contig661:162559..162627Pylaiella littoralis U1_48UTRP-littoralis_Contig661 162560..162627 -
1680791381.9960623-UTR-P-littoralis_Contig661:163221..1632241680791381.9960623-UTR-P-littoralis_Contig661:163221..163224Pylaiella littoralis U1_48UTRP-littoralis_Contig661 163222..163224 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791381.971093-CDS-P-littoralis_Contig661:162627..1627981680791381.971093-CDS-P-littoralis_Contig661:162627..162798Pylaiella littoralis U1_48CDSP-littoralis_Contig661 162628..162798 -
1680791381.9812784-CDS-P-littoralis_Contig661:163140..1632211680791381.9812784-CDS-P-littoralis_Contig661:163140..163221Pylaiella littoralis U1_48CDSP-littoralis_Contig661 163141..163221 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig661.100.2prot_P-littoralis_Contig661.100.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig661 162628..163221 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig661.100.2

>prot_P-littoralis_Contig661.100.2 ID=prot_P-littoralis_Contig661.100.2|Name=mRNA_P-littoralis_Contig661.100.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=84bp
MGVGDDTVGGVQDAPFSPVRRGPIFTKETIGGDDAYSMDTDEDDRVDPDP
DADRFTPQGTTKHRTIADRACCASLYHQRARCR*
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mRNA from alignment at P-littoralis_Contig661:156377..163224-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig661.100.2 ID=mRNA_P-littoralis_Contig661.100.2|Name=mRNA_P-littoralis_Contig661.100.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=6848bp|location=Sequence derived from alignment at P-littoralis_Contig661:156377..163224- (Pylaiella littoralis U1_48)
GCTATGGGAGTCGGAGATGATACGGTTGGAGGTGTGCAGGATGCTCCATT
TTCGCCAGTCAGAAGAGGACCTATTTTCACAAAGGCAAGTCCATGGCGCC
TTGTCGTCATTCACGCTAGCGTGCCCACCGCGGTGAGCTTTCCTATAGAT
TTGTCGCCGGCATTCTGTGGTTTGAACGGTGAACGGAATTATGGACCTAA
ATACGATACATAGGCACGCTTCGTATGTATAAAGGACTCCGGTGTCCCAG
ATTTATCGTGGGTTGATATACTAGCACTGCTGTTAGTTGCGTAAGGGTTG
GGTTTTCCGCATATATATCCAACATGCCGTAGAGTATCCTAGCTTTGTTG
GCCTTGCGCATGTGATTCGGCAAGGTTCTACGGTTCCTAACTTCTTATTC
TCCGTATTTCGTTATACTTCATACAGGAGACGATTGGCGGTGACGACGCT
TATAGCATGGACACCGACGAAGACGATCGGGTAGATCCCGATCCCGACGC
TGACAGGTTTACGCCGCAAGGTACGACAAAACACAGAACAATTGCCGACC
GCGCCTGTTGTGCGTCACTTTACCATCAGCGGGCTCGTTGTAGGTGAAAA
CTGTGTGGTTCCTTTTGCGTGGACTTGGCATGCCCAAATCTATTTTCTGG
TGCCCTGAAACATGACAACCCACGCTTGCCGAACGCCTGGCCCTCCCGAC
