mRNA_P-littoralis_Contig660.36.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig660.36.1
Unique NamemRNA_P-littoralis_Contig660.36.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig660.36.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig660contigP-littoralis_Contig660:103482..104994 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size258
Hectar predicted targeting categorysignal anchor
Exons2
Cds size255
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791380.514235-CDS-P-littoralis_Contig660:103483..1035611680791380.514235-CDS-P-littoralis_Contig660:103483..103561Pylaiella littoralis U1_48CDSP-littoralis_Contig660 103484..103561 -
1680791380.5319068-CDS-P-littoralis_Contig660:104817..1049941680791380.5319068-CDS-P-littoralis_Contig660:104817..104994Pylaiella littoralis U1_48CDSP-littoralis_Contig660 104818..104994 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig660.36.1prot_P-littoralis_Contig660.36.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig660 103484..104994 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig660.36.1

>prot_P-littoralis_Contig660.36.1 ID=prot_P-littoralis_Contig660.36.1|Name=mRNA_P-littoralis_Contig660.36.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=85bp
KWSNRPRSKKAFFKKGFCSYNKWSFTAKKGKKEKRKKEKKETSVLTSYCL
TPVGAFTYTCGMASNYCKGMPTHTTDTIRSMILVL
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mRNA from alignment at P-littoralis_Contig660:103482..104994-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig660.36.1 ID=mRNA_P-littoralis_Contig660.36.1|Name=mRNA_P-littoralis_Contig660.36.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1513bp|location=Sequence derived from alignment at P-littoralis_Contig660:103482..104994- (Pylaiella littoralis U1_48)
AAGTGGTCAAACCGCCCAAGATCAAAAAAGGCCTTCTTTAAGAAGGGTTT
TTGCAGCTATAATAAGTGGTCTTTTACGGCAAAAAAAGGAAAAAAGGAAA
AAAGGAAAAAAGAAAAAAAAGAAACTTCAGTGTTAACTTCGTACTGTCTT
ACCCCGGTTGGAGCGTTTACCTACACGGTTGTTGTTTCTCACATTAGCTC
TTTTCTAGTATCTAGCGCCCGCGGTCACACCAAATGCTGGAGCCAAAGGA
AGATCCGAAGAACACAGAAATCAAACAGAAGAGCGCCTACGCACGTCGAA
GGAAGGCACTTCTTTGGACGTATTGTCCCTGTGTCCAGACTACTGAACTA
CGCACCACGGACAATCCTTCGGCTACAGCAGTCACCCCCGATCCCAATCC
CTCCTCCAACCAACTCTCGGCTGCTGGCTACAGTAGAACCCACTGTCTGG
AGTGCTGCCCGCACCGTACCACGTACGGTAGTCAAGTGGAGAGAACAGCA
TCGAAGACACATGCGCTGTCTGAAGTGCTGCCAAATATCATCCCGTCTAG
GTGTGCAGTAAAAGAGGGACAACAACCAAAGCCATCACACAACGACGCTA
AGTCCCTTCCCCTACATATCTATGTGTGGGTACATTGTGATTACGATACC
AGTAGTTGGAGAGAGTGGCTCGTTCCCCGGGAGGATTTTCAACGGCACTC
GCACTCCCTAAGGACGTACGTATAGGTATTTCTGCCGCATCTCTCTACAA
AACCAATGACGTCATCCCAACAACCTCTCATGAAAATACAGGGAAAAAGG
AAAAAAATCGAAGTCCGGTGTGGCTACGTTTTGCGGTCTATGTCGTCTCG
TGCTTTGGCGTTGCCGATGGCCAACCCCTAGCACCGCTACTCTCGAGTCG
CGCCAGTGTCCATACTCTCGTTGTCGTCCCTCCCCAGTCGATTCCTCGCT
CTCTCCTCGTTGCATTTGGGGTACTGATCTTGAAATTTCTCGCGAGGTGA
AGGGTCGATCAGCCCTGATACCTCTCGTCGCTGCTCCTCCTCCCACATCT
TCTCCGTCATTCCCTCCCAGCGAATCCTGCTTACTCCCCTCAGCTCCACC
CTAGCACACCAGCCAGAGTCACTTTGCTGCTGGCTTTCCGCCTTGATACG
TCTGCCTCCGCGCACATGTTTGCGAGATGTGCATTGCTGCCCTGCCGCAG
ATGCCAAAAATGGCTCGCGATTCTGACAAAAATGTGCCTGGCGCACCAAG
TTGACCCAACTACACCACCACGTTGGAACTCGTGGTCCCACGGTGGCAGC
AAGAAGGTATCACTCCTCGAGGGTGAGTCCAGCCTTACTTGCTGGGAAAG
ACCCCCCCCCCTCGCTTTGGATCATTCCTAAAGCAGACCATGCCGAAGCA
TCTAGAGGCCTATGGAGGGGGAACGGACTGTAGTGTGGAATGGCGTCCAA
TTACTGTAAAGGGATGCCAACCCACACAACAGACACTATACGTTCGATGA
TACTAGTTTTAAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig660:103482..104994-

>mRNA_P-littoralis_Contig660.36.1 ID=mRNA_P-littoralis_Contig660.36.1|Name=mRNA_P-littoralis_Contig660.36.1|organism=Pylaiella littoralis U1_48|type=CDS|length=255bp|location=Sequence derived from alignment at P-littoralis_Contig660:103482..104994- (Pylaiella littoralis U1_48)
AAGTGGTCAAACCGCCCAAGATCAAAAAAGGCCTTCTTTAAGAAGGGTTT
TTGCAGCTATAATAAGTGGTCTTTTACGGCAAAAAAAGGAAAAAAGGAAA
AAAGGAAAAAAGAAAAAAAAGAAACTTCAGTGTTAACTTCGTACTGTCTT
ACCCCGGTTGGAGCGTTTACCTACACGTGTGGAATGGCGTCCAATTACTG
TAAAGGGATGCCAACCCACACAACAGACACTATACGTTCGATGATACTAG
TTTTA
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