mRNA_P-littoralis_Contig660.32.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig660.32.1
Unique NamemRNA_P-littoralis_Contig660.32.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig660.32.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig660contigP-littoralis_Contig660:95589..96169 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size581
Hectar predicted targeting categorysignal peptide
Exons1
Cds size348
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791380.8161387-CDS-P-littoralis_Contig660:95588..959361680791380.8161387-CDS-P-littoralis_Contig660:95588..95936Pylaiella littoralis U1_48CDSP-littoralis_Contig660 95589..95936 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791380.8267026-UTR-P-littoralis_Contig660:95936..961691680791380.8267026-UTR-P-littoralis_Contig660:95936..96169Pylaiella littoralis U1_48UTRP-littoralis_Contig660 95937..96169 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig660.32.1prot_P-littoralis_Contig660.32.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig660 95589..95936 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig660.32.1

>prot_P-littoralis_Contig660.32.1 ID=prot_P-littoralis_Contig660.32.1|Name=mRNA_P-littoralis_Contig660.32.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=116bp
VWWRIICLLLTAVLLLLQNSWWGARVRVRLRQHNEHRTPLIIFHKKGTPI
IPRLQQGSCAHRRRASVNPAVVGRCYLPHQFKPLVVAICAELVPKCCKMW
PLSRTHRHHKPPKLN*
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mRNA from alignment at P-littoralis_Contig660:95589..96169+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig660.32.1 ID=mRNA_P-littoralis_Contig660.32.1|Name=mRNA_P-littoralis_Contig660.32.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=581bp|location=Sequence derived from alignment at P-littoralis_Contig660:95589..96169+ (Pylaiella littoralis U1_48)
GTTTGGTGGCGTATAATATGCCTGCTGCTCACAGCAGTCCTGCTGCTGCT
GCAGAACAGCTGGTGGGGTGCTCGTGTGCGTGTGCGCCTGCGCCAGCATA
ACGAACACAGAACGCCTCTCATCATTTTTCACAAAAAAGGGACCCCAATA
ATACCGCGCCTCCAACAAGGTAGCTGTGCGCACAGGAGACGGGCTTCGGT
GAACCCAGCAGTAGTGGGTAGATGCTATTTACCTCATCAGTTCAAGCCCT
TGGTCGTAGCGATTTGTGCTGAACTGGTGCCAAAGTGTTGTAAAATGTGG
CCATTATCTCGGACACACAGACACCATAAACCTCCAAAATTAAATTAAAA
GGCACCCCTGTCTCCGATTTCATTTTATTTTTCTTATTAGCACATACACT
CACACCTGTACATCACGACAAGTCGGTATGAAGTCCAAGCAGTTCCACAA
GGAACTTACACTTAGCTTAGCTCGTTGCCTGCTTTTCCATACATGTAGAG
TGGCAAAAAAATAAAACAATAAACGCTTGTCACAGAGTTTCAAACCTGCA
ACCTTGCTCTCTTCTTGCTCTCCAGGTCAGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig660:95589..96169+

>mRNA_P-littoralis_Contig660.32.1 ID=mRNA_P-littoralis_Contig660.32.1|Name=mRNA_P-littoralis_Contig660.32.1|organism=Pylaiella littoralis U1_48|type=CDS|length=348bp|location=Sequence derived from alignment at P-littoralis_Contig660:95589..96169+ (Pylaiella littoralis U1_48)
GTTTGGTGGCGTATAATATGCCTGCTGCTCACAGCAGTCCTGCTGCTGCT
GCAGAACAGCTGGTGGGGTGCTCGTGTGCGTGTGCGCCTGCGCCAGCATA
ACGAACACAGAACGCCTCTCATCATTTTTCACAAAAAAGGGACCCCAATA
ATACCGCGCCTCCAACAAGGTAGCTGTGCGCACAGGAGACGGGCTTCGGT
GAACCCAGCAGTAGTGGGTAGATGCTATTTACCTCATCAGTTCAAGCCCT
TGGTCGTAGCGATTTGTGCTGAACTGGTGCCAAAGTGTTGTAAAATGTGG
CCATTATCTCGGACACACAGACACCATAAACCTCCAAAATTAAATTAA
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