CCTGCCCCCCGCCTTTCCCCCGCCCCTCGTTGTCTGCTTCCGTGGTATGG
CTAGGAGAGGACGACGATGACGACGAGACGATGTCGGAAGATGAGGAGGA
GGACGAAGTTCGAGAAGTCCTGGTACATCGTGCGGCCCTTTTGAGTTGTG
GGACGGTGAGGCCAAGTCGTGTATGCGTCCTGCCCAATTGCTGTCGCGGA
CCTCGTGGTGTAGTTTTCGTCACTTGTCGCCCCTCTCTCTGTGTCAAAGG
TGGAAGATGTACCTTGTTAACTGGCGGGGGATCACCCCGAGCCAGAACTA
CCCACCCATGTGAGGGTAGGGTCAAGCAGCGAAAGCGCCCCGAGCACTAC
TAGTCTAGCTCTTGTCATACGGGATGCACATAAATTGTCACGCCGCGGTG
CCCCCCGTGTGCGCCTATCTGAAGGCATGAAACCGACATGAACCTTGCCT
CCGCACCGCTGGATGTCCATTCTAAGTACGTGCTCTCCGTTGCTGTCAAA
CTCCCCTATTTGTCCGTAACTGTTGATCTGGACAGGCAACGGGGGCAGCG
ACGGAAGCAACGGCAGAAACGGCAGCAGAGAAAGCGGAAGCAGCGAAGGC
AGCAGCGAAGGCAGCGGCAGCAACGGCAATGCTGCACACGTCCATCGAGA
CCCTCCGCGAGCGCCGAGATGAAGTCGTCGTCGAGGTGCGGGGAAAGGTG
AAGGCCCTCTTTCTGGAGCACCAGCCGTGGCTGCTGCCCCTGTGGCACAA
GGTGGAGGGACTTGCCCCCACGCGTGACATGATACTTGGCTCGTGGGATC
ATCTGGTGGAGCTCCTCCTTGCCGGTCACGAAAAGAAGCCGACCACCAAG
ACGGCGGCAACGTTCACCTTGGCGCGTATGAGAGAGTGGCCAGGGCGGCT
GAAGACCTGGATGGGCCACGAAGAAGTGCAACGTCTGGTGTATGGGACGA
TCAGGATTCAAGGCCTGCACTACCTTTGTAACATCCTCAATTTCGTAGAC
GAGGTGCGTTAGAAGAAGAGAGTTGCCTTCGTCGAGCAGTAGGTTGCGAT
TCCATCCGTTTTGCTGGGCGGTTGTTCGTATGACATCCTGGGATACATGT
CTGTAGGATGCCTCTTCGCTTCGCCTGCCACGCACCGCCCCGTGCTCCCC
GCGGTGCCCTACGTACATCTTGAAATTTTCGTTTATCGCAGAGCCCTCAC
CTCGACCCCCGCCTCCCCCCGTACCTCGATCGCGTGCTCGCCCTCGCCGC
GGTTTTTGATGCAGGAGCTGTACGGGGTGTTTGTGCGGTCTAGGAAAGAG
GCCAACATGATCCACCTCACCTACCCGAGCAAGGTAGCTACGCTTTCCCC
AGTGAGGTCGAGAGTCTTGTATTACATAGGCGGGTGGCTCGTGAGCAAGG
TGTGGCAGTACCAGTTCAGAAATGGTATCCCGCAGGGAGAGTGGATGTGG
TTCGTGATGAGAAATCATTCCAAGTCTGCTGCAGCCGCCCTAGAGTTGGA
CCCCGAACTGAAGGGCATGACTGACCTGGTTGAGGCGAGGAACGACCCTG
TGAACGGGGCGGGTCTCCTTTTTGTTTCGCATCGATTTTACGACTTTCTC
CTTACGGTGGAGAGTGCGTATGCCCACGTGTTCGAGCATCCGGTTTTCCT
GGCGGCACACCTAGGAAACTTGTCCGATAGATTGCTGACTCTCGTTACCG
AGTCAACGGTGGTAAAAAAAGCATGGACTGCGTGTTGCGATTTCGCAGCA
GGAAACGCAGGATTTGCGCCTAACATCAAGGTTCTCGAAGTGGTGAGGTT
GTTCTTGTTGGGTAGGTTTCACAACCTGCGTATGTACGAGTATACTATTC
GAATGTCGGAGGTCTCGTCCACTCTCGGCAAAGGCAAGGCAACGCAGCTC
GCTCTGCGGACAGGGCTCAAGGCTGGCAGCAAGAAGGCTGGGAGCGGCAC
GGGGGGGGGTGCTGCGAGCGGTACTGAGGGGGGGGCTGCTGATGCTGGAG
GGCAGTCTCGCTCGGGTCGGGGGTCGGGCAAAGGGGCTAAGAAGAAATCT
CAGAAACCTGCAACTCTCGAAGAGGTGAAAGGGATGGGGGAGGTAGAGTT
GGAGCTTTTAAAAAAAACTTGGCTCGCCGAACTTTGCGTGAAGGCGGGGG
CGGTAGCTAATCAATGGAAGCTCAAGCAGCACTTGGTTGTCAAGTTGATG
GATAAAATGGCTGTTATGTACGCGGACGGGGGGGTGTCCGCGACGAGTGG
