mRNA_P-littoralis_Contig66.215.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig66.215.1
Unique NamemRNA_P-littoralis_Contig66.215.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig66.215.1 vs. uniprot
Match: A0A6H5J557_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J557_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 5.970e-28
Identity = 79/198 (39.90%), Postives = 108/198 (54.55%), Query Frame = 3 
Query:  174 LPLVTNDLSAMLLTTIGNCSKENSRHLAMVQNAAVYYQCLVTKRKIGTTNTEGRDAHAKQNYLDHTVPGFFAWWNKSCKLPIPTWLTPKLMGQSTLTDQTNRLYTVDGAIW---SKYSEAGKIIKRDFNLLWDSFRTADGELPSGQQETDAWENLQDGLYYTWKKENEKVKMRNKRNKVAKNNPVVLTGGEGNQTLSG 758
            L L  N+ S  LL  + + +K+  +HL+++QNAA YYQCLVTKR+ GT +T+ RDAHA+ NY + TVP F  WW        P+WLT  LMG +T  D  +   TV    W   S Y  A +            F   DG+LPSG Q  D WENLQ  L++  ++   + K     N  AK+ P+VLTG +  +T +G
Sbjct:    6 LLLPRNEHSDDLLEYLSH-TKQTPKHLSLIQNAAAYYQCLVTKREAGTMSTQQRDAHARTNYKNFTVPSFLCWWKTVVIQTPPSWLTQDLMGMTTGNDSGSTTPTV----WFGPSTYRVAVRSGGTSTESGTGDF-LVDGDLPSGMQAEDIWENLQLYLWFEDRRTAGRKKEVAAANARAKSQPIVLTGDDDGETEAG 197
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BLAST of mRNA_P-littoralis_Contig66.215.1 vs. uniprot
Match: A0A6H5KNK2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNK2_9PHAE)

HSP 1 Score: 49.7 bits (117), Expect = 8.140e-5
Identity = 25/52 (48.08%), Postives = 37/52 (71.15%), Query Frame = 3 
Query:  174 LPLVTNDLSAMLLTTIGNCSKENSRHLAMVQNAAVYYQCLVTKRKIGTTNTE 329
            L L  N+ S  LL  + + +K+  +HL+++QNAA YYQCLVTKR+ GT +T+
Sbjct:    6 LLLPRNEHSHDLLEYLSH-TKQTPKHLSLIQNAAAYYQCLVTKREAGTMSTQ 56
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig66.215.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J557_9PHAE5.970e-2839.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNK2_9PHAE8.140e-548.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig66contigP-littoralis_Contig66:671330..673608 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size825
Hectar predicted targeting categoryother localisation
Exons3
Cds size762
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791380.3126273-CDS-P-littoralis_Contig66:671329..6715881680791380.3126273-CDS-P-littoralis_Contig66:671329..671588Pylaiella littoralis U1_48CDSP-littoralis_Contig66 671330..671588 -
1680791380.3263893-CDS-P-littoralis_Contig66:672451..6725451680791380.3263893-CDS-P-littoralis_Contig66:672451..672545Pylaiella littoralis U1_48CDSP-littoralis_Contig66 672452..672545 -
