mRNA_P-littoralis_Contig66.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig66.3.1
Unique NamemRNA_P-littoralis_Contig66.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig66.3.1 vs. uniprot
Match: D7FZI4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI4_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 7.990e-28
Identity = 60/105 (57.14%), Postives = 74/105 (70.48%), Query Frame = 1 
Query:   97 PWRKEGVDGLYFDRDADS-YDNVDGDPVFSTGIAVSSDGFNYWSFGGKVYNVNATYVALSCLSPALLRRLRSWSLVCAGSKGR-WEEEVGGLMETIQHLEKGCRA 405
            PWR++G  G +FDR A   + N+ G PVFSTG+A SSD FNY+S  GK Y+VNAT+V L CLSPALLRRLRSW L   G  G  WE +V  LM+ I+ L+ GC+A
Sbjct:    3 PWRQQGYHGWFFDRRASGVHANLTGLPVFSTGLACSSDAFNYFSLSGKRYSVNATFVGLGCLSPALLRRLRSWHLATLGLPGAAWELDVLPLMKIIRLLQNGCKA 107
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BLAST of mRNA_P-littoralis_Contig66.3.1 vs. uniprot
Match: A0A6H5JXS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXS6_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 3.950e-15
Identity = 37/69 (53.62%), Postives = 48/69 (69.57%), Query Frame = 1 
Query:  199 SSDGFNYWSFGGKVYNVNATYVALSCLSPALLRRLRSWSLVCAGSKGR-WEEEVGGLMETIQHLEKGCR 402
            SSD FNY+S  G+ ++V+AT+V L CLSP LLRRLRSW L   G  G  WE ++  LME I+ L+ GC+
Sbjct:   60 SSDAFNYFSLSGRKHSVSATFVGLGCLSPTLLRRLRSWYLATLGLPGAAWELDILPLMEIIRWLQNGCK 128
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig66.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FZI4_ECTSI7.990e-2857.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JXS6_9PHAE3.950e-1553.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig66contigP-littoralis_Contig66:7536..7955 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size420
Hectar predicted targeting categoryother localisation
Exons1
Cds size420
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791374.087437-CDS-P-littoralis_Contig66:7535..79551680791374.087437-CDS-P-littoralis_Contig66:7535..7955Pylaiella littoralis U1_48CDSP-littoralis_Contig66 7536..7955 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig66.3.1prot_P-littoralis_Contig66.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig66 7536..7955 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig66.3.1

>prot_P-littoralis_Contig66.3.1 ID=prot_P-littoralis_Contig66.3.1|Name=mRNA_P-littoralis_Contig66.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=140bp
MTSQELNEQVPTFLGEGFVTFLTNPRRVKEQRPWRKEGVDGLYFDRDADS
YDNVDGDPVFSTGIAVSSDGFNYWSFGGKVYNVNATYVALSCLSPALLRR
LRSWSLVCAGSKGRWEEEVGGLMETIQHLEKGCRARMKTQ
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mRNA from alignment at P-littoralis_Contig66:7536..7955+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig66.3.1 ID=mRNA_P-littoralis_Contig66.3.1|Name=mRNA_P-littoralis_Contig66.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=420bp|location=Sequence derived from alignment at P-littoralis_Contig66:7536..7955+ (Pylaiella littoralis U1_48)
ATGACCTCGCAGGAATTGAACGAGCAGGTGCCTACATTCCTCGGTGAAGG
GTTTGTTACTTTTCTCACCAACCCCAGACGGGTGAAGGAACAACGACCGT
GGAGGAAGGAGGGCGTGGATGGCTTGTACTTCGACAGAGACGCCGATAGC
TACGACAACGTTGATGGCGACCCTGTATTTTCGACGGGGATTGCTGTCTC
CAGCGACGGCTTCAACTATTGGTCGTTCGGGGGGAAAGTCTACAACGTCA
ACGCCACGTACGTGGCTCTGAGCTGTTTGTCACCCGCTCTCCTACGACGC
CTACGTTCATGGTCGTTGGTGTGTGCGGGTTCGAAGGGGCGTTGGGAGGA
GGAGGTCGGCGGACTAATGGAAACCATTCAGCACCTCGAGAAAGGCTGTC
GCGCAAGAATGAAGACTCAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig66:7536..7955+

>mRNA_P-littoralis_Contig66.3.1 ID=mRNA_P-littoralis_Contig66.3.1|Name=mRNA_P-littoralis_Contig66.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=420bp|location=Sequence derived from alignment at P-littoralis_Contig66:7536..7955+ (Pylaiella littoralis U1_48)
ATGACCTCGCAGGAATTGAACGAGCAGGTGCCTACATTCCTCGGTGAAGG
GTTTGTTACTTTTCTCACCAACCCCAGACGGGTGAAGGAACAACGACCGT
GGAGGAAGGAGGGCGTGGATGGCTTGTACTTCGACAGAGACGCCGATAGC
TACGACAACGTTGATGGCGACCCTGTATTTTCGACGGGGATTGCTGTCTC
CAGCGACGGCTTCAACTATTGGTCGTTCGGGGGGAAAGTCTACAACGTCA
ACGCCACGTACGTGGCTCTGAGCTGTTTGTCACCCGCTCTCCTACGACGC
CTACGTTCATGGTCGTTGGTGTGTGCGGGTTCGAAGGGGCGTTGGGAGGA
GGAGGTCGGCGGACTAATGGAAACCATTCAGCACCTCGAGAAAGGCTGTC
GCGCAAGAATGAAGACTCAA
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