GGGCGTAGACCAAGATTCGACGGGAGCGGGGGGTGCGGGGGGCGTTGCAG
AAGTTGGGGGAGAAGGGGGTGAGAGCATGAACATGCCGCATCCGGATGAT
TTCGAGATCGATCACGAGAGTGAGGCGTTGGAGCGGGAGAACGCGGAGTG
GTTGCGTGCTGTAGAAAATCTGGCCATTCAAACCGCGAGCGAGAAGGAGA
TTGAGGTGGAAGGCGTACAGGCGCACTCTCAATTCGATGATGCCTTCTTG
AATCAAGATGTCCCGGATGCACTTTGGCATGAAGGGGGTGACTCGGACGA
CGAGTTTGAGAGATTTGCTTTGTTCCTTCCCGATGATCTGGACGTGGATT
CCGACGGCGGTGTGGAGGAAAGCAAGGGCTGAGAGCTACGCAGGATTGGC
AGGAAAACAAACGGGCTGAATCCAAGTGTGTGCGGGCAGCGTTGCGCATG
AGTAATGTTTTTTCTTGTGAAACTACTCTTGCGTATGTATAGTTCTTTGC
GATGCCGACGGGAGTGGGAACGTTTGATGTGTTCATCCTCGGTAAAACTA
GTGTTGATTCAAACAAAGTACCTCCGGACGCGGACATTTATATATATACG
TTTTGTGTTTATTTTTTTACATCACTGGCGCACGAAGCGAGTGGACACAT
CGGGTGTGTCCATCAAACATCGCGTGGCATGAAGGCACAAGTTGGAGGCG
CGCATTCCCGGGACGGCCCCTCCCCGAGAAGTGCGCACGTGTGTGTTGTG
CTTCCTCAACACAGGACTTTTTTCTTGAAGTTTCCTCCGCCGATGAAAAA
AGCTTATCATACTTTTCCCGTGCGGGTTCCGTCGAAATTCCGCGCTCAAT
TTCGTCAACATATGGAAACAAGGAACACTGAAACACTAACATATGGAAAC
GAGGAACACTGAAACATTGAATGCCCCCAACGGACCAGTAAACTATACCA
ACGATCAGCAAAGTTTTCACGTCCTATTAGAACATGAACGCTCTATAGCA
CTTTACCCCCCCCCCTACAATAACCTAACAACTTACGCCGGGTAATTACA
AAATGGTGTGAAGCAATCATCACCGACCCGGACGGTGAAAACCCCTATTT
TATCCAGTACCAGGAACCCGCACAATGTCGGGTGTAACCTGCCTCTCTTG
TGGAGTGCCGAACCCTGCTCGCGATAAAAACCTCAAAGGCAGGTACCGCA
GGAGGGGGTCCAGCCCCCCCCTCCTATGTGACCCCGGTTGGGTCGTCTAG
CTAGCAGAAGTGGAGGATGGGGGCAAGAGGGGCAGACGACAGAGTCCAAC
AATGGGAGAATAAAACAAAACAACAAAAAAATTGTTCCCAACCACCGCAA
AAAGCACGTTGAGCTCGCCACCAAACAGTTCTCAGGGAAGAACACGGGTG
CAGGCGTATATTACGGGCCCGAAATCGTCACAGTTTCCAACCAGCCAAAG
CTCGTATAGGTAGTCCACCTACTACGTAAGAAACAACCGTGACACAGGAA
ATATACGACATCTTAGTGACCTTGAGTAAAGACTACGGCAGAGAGATCAA
ATCTGTACATGTACCCCATTCCAAATAAACTACAGCAGTGGCAACCAAGA
CCCGACTCTGTAGCTAACTCCTCGTCTACATAGTTCAGCCAACCAGGGCT
GCAGGGAGCGACGCTACCGGCACCGCCATACGATCCTGCGTTGAGACCTA
GTTTACTCCAAGTACCGCGGGGATAAAATTGCCTCGTACTTGTTCCAAGA
CCGCGCCCTGACGTAAGTGGCGCGCTCTGCCTTGCTCACGGCCAACATGA
TTTTGCCCCTGTAGTCGCTGACATTAAAGTCAGCCCCCTTTCGGGCATTG
AGGCTGGAGTTCATGCGGGAAGAGCCGTGAAGAGCTCTGATCTGGTCGCC
CAACGCAGAACGTTGCATGGCCTGGGCCGCAGTGGGAGCGTTGTGTGTTC
CCAGGCCCGCGCGGATGTGAGCAAAACGGTGCTCGAGGATGTCCTGTGCA
TGCCAAGGGAGGAAGAGGAGGGCGGGGGCGCGACACGGTGTAATATTTAG
AAGCCTCCAAATTATGCGGCGCGCCAGCCTTTTTCTGGCGAGTGGGGGGG
GGGCGTTTCACGAGAGGGGGCATATTGTCTGAGGTGGATGTCCTCAGGGC
ACTACGTTACAGTATTTGGCGTTTTATCTAGACACGGACGCGACCACTCA
CTGCTCAGATGCGCCGTCGCAAACGGTGGCGATGACGTCAAACGCCTTGT
CCTGGTGGGCGGCCGCGAGGAAACGCATGACCCTCACCACCATGCGCTGA