1680791380.3383417-CDS-P-littoralis_Contig66:673137..6735461680791380.3383417-CDS-P-littoralis_Contig66:673137..673546Pylaiella littoralis U1_48CDSP-littoralis_Contig66 673138..673546 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791380.3517134-UTR-P-littoralis_Contig66:673546..6736081680791380.3517134-UTR-P-littoralis_Contig66:673546..673608Pylaiella littoralis U1_48UTRP-littoralis_Contig66 673547..673608 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig66.215.1prot_P-littoralis_Contig66.215.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig66 671330..673546 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig66.215.1

>prot_P-littoralis_Contig66.215.1 ID=prot_P-littoralis_Contig66.215.1|Name=mRNA_P-littoralis_Contig66.215.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=254bp
MHGASPTASSPVAFAAVYAHAGNTRTPSLSSMEEIFPLPLVTNDLSAMLL
TTIGNCSKENSRHLAMVQNAAVYYQCLVTKRKIGTTNTEGRDAHAKQNYL
DHTVPGFFAWWNKSCKLPIPTWLTPKLMGQSTLTDQTNRLYTVDGAIWSK
YSEAGKIIKRDFNLLWDSFRTADGELPSGQQETDAWENLQDGLYYTWKKE
NEKVKMRNKRNKVAKNNPVVLTGGEGNQTLSGESTAARDKAQQQSEEEVA
AARQ
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mRNA from alignment at P-littoralis_Contig66:671330..673608-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig66.215.1 ID=mRNA_P-littoralis_Contig66.215.1|Name=mRNA_P-littoralis_Contig66.215.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2279bp|location=Sequence derived from alignment at P-littoralis_Contig66:671330..673608- (Pylaiella littoralis U1_48)
TTCTGTGTGCACAAAAGTCGAGTTTTTAGGTAGCCGATAGGGGGTGCGAA
GTAGTGCCGAATATGCACGGAGCCTCTCCAACTGCATCCAGCCCAGTCGC
CTTCGCTGCTGTGTATGCACACGCCGGCAACACGCGCACGCCCTCTCTCA
GCAGCATGGAGGAAATTTTTCCTCTACCCCTGGTCACTAATGACCTCTCG
GCTATGCTGCTCACAACCATCGGGAATTGTTCCAAGGAGAACTCGAGGCA
TCTAGCGATGGTTCAAAACGCGGCTGTGTACTATCAGTGCCTCGTCACGA
AGCGCAAGATCGGCACCACCAACACCGAAGGACGGGATGCGCACGCAAAG
CAGAACTACCTCGACCACACCGTTCCTGGTTTCTTTGCCTGGTGGAATAA
GTCCTGCAAGCTGCCGATTCCTACGTGGCTGACGCCGAAGCTCATGGGCC
AGAGCACGCTGACTGACCAAAGTGAGATGCGGAAAGATTTGTAGGGTGGA
GCAGCTGCAGCAGCAGCTGCTGCACAGCTGCTGCGGCGGCAGCAGTAACA
GCAGTACCGGTACCAGTGTTTGCGTGCCACAAACTCTCAAGCAGGCTCAC
ACCAGCTATTTTTCGCCTCTGTGCTGTTTCAGCCTTCGATTGCGAGTTCA
TCTGCTGGCACATCCAATAGGGTTTGCTGCACACATCATATCTTGGAATA
ACTTTGTCGAGAAAGAAAAAGAAACAACAGCAGTACTGCTGTATCTGATA
CGTATAATTTGCTCGTTCCCGAGGACAGCAGTACAACAGCAGCAGTATAT
ACAAGACCACGCCTCTGCATCACGAACGACGCACATCCGACGAACCGTGT
GCATTGTGCGGCAACACTCGTCTACCTGATTTATTATTAATTATTTACAT
AGTTTTGTTTGTATTGCTGCCCAGTGCTTTGGCTTGTTCATAGCTTGAAG
CCCTTTGCCGAGGGAGACGCTCGAAACCATGCCGACATATCAGTGCTTGA
