mRNA_P-littoralis_Contig66.70.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig66.70.1
Unique NamemRNA_P-littoralis_Contig66.70.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig66.70.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig66contigP-littoralis_Contig66:258954..262208 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size452
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-00_011380.1
Cds size261
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791373.301482-UTR-P-littoralis_Contig66:258953..2591421680791373.301482-UTR-P-littoralis_Contig66:258953..259142Pylaiella littoralis U1_48UTRP-littoralis_Contig66 258954..259142 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791373.3133247-CDS-P-littoralis_Contig66:259142..2593091680791373.3133247-CDS-P-littoralis_Contig66:259142..259309Pylaiella littoralis U1_48CDSP-littoralis_Contig66 259143..259309 +
1680791373.326579-CDS-P-littoralis_Contig66:262114..2622081680791373.326579-CDS-P-littoralis_Contig66:262114..262208Pylaiella littoralis U1_48CDSP-littoralis_Contig66 262115..262208 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig66.70.1prot_P-littoralis_Contig66.70.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig66 259143..262208 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig66.70.1

>prot_P-littoralis_Contig66.70.1 ID=prot_P-littoralis_Contig66.70.1|Name=mRNA_P-littoralis_Contig66.70.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=87bp
MAEGEEAVGTGMGDGDDGGSTAQTHYVGIESRLRARIAELEEENDVLALC
ATEVNRLTARVAELEKENKALSDANSRLVPQRSGGGG
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mRNA from alignment at P-littoralis_Contig66:258954..262208+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig66.70.1 ID=mRNA_P-littoralis_Contig66.70.1|Name=mRNA_P-littoralis_Contig66.70.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3255bp|location=Sequence derived from alignment at P-littoralis_Contig66:258954..262208+ (Pylaiella littoralis U1_48)
GCCTTTTGGTTCTTGGTCCGTGGTTCTCTAACAGGGCGGTCCTTTAGAAC
AGCAGGTGCAGATGGGTTTGCTGACTTCCTGCAGGGTTTGCCTGACAGGC
TGAGCTGGTTGGCCGTGTGAGTAACACGCCCATACTGTAGCAGCGGCAGA
GACCCTTGCCCGGCAGGCAGACGTTCAACAAAGTCAGTCATGGCAGAAGG
AGAAGAAGCAGTAGGAACGGGCATGGGAGATGGTGATGACGGTGGTTCAA
CCGCTCAAACGCATTATGTAGGTATCGAGAGCCGGCTTAGAGCACGCATT
GCTGAGCTGGAAGAGGAAAACGACGTTCTCGCTCTTTGCGCCACCGAAGT
TAACAGGCAAGATGATCTACGGCAAAAGTTCAAAGTAGAGGATCTGCGTT
TTGGTACTGCAGCCGTGATGTCTTTTTTTGGCGACACCAGGTAGCTAATT
TCGATTCGAAATTCTCATGGGGTTCCTCGGTACAGGTTTTCGACGTTGGT
GACAACTACCGCTGTATGTATTCAGCCACGCAGTAATGCACAGAAGTATT
TTTGGACGGTAATCGGTCATCTCCGTACATTCACCACGGGACTCTGAACC
TCCACGGCATCGCACAGCAGTATCTTTTGGACGGCAATCGGTCATCACGG
TATATCCACCGCGGTATTCAGCCACCACGGTAATGGTACGGTATTCTCGG
CCACCACGGTTTTACCCATACGGTTCTTTTTTTAGTTTTTTTTAGTTGTG
CGTGTTGCTCCTGCGGGTAGTGTCGCAACGTGAGCACGTTCGTTCACAGA
ACAACCAAACGCAACACACACCGGCAGCCATTCGCAGCCAAAAGATGGCG
ACCGAAAGCAAGAGCTACGCCCAGCGATGCCAACCATCGGTAGTTAACAA
CAAGACCAAATCCACCCGTGAAATAACCCGCCCCCCTCTTCCAAAGCACG
