mRNA_P-littoralis_Contig66.151.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig66.151.1
Unique NamemRNA_P-littoralis_Contig66.151.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig66.151.1 vs. uniprot
Match: D7FN01_ECTSI (Hpt domain protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FN01_ECTSI)

HSP 1 Score: 225 bits (574), Expect = 3.020e-71
Identity = 113/147 (76.87%), Postives = 127/147 (86.39%), Query Frame = 2 
Query:  122 SEKRLSELDSANLVGVQLGVPDGTEVIDWAAAVDQCSGDVSFLEELLVDLWNESNAHFQQLKTFVPCGAMLDTQHEAHSIKGAAANLMCHRFRLAALYMERAGQAGTRLEEGSDEFTAVKGYLEKGLEVLEEELRLFEGMLKKKKLI 562
            SEK   +  SANLVGVQLGVPD TEVIDWAAAVDQCSGDVSFLEELLVDLWNESNAH +QL+ F+P GAM DTQHEAHSIKGAAANLMCHR RL+ALY+ERAGQ GTRL+EGS +F +VK  L+KG +VLE EL LF+ +LKKKKL+
Sbjct:   12 SEKSSDQGSSANLVGVQLGVPDDTEVIDWAAAVDQCSGDVSFLEELLVDLWNESNAHMEQLREFIPRGAMRDTQHEAHSIKGAAANLMCHRLRLSALYLERAGQVGTRLQEGSSDFNSVKEDLKKGQQVLERELSLFQDLLKKKKLV 158
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BLAST of mRNA_P-littoralis_Contig66.151.1 vs. uniprot
Match: A0A7S2XTL1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XTL1_9STRA)

HSP 1 Score: 108 bits (270), Expect = 6.630e-25
Identity = 62/122 (50.82%), Postives = 80/122 (65.57%), Query Frame = 2 
Query:  197 VIDWAAAVDQCSGDVSFLEELLVDLWNESNAHFQQLKTFVPCGAMLDTQHEAHSIKGAAANLMCHRFRLAALYMERAGQAGTRLEEGSDEFTAVKGYLEKGLEVLEEELRLFEGMLKKKKLI 562
            VI+WA A++Q   D  FL ELL DL+NE+ AH + LK  VP       + +AHSIKGAAANLMCHR R AAL++E+AG +GT+ E   D   A+   L+KGLE L  E   F  +LK+K+LI
Sbjct:  100 VINWAEAMEQVGDDEEFLHELLGDLFNETQAHVESLKASVPSRDTETVRQKAHSIKGAAANLMCHRLREAALFLEKAGMSGTKGELTGD---ALNQTLDKGLEALLTEFDSFGKVLKEKELI 218
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BLAST of mRNA_P-littoralis_Contig66.151.1 vs. uniprot
Match: A0A835Z3I2_9STRA (Hpt domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3I2_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 1.030e-21
Identity = 52/127 (40.94%), Postives = 75/127 (59.06%), Query Frame = 2 
Query:  182 PDGTEVIDWAAAVDQCSGDVSFLEELLVDLWNESNAHFQQLKTFVPCGAMLDTQHEAHSIKGAAANLMCHRFRLAALYMERAGQAGTRLEEGSDEFTAVKGYLEKGLEVLEEELRLFEGMLKKKKLI 562
            P    V+DW  A++QC GD  FL+ELLVDLW ES++H ++L++ VP   + +T++ AH++KGAA NLMC     A L +E+    GT        F A+K      L V++ E+  FE  L K+ LI
Sbjct:   16 PQPLVVVDWTMALEQCGGDEEFLKELLVDLWTESSSHLEELQSTVPARNITETRNIAHTMKGAAGNLMCFALHHACLTLEKTAHEGTSTIPTEQLFEAMKD----ALVVIQGEMARFEEYLHKRALI 138
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BLAST of mRNA_P-littoralis_Contig66.151.1 vs. uniprot
Match: A0A6S9GU07_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9GU07_HETAK)

HSP 1 Score: 84.0 bits (206), Expect = 1.830e-16
Identity = 53/131 (40.46%), Postives = 72/131 (54.96%), Query Frame = 2 