ATGTAGTCCGTGCTGAGCCCCTTCACAGCGTCGCGCCAGACGACAAACTT
GTACTCTGGCTTGCCGACACTGACGAAGAACATCTGCAGGCGACGAAAGA
TGAGTCGGGGGCATGCAGGAAGGCGGTGTGTCAGGATTGACGGTTATAAT
ACTCTTGTTGGAGGCAAAACATAGAAGATGTCACGTCCAACGCTATATAG
AGCCCGGTCGACAGCAAAGAAGCCTGTGATGCGGGGAGCCTGGGAACATA
CAACAATTACCTCGACATACTGGGAAGCGACCACCCGCTCGAGAGTGTTC
TCAAGACCCATACCTTCGTCTCCGCGCTCCTCGTAGACGGGGTTGAAAAA
GGTCGTCTCGTCCACGAGCCCCGAAATGCCGCCCGCGTTCGGCGCAAACG
TGAACCCGTTCTTGTTCAGATGCATCAGGTCCCACGCCAACACACCCGTC
AGATCCGCCGCGGACGCATCTTGCATAGCCGCGAGAATACCATCTTTCTG
TTGAAACAAACGACGGTTGGGAGAGCGTACCTGGAGTACCAGCACATCAC
AGGACATTCCACACTCTAGACAAAACACAACAAAAATAATACACTGAAGA
ACGTGGGGGCGGGGTAGCATACATGGAATTCTGTTCCATTCGAGGCGAAA
AAAAAAAAAATCAACACCGGCGGAAAAGTGTACCTCGAGTACGAGTACAT
CACAGGACATTGCACACTCCAGGCAAAAGAACAACAAGAATTACACAGAA
GGAGGGGAGCGAGGTACATAGAGACGTACGTGAAGGTCCGTTCCATTCGA
GGCGGAAAAAAAAAATACAACGGCGGAGAAGTGTACCTCGAGTGCGCACA
TCACAGGACATTCCACACTATATTTACATAGACACAACAACCTTTCAACT
AAAGGGGGGGGGGGCGTATACATGCCCTTATAACAATAAACGCCATTCCA
CACTCTAGGCGAGAAGACACACAAATGGGAAAGCGTACCTTGATGTTCTC
CACCAAGACACCCGTCCTCGGGCCCGCGGTCTTGGCCCGGATCTGCTGGA
TGCGCCTCGTGGTTGGGAGGTGCAGCATCGTACTCAGGATGTTGTACGCC
GCGGAACCAGCCACGCCTTGCAGATAGACAGCGATTCGCAGTGTAGCAGG
GTGGAACCGATACCCTCGTACTTTCCCGTTGGTTTCGTTCCACCTCTTCT
GATCCTGTCATATATCGGGAGTTACGACAGTAGGGTCGACCACACGAAGA
AAAGCTTCCAGTTAGATGCGATAGCGCACGCCGAACACGGCCAAATTATA
ATCACGGCTCATGCGCTGCCTTAAACAATACCATGGAAAACGTAAAACAA
CTCAACTAAAAAAACTATTTTTCAGTGCGCGACGGCTGGGAAAAAAACAT
ACCTCATACAACGCTCGCTGGTGGGTCCCCGGCGGACACTTCTTGTCGAA
GATCGCCTGCGTCTCGGGGTCGGAGAGGAAGGTGTGGAGAGCTTCCCCCT
GCTTGTCGCTGATCCGCACGAACTCCCTCCTCGCAGCTTTAAGTCGCTCC
ACCGCGCGGATCTTCGCTTCTCGCTCCTTCTTGATCTTTTGGCCGTTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig661:156377..163224-

>mRNA_P-littoralis_Contig661.100.2 ID=mRNA_P-littoralis_Contig661.100.2|Name=mRNA_P-littoralis_Contig661.100.2|organism=Pylaiella littoralis U1_48|type=CDS|length=252bp|location=Sequence derived from alignment at P-littoralis_Contig661:156377..163224- (Pylaiella littoralis U1_48)
ATGGGAGTCGGAGATGATACGGTTGGAGGTGTGCAGGATGCTCCATTTTC
GCCAGTCAGAAGAGGACCTATTTTCACAAAGGAGACGATTGGCGGTGACG
ACGCTTATAGCATGGACACCGACGAAGACGATCGGGTAGATCCCGATCCC
GACGCTGACAGGTTTACGCCGCAAGGTACGACAAAACACAGAACAATTGC
CGACCGCGCCTGTTGTGCGTCACTTTACCATCAGCGGGCTCGTTGTAGGT
GA
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