TTATTCTACCGTGGTATGATATCATGCTGTCACGTTGACACAACACACAT
GGCAAAGGCTTCTGCCTCGTAATAACAGCTGGATACTTCGAACTTCGAAG
TAACAAGTAACAGCAGTTCAACAAACATATACGGAGTACTTCGTATACAT
CGATACACAACCAACATCGGCTGCGGCTGCTGCAGCAGCACCACTCGCCG
CCGAAGCACCCGTGGCAACCGATAACGCCTCCTCGCCCACGACATTTCCG
GTCCCACCTACGTTCTGGCCACCTTCCATGACTGCTTACCCTCGGTTGTG
GTGTGTTCTGGGTTGGTATGATACGTCCGTACACGACTGGTTGCTGTGAG
CCACCGGCTTCAATTGATTTACAACGTTTTTAACAAAAAATTGAAGGAAG
AAAAAGGAAAAATAAATCCGAGAACGCGAGGGCGTCTCGAACCTTCGAGA
TGCTGACGCGTGCAAAATGTTCCAACGCTGATGTGCGAGGTATTTTGAGA
TACTGCGGTAAACGACGTCCGTTGCTACACAGTAGTTGGAAGTTTGTTTT
TTTCGCGGTAAACCTTACCGCGGTATCGAGAAACCGCGGAAATTCCAATA
TTTGCACGGTAACGGTATGATTGGTATTGGTAAAATGTTTGTTCTCGGAA
ACGTTTTGGATGGTAACGGTATCGCACAATTTGGGTGGCAACAGTTTGGA
TGGTAAGGGTATTTCCTATTTATCGCGGTATTGTTACCAATTACCAAATA
CCGCGGAAATATTGCGATGATTTACCCCGGTAAAACTACCAAGGAACCCC
CTGGAAATTCTTATCGCTGTGAGAACGCGTGTGTGTTGTCGTTCGTTGCG
CCTCTTGGGACCGGTAACCAGTTCGTGAAACATCTGCGACAAGTTACAAG
TGACAAAACACAACGGGTGCACCGGGTATAATTATTTCGCCCTGTCCTTC
AATGCTCATATATATGATTCACACCCATATGCAGTTGTCAGGCAGCTCAG
CAGCATACCGGTACTACTGTAACAGAGTTTTCGAGCAGGCGTAGCACCCG
CTGCGATCACTCCACGTCCACTGGAAAGCTGGGTGACTATATCGAACACA
GGTACACCCTACGGTAGTGTACGGTCGCCGTTTCAGCTCTGTTCCTTGAC
TGCTGTTGTCTGCTTAAGGTAGGTGGGGCAGGGAGGGAAGAGGGCAACTC
AAGCGGGGCAAATCTGCCTGCTGCTACTGCGGCGGCGGCGGCGGTTGCCG
TCCTCTGTGGGTATACAGAAGGCCGACGGTACGGGTTTTGTCGGCGGTAA
CAACTGCTCTGAGATGCTCAAGCACGCCCGCCTTCGCTCTGCTGCACACC
GTGTGATCTACATAGATGGATAAACACACTTTTAAATGCTGCAAGTACCA
TTTTTTCTGTTTTCAGGATTCGGCTCTGTAACGTGGCACCCTTTCGGCGA
CAGCTATACATTGTCAGCGACCCATGGATGCATGCTGCCACACGTGCTGC
GGGTACTGCCGTGCTACGCAGCAGGCTAGTATCGAAGTTCAACGAGAAAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGACTGAGAAAGCGGGCGTCTTTATTGAGA
GAGCGATGACGGGCAGCGCCAGTCAAAAGCACCACAACCTTACGAGGAGG
ACTTTTACTGTCATCACCACCGAAACAGCGGCGGCGGTGCACCGAACCAA
CAACTGTCATCACCGCTTAACGTGTGGAGTGCAGTCGATAGGCAGCAGCC
GCTGGAAAGGCAAGGAACAAAACTTTTTGAGGAGGAGATTCGTATGTTTT
TCCTCGGGGGGGCGGAGGGGCGGAATATGCCAAGATCTGTGACGGTTGTC
GTCAAATATAAACTGTGATGGCTGTCGTCATATGTGAACTGCCGCGACGG
TTGTCGTCAAATGTCGAAGTTGAAGGTTTCGTGAAAGATACAGCAGGCAC
GCAGTCGGACCTTCGAGGTCATGAAGAGTACACCACCACGCAGTAACCAA
CAAACAGCAGAGACAACACTGCCGGCACCGGCACCGGCACCAGCAGCACC
GGCAACAACAAACATAACCAAAACACCCGTCACAAAAAAAGTATCGCGTA
ACGCAACGCTGTCATTAACCTCACTATTTATCATTATTTTCTGTTTTTCA
TCTCGCAACAGGTTGACCGCGAGAGTGGCCGAGCTCGAGAAAGAAAACAA
AGCCCTGTCCGACGCCAACAGCCGCCTAGTACCGCAAAGGAGCGGAGGAG
GAGGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig66:258954..262208+

>mRNA_P-littoralis_Contig66.70.1 ID=mRNA_P-littoralis_Contig66.70.1|Name=mRNA_P-littoralis_Contig66.70.1|organism=Pylaiella littoralis U1_48|type=CDS|length=261bp|location=Sequence derived from alignment at P-littoralis_Contig66:258954..262208+ (Pylaiella littoralis U1_48)
ATGGCAGAAGGAGAAGAAGCAGTAGGAACGGGCATGGGAGATGGTGATGA
CGGTGGTTCAACCGCTCAAACGCATTATGTAGGTATCGAGAGCCGGCTTA
GAGCACGCATTGCTGAGCTGGAAGAGGAAAACGACGTTCTCGCTCTTTGC
GCCACCGAAGTTAACAGGTTGACCGCGAGAGTGGCCGAGCTCGAGAAAGA
AAACAAAGCCCTGTCCGACGCCAACAGCCGCCTAGTACCGCAAAGGAGCG
GAGGAGGAGGA
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