Query:  185 DGTEVIDWAAAVDQCSGDVSFLEELLVDLWNESNAHFQQLKTFVPCGAMLDT--------QHEAHSIKGAAANLMCHRFRLAALYMERAGQAGTRLEEGSDEFTAVKGYLEKGLEVLEEELRLFEGMLKKK 553
            D  E+I W AA++QC+GD  FL+ELL D   E+ AHFQ L+  V      DT        +  AHSIKGAAANLMC++ R AA  +E+ G  G   E   D F  +     +GL  LE E++  +  L ++
Sbjct:    9 DDDEIIGWEAALEQCAGDEEFLQELLQDFSVETAAHFQALQKAVDALTPEDTAGDEADAIRRAAHSIKGAAANLMCNKLRDAAQSLEKTGMQGVSGEIEGDSFIELAT---EGLATLESEVKALDEELAER 136
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig66.151.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FN01_ECTSI3.020e-7176.87Hpt domain protein n=2 Tax=Ectocarpus TaxID=2879 R... [more]
A0A7S2XTL1_9STRA6.630e-2550.82Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835Z3I2_9STRA1.030e-2140.94Hpt domain protein n=1 Tax=Tribonema minus TaxID=3... [more]
A0A6S9GU07_HETAK1.830e-1640.46Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig66contigP-littoralis_Contig66:516550..520090 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FN01
PFAMsHpt
Model size853
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons5
Evalue4.18e-73
EggNOG OGs2EUJB@1|root,2SWQ8@2759|Eukaryota
Cds size534
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig66.151.1prot_P-littoralis_Contig66.151.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig66 516581..519802 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791378.5574427-UTR-P-littoralis_Contig66:516549..5165801680791378.5574427-UTR-P-littoralis_Contig66:516549..516580Pylaiella littoralis U1_48UTRP-littoralis_Contig66 516550..516580 +
1680791378.642987-UTR-P-littoralis_Contig66:519802..5200901680791378.642987-UTR-P-littoralis_Contig66:519802..520090Pylaiella littoralis U1_48UTRP-littoralis_Contig66 519803..520090 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791378.5722458-CDS-P-littoralis_Contig66:516580..5166791680791378.5722458-CDS-P-littoralis_Contig66:516580..516679Pylaiella littoralis U1_48CDSP-littoralis_Contig66 516581..516679 +
1680791378.587691-CDS-P-littoralis_Contig66:517356..5174521680791378.587691-CDS-P-littoralis_Contig66:517356..517452Pylaiella littoralis U1_48CDSP-littoralis_Contig66 517357..517452 +
1680791378.6071308-CDS-P-littoralis_Contig66:517948..5180561680791378.6071308-CDS-P-littoralis_Contig66:517948..518056Pylaiella littoralis U1_48CDSP-littoralis_Contig66 517949..518056 +
1680791378.6189916-CDS-P-littoralis_Contig66:518485..5186061680791378.6189916-CDS-P-littoralis_Contig66:518485..518606Pylaiella littoralis U1_48CDSP-littoralis_Contig66 518486..518606 +
1680791378.6323552-CDS-P-littoralis_Contig66:519692..5198021680791378.6323552-CDS-P-littoralis_Contig66:519692..519802Pylaiella littoralis U1_48CDSP-littoralis_Contig66 519693..519802 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig66.151.1