CGAATAGCCCTCCACCCCGTTGGCCTCCTCGTTGCGTCCCGTCACGTTGT
TGCCTCCGTGCAGCTAACAGGCTGTACACAGTTGATGGTGCTATCTGGAG
CAAGTACTCGGAAGCTGGCAAAATTATTAAGAGGGACTTCAACCTCCTCT
GGGACAGGTGAGCGGTGATGACGGTGTTCCCAAGTACTTTTGTAGACCTG
TTTGCCAGATACAATCGACAAATCAAGATCGAGGTTATAGGTCCTAGCGC
AACAGACCTCGTGGTGTGATACGGATGACACGGCAGGGTTTGCCTGCAGA
TCAACGCAATGAACATGAATATAGGTACAGGCACCACCCGTTTGAGAAGC
CGAAGACATCTATTGATGAGTGACTAGCGGTCATGTAGGCGATGGCGCAG
GTCCGAGCCCGCATCATATACATGGTCGCTGCAAGATGGGTGACACGCAC
TAAATACGACCGACAAACAGCAGCAGTAGACAGCATCAGGGTGCTCTGTT
TTCTCGTCTGCTTCGCACGTTTGTGAGCCAATGTTGAAGAATGGCTCCAA
ATACCACTAATGCCACAAAAGTTTTTTCCGTTTTCTCGCAAAAGGGGTGT
AAACCTCCGGTTGGTCGCTGCATATGTGCCATGTCTCTTGTTGCGTTAAA
TGAGCTCCACGAGTAAACGTTACCGCTGCAAGTGTTCCGCCAATTTCTGT
GCGTTCTTGCGTACCCAACTTCACGCCCCTAGCCGCCAAGGTATTTGCGT
GTGTGCCAAACACTTTGGTCTGGCTCTCTACGCTCTCGTTCACGTGATGA
TTGGTGTACATTTTCTCTACTGGTAGTCGACTCGAGGATCTGACTTTTGT
TTTGCACGTTTGACAATTCCAAGTACCACGCGCAGCTCATACTATCGTGC
GTCGGAGCTCGGACCATCTATATCTCAATCTGTTGGTCGAAGACGACACG
GCATGCTCGCCAGAAAATTTACCAAAGGTTTTTTGTTGTCGAATCCTCTG
CGTTCCGTGTTCGTTGCCAGTTTTAGGACAGCAGATGGTGAACTTCCTTC
AGGACAGCAGGAGACCGACGCCTGGGAAAACCTGCAGGACGGGCTATACT
ACACCTGGAAGAAAGAAAACGAGAAGGTGAAGATGCGGAACAAGCGAAAC
AAAGTGGCGAAGAATAATCCCGTGGTGTTGACGGGAGGCGAGGGGAACCA
AACACTGTCCGGGGAGTCGACGGCAGCCCGGGATAAGGCACAGCAGCAGT
CGGAGGAGGAGGTGGCTGCAGCAAGGCAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig66:671330..673608-

>mRNA_P-littoralis_Contig66.215.1 ID=mRNA_P-littoralis_Contig66.215.1|Name=mRNA_P-littoralis_Contig66.215.1|organism=Pylaiella littoralis U1_48|type=CDS|length=762bp|location=Sequence derived from alignment at P-littoralis_Contig66:671330..673608- (Pylaiella littoralis U1_48)
ATGCACGGAGCCTCTCCAACTGCATCCAGCCCAGTCGCCTTCGCTGCTGT
GTATGCACACGCCGGCAACACGCGCACGCCCTCTCTCAGCAGCATGGAGG
AAATTTTTCCTCTACCCCTGGTCACTAATGACCTCTCGGCTATGCTGCTC
ACAACCATCGGGAATTGTTCCAAGGAGAACTCGAGGCATCTAGCGATGGT
TCAAAACGCGGCTGTGTACTATCAGTGCCTCGTCACGAAGCGCAAGATCG
GCACCACCAACACCGAAGGACGGGATGCGCACGCAAAGCAGAACTACCTC
GACCACACCGTTCCTGGTTTCTTTGCCTGGTGGAATAAGTCCTGCAAGCT
GCCGATTCCTACGTGGCTGACGCCGAAGCTCATGGGCCAGAGCACGCTGA
CTGACCAAACTAACAGGCTGTACACAGTTGATGGTGCTATCTGGAGCAAG
TACTCGGAAGCTGGCAAAATTATTAAGAGGGACTTCAACCTCCTCTGGGA
CAGTTTTAGGACAGCAGATGGTGAACTTCCTTCAGGACAGCAGGAGACCG
ACGCCTGGGAAAACCTGCAGGACGGGCTATACTACACCTGGAAGAAAGAA
AACGAGAAGGTGAAGATGCGGAACAAGCGAAACAAAGTGGCGAAGAATAA
TCCCGTGGTGTTGACGGGAGGCGAGGGGAACCAAACACTGTCCGGGGAGT
CGACGGCAGCCCGGGATAAGGCACAGCAGCAGTCGGAGGAGGAGGTGGCT
GCAGCAAGGCAA
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