mRNA_P-littoralis_Contig66.138.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig66.138.1
Unique NamemRNA_P-littoralis_Contig66.138.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig66.138.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig66contigP-littoralis_Contig66:445824..446462 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size639
Hectar predicted targeting categoryother localisation
Exons1
Cds size456
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791373.905814-UTR-P-littoralis_Contig66:445823..4459661680791373.905814-UTR-P-littoralis_Contig66:445823..445966Pylaiella littoralis U1_48UTRP-littoralis_Contig66 445824..445966 +
1680791373.9344258-UTR-P-littoralis_Contig66:446422..4464621680791373.9344258-UTR-P-littoralis_Contig66:446422..446462Pylaiella littoralis U1_48UTRP-littoralis_Contig66 446423..446462 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791373.920696-CDS-P-littoralis_Contig66:445966..4464221680791373.920696-CDS-P-littoralis_Contig66:445966..446422Pylaiella littoralis U1_48CDSP-littoralis_Contig66 445967..446422 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig66.138.1prot_P-littoralis_Contig66.138.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig66 445967..446422 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig66.138.1

>prot_P-littoralis_Contig66.138.1 ID=prot_P-littoralis_Contig66.138.1|Name=mRNA_P-littoralis_Contig66.138.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=152bp
MNLSNLPHLLEIEDLWKEMWSRESNKPLLSGSCEVGTCFIRDNTLGMATS
RADGSPPNWCGCRGLRKKSYIKDGNVVSLSNIPAPPGRRLCPSLSLKSYW
ACHTCSPLITSSEEVKRVLSCNIWSTRPVSARVGFILFPPYRAKASTPAH
P*
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mRNA from alignment at P-littoralis_Contig66:445824..446462+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig66.138.1 ID=mRNA_P-littoralis_Contig66.138.1|Name=mRNA_P-littoralis_Contig66.138.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=639bp|location=Sequence derived from alignment at P-littoralis_Contig66:445824..446462+ (Pylaiella littoralis U1_48)
TAGCGAACAGCCACTTGCGAAAATCACTACGGTGTGGTCACGCAACTTGT
TTGTACTTCTATACAGCGCACATTACAGACGGTGCCATTGGCATGAGCGG
CTGCCTGGGCTTTTGCTGTTGAGTTAAAATACACATAGCTGGGATGAACC
TTTCAAACCTTCCTCATCTGCTGGAGATTGAGGATCTGTGGAAAGAGATG
TGGTCTCGCGAGAGTAATAAACCCCTATTATCGGGCTCCTGTGAAGTTGG
AACTTGCTTCATTCGTGACAATACTTTGGGAATGGCCACGTCTCGCGCTG
ACGGAAGCCCTCCAAATTGGTGCGGCTGTAGAGGGCTTCGCAAGAAATCC
TACATCAAGGATGGCAATGTTGTAAGTTTGTCGAATATACCAGCTCCACC
CGGGCGTCGGCTTTGTCCCTCCTTGAGTCTGAAGTCCTACTGGGCATGTC
ATACCTGTAGTCCTTTGATCACGTCATCGGAAGAGGTAAAGAGAGTTTTA
AGTTGTAATATTTGGTCGACACGACCAGTGAGTGCTCGGGTAGGGTTCAT
TCTCTTTCCTCCGTACCGGGCAAAGGCATCAACACCCGCCCACCCTTGAC
AAACCCGCACAGACGCCGGTCCCGGTCGCGGCACATCCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig66:445824..446462+

>mRNA_P-littoralis_Contig66.138.1 ID=mRNA_P-littoralis_Contig66.138.1|Name=mRNA_P-littoralis_Contig66.138.1|organism=Pylaiella littoralis U1_48|type=CDS|length=456bp|location=Sequence derived from alignment at P-littoralis_Contig66:445824..446462+ (Pylaiella littoralis U1_48)
ATGAACCTTTCAAACCTTCCTCATCTGCTGGAGATTGAGGATCTGTGGAA
AGAGATGTGGTCTCGCGAGAGTAATAAACCCCTATTATCGGGCTCCTGTG
AAGTTGGAACTTGCTTCATTCGTGACAATACTTTGGGAATGGCCACGTCT
CGCGCTGACGGAAGCCCTCCAAATTGGTGCGGCTGTAGAGGGCTTCGCAA
GAAATCCTACATCAAGGATGGCAATGTTGTAAGTTTGTCGAATATACCAG
CTCCACCCGGGCGTCGGCTTTGTCCCTCCTTGAGTCTGAAGTCCTACTGG
GCATGTCATACCTGTAGTCCTTTGATCACGTCATCGGAAGAGGTAAAGAG
AGTTTTAAGTTGTAATATTTGGTCGACACGACCAGTGAGTGCTCGGGTAG
GGTTCATTCTCTTTCCTCCGTACCGGGCAAAGGCATCAACACCCGCCCAC
CCTTGA
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