>prot_P-littoralis_Contig66.151.1 ID=prot_P-littoralis_Contig66.151.1|Name=mRNA_P-littoralis_Contig66.151.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=178bp
MKNTADTNPRGEALTAKKTQPSSSVAVSPTSEKRLSELDSANLVGVQLGV
PDGTEVIDWAAAVDQCSGDVSFLEELLVDLWNESNAHFQQLKTFVPCGAM
LDTQHEAHSIKGAAANLMCHRFRLAALYMERAGQAGTRLEEGSDEFTAVK
GYLEKGLEVLEEELRLFEGMLKKKKLI*
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mRNA from alignment at P-littoralis_Contig66:516550..520090+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig66.151.1 ID=mRNA_P-littoralis_Contig66.151.1|Name=mRNA_P-littoralis_Contig66.151.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3541bp|location=Sequence derived from alignment at P-littoralis_Contig66:516550..520090+ (Pylaiella littoralis U1_48)
GGAATGTACTTCCAATGACGACGATACTGCAATGAAAAACACGGCAGACA
CAAACCCACGAGGAGAAGCTCTTACAGCGAAGAAGACTCAGCCTAGTTCT
TCTGTCGCGGTTTCCCCAACATCAGAAAAGGTGAAGCGTCCAGGACAAGG
CGGACGCCTGTTTCTCAGCGTTTTGTCTATACGGGACAAAGCTCTTTCAT
GGCAATCCTCATGCCGATTAAATGGGCGTGATGGACTCGTATGACTGCTG
TCCGCAACGATATTCTGTCGCGGTTCCCTCTAGAAGGAAGAACCTCGGCA
GCAGTTGGTCGTCATTCTTGACACAACCAGCGAATTTGAAGAGCATTGAT
ACCAGCACGTCGGATAACTAATTTACAAGCATTGCCGCTACGGACAATCC
CCATCTTCAAGTTTTGCATGCCCCACTCTTGACTGTATTTTAATTTCTGT
TGCTATTTTTTTCCAGTTCCACCGAAGGAGTATCTTTTGTCTCCTGCAAC
ATAAGTATTCTTTATGCTTGTGTCTGACAAGCGTGGTATTCCACCCTCCT
CTGCACTGCAAGTATTCTGGATTCGACTGTGAGAAAATATATGGACGGTA
ATCAATTTTCATGGCTTTGAACAAGGGTTTTTCGAAAACAAGCTGAGGCC
GGCTTCTTGCAGCGCATACACTAGTCCCTTCCATCTGTCTTCCATCACTG
AAAGAGCTGCTGCTGCTGCTGCTGCTTTCTACCGCGATGGCTTCCGGTGC
AACTCCGCACTCATTTCTGGCACACCCCCCCTCTTTCCTGGCGATGAAAT
AAACCAGCGTCTAAGCGAACTTGATTCGGCAAACCTCGTGGGTGTGCAGC
TAGGGGTACCGGATGGCACGGAGGTGATCGATTGGGCTGCTGCCGTCGAT
CAGGTGATTTCGATTTACAATAACCACGCACGTGCTCAAAAGAGTATGGA
TCGATGAACTCAAAAAGAAGCCGCGTGAAGCTGACGTGCCGGAAAGTTTT
TGGCACTATTTGTGCGAGGGTTTCTGCCTTGTCTGACTTCCCAATGACCG
TAGGCATAGCGACCAACAAATGTACGAAGAAGGTTATTTGTCACATGACA
GATAGCCCTCTGATGGTAGGACTCTCGAATCACGTTGAAGTCTTGCCCAT
GCTGTGGCTCAATAAAAAGTAATGGAAGCTTTTGGAACGAAGCTACCCGC
AAGACCCTAGCCCCATCAACATGCGCCGTCGCTATCGAGCCTAGTCAGAG
TGCATGTTTGACACAAGCGATTTGAATTACAACCCGCCCCCCATTCCCTA
AGCACGTATTCGCAACTCAAGTGGCCGTTGATCATTCTTCTCTGTCGCGT
CGCCTGTTTTTTGCATCGATTTGGTCTCTTTTTGTGTGGCGTGTGATAGT
GTTCGGGGGACGTGTCGTTCCTAGAGGAGCTGCTGGTGGATCTGTGGAAC
GAGTCTAACGCGCACTTTCAGCAGCTCAAGACATTTGTTCCATGCGGGGC
GATGCTCGTGAGGGCGTGTGTGAATGTGTCTGCTTTCACGCATGGCGTGA
ACGTTGTCGTGTCACGTCAACGAAGACGTTTGATTGTGTGTGCCCGTCGG
ATATCGCCCGCTACCTTGTTGTCTGCTTTGGGATGTTGCATTTGGAAACA
GAAACGGCTACCTGAGTCGTGGCCTGGGGAACATTTATGTTATCACGCAG
AGTATACCTTTGCTGGTGCTCCCATCTCATGAAGCGGTGTTGCAGGCAGA
CGCACGCGTGGGAGAATTCCTGAGTGTCAATGGTCACCCTGTTTTTGTCC
ATCGCCATCCTTACTGCCCCATTCCATGCATGTTTTGAGGAATTATCTCA
CCTATTGTATTTGGTTTTCCCAAGCTCAACCCCACCCGCGTGCATTCCTG
CGGACTGCTTGATCTCTACACGTCGGTGATCACCAGGACACGCAACATGA
AGCTCACTCGATCAAGGGCGCGGCCGCTAACCTGATGTGCCACCGCTTCC
GCCTAGCCGCCTTATACATGGAGAGGGCAGGCCAAGCAGGCACTAGGCTT
GAAGAAGGTGGGTCACACATGGATTCGACGGGATGTGTCAGTGTAGCTAG
TGAAATGCAGTTTTACATCGGAATGTACAAACTGCATTCCCATGGGGCAG
CCGGCTATGCAGTTCTTGTGCCAAACATGCAGGGTTCCGCGGAGAGTGTT
GACAGCGAAGGTGGGTGAGGACATGCGTGTGCCTAAGAAGCCTGTCTCAT
ATTCAACCCTTAACGAGTGGGTTAATCCCCTGCGATGCAGTCAGCCCTCG
ATATGGTGTGTCTGTCTTTGACTACCTTATTTTCTTTCTTACCGCAAAAG
TCGCTATCCGTAGCCTCCCGTTCTACGTTACGGGACGCACGTACACCGTA
GTATATCGAGAACGAATGACCTCGGCTGAATCTGAAATCCTCCAGAGAGC
GTTGATTTTCCTATGTTAAATGCGTTTACAGTAGGCGCCCGCTGACAAGA
AACGTCAAATATGGGTCGAGCCTCAATTTCTTCTTTCGCCACCACCGGTG
GCCAAAGGTCTTTGGATAGTGTTTAGTGTAGGATCGACGGCTGAGCTCTG
TTTCTTACGCCAATTTCCTTATTTTTCGGGGACAGGTGAGCTTCATTTTC
TTATGAAAATTTTTCTTACAAGCGGGCGCCTACTATATTACATCCTCAGT
TGAGGTCTACACGTAGGAGCAAGGTCGATATGCTATACGCCGGAGTAGTG
CTTTGAAACGCTGACCAACTGACACCCGAGTCTCATCTGGTCTTCAGAAA
GCTCTCATATTTCTCATTTCCTGCTCGGTTTTTCGTGTTTGGTTGCTTCT
TTGCCCATTTTTCTCCCCGTTTGGCTGTTACTTTCACTTGGTCGTATTTC
ACGCTGACGACGACTCGGGAGATTTCTCTATGTCTGCCCGCAGTTCGTCT
CTCTCTCTCTTTCCGTCTTCCTTTGGTATTGTTTAGGGTCTAAGATGCTC
ACAATTACGTGCTCCTGTCTCAGGTACGGTGGACCGCCAGTATTGGAAAC
CCAATTACACAAGTATGACCGCGGGTCCGTCCGTGAAAAATAAATCAGGG
TCCTCTGGTACTCTATTTCATTCGATGGTGCACGATTCTGCAGGTTCAGA
TGAGTTTACCGCTGTGAAAGGGTACCTGGAGAAGGGATTGGAGGTGCTCG
AAGAGGAGCTACGGCTGTTTGAAGGCATGCTTAAGAAAAAGAAGCTCATC
TGATTGAGGGCGGGGCAAATCGCTCGCTCGTGGTGGCCGTGCTCGGCGCC
GCCCCATGTCATATCCTCGTTGCGGCCCGGTCGTGGTGATCATGTTGTGT
GTGTGTCATGTAAATGCGAAGGTTCGGGAGCGTCAAGCTCGAGTTTGAAA
CCCATGGGTTTGGCATGGTGTGATTAAAGTAGTGTCCTGGTAAGATTTTA
TCTTGGTCAGAAGGATGATTGGACTTGAATCTTACCTCCTCTCTTGGAAA
CCCCGGGAATGTTGAGAATGTTATGCTAGGGTATGGACTGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig66:516550..520090+

>mRNA_P-littoralis_Contig66.151.1 ID=mRNA_P-littoralis_Contig66.151.1|Name=mRNA_P-littoralis_Contig66.151.1|organism=Pylaiella littoralis U1_48|type=CDS|length=534bp|location=Sequence derived from alignment at P-littoralis_Contig66:516550..520090+ (Pylaiella littoralis U1_48)
ATGAAAAACACGGCAGACACAAACCCACGAGGAGAAGCTCTTACAGCGAA
GAAGACTCAGCCTAGTTCTTCTGTCGCGGTTTCCCCAACATCAGAAAAGC
GTCTAAGCGAACTTGATTCGGCAAACCTCGTGGGTGTGCAGCTAGGGGTA
CCGGATGGCACGGAGGTGATCGATTGGGCTGCTGCCGTCGATCAGTGTTC
GGGGGACGTGTCGTTCCTAGAGGAGCTGCTGGTGGATCTGTGGAACGAGT
CTAACGCGCACTTTCAGCAGCTCAAGACATTTGTTCCATGCGGGGCGATG
CTCGACACGCAACATGAAGCTCACTCGATCAAGGGCGCGGCCGCTAACCT
GATGTGCCACCGCTTCCGCCTAGCCGCCTTATACATGGAGAGGGCAGGCC
AAGCAGGCACTAGGCTTGAAGAAGGTTCAGATGAGTTTACCGCTGTGAAA
GGGTACCTGGAGAAGGGATTGGAGGTGCTCGAAGAGGAGCTACGGCTGTT
TGAAGGCATGCTTAAGAAAAAGAAGCTCATCTGA
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