mRNA_P-littoralis_Contig66.105.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig66.105.1
Unique NamemRNA_P-littoralis_Contig66.105.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig66.105.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig66contigP-littoralis_Contig66:328935..329509 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size575
Hectar predicted targeting categoryother localisation
Exons1
Cds size396
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791373.854799-UTR-P-littoralis_Contig66:328934..3291131680791373.854799-UTR-P-littoralis_Contig66:328934..329113Pylaiella littoralis U1_48UTRP-littoralis_Contig66 328935..329113 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791373.8654122-CDS-P-littoralis_Contig66:329113..3295091680791373.8654122-CDS-P-littoralis_Contig66:329113..329509Pylaiella littoralis U1_48CDSP-littoralis_Contig66 329114..329509 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig66.105.1prot_P-littoralis_Contig66.105.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig66 329114..329509 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig66.105.1

>prot_P-littoralis_Contig66.105.1 ID=prot_P-littoralis_Contig66.105.1|Name=mRNA_P-littoralis_Contig66.105.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=132bp
GGSNLAIKNVFLVAFGPKTEFWNCAQSKTCKGYWPSRLPGKPAQVASNPF
VNRGYTRGERWHGANAPAVSHFGVISDCCRHLDKVLTDSCRRVSGCPLLL
STHGTSLRYHLVGCGNVKQDSCSWRACSVRS*
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mRNA from alignment at P-littoralis_Contig66:328935..329509-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig66.105.1 ID=mRNA_P-littoralis_Contig66.105.1|Name=mRNA_P-littoralis_Contig66.105.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=575bp|location=Sequence derived from alignment at P-littoralis_Contig66:328935..329509- (Pylaiella littoralis U1_48)
GGGGGTTCAAATCTTGCCATAAAAAACGTCTTTTTAGTAGCGTTTGGGCC
GAAGACTGAATTTTGGAACTGTGCCCAATCAAAAACCTGTAAAGGTTATT
GGCCTAGCAGGTTGCCCGGTAAGCCAGCTCAAGTCGCGTCAAATCCGTTT
GTTAACCGGGGGTACACACGCGGAGAACGGTGGCATGGAGCGAATGCACC
CGCAGTCTCCCATTTTGGCGTAATTTCTGACTGCTGCAGGCACTTAGATA
AAGTTCTCACGGATTCCTGCAGAAGGGTTTCTGGCTGCCCGCTGCTGCTG
TCAACGCATGGGACGTCTCTCAGATATCATTTAGTAGGCTGTGGAAATGT
GAAGCAGGATAGTTGCTCGTGGCGAGCTTGCTCTGTCCGTAGCTGAAGCA
CAGTTTCTGCGGTTTTTGCGCAAAAATCTATGCGACAAGATGTTGCTCAA
AACGTGTGAAGTTTGAGCACCTCGATCTCGCGCCTCAAGGCATGCACAGA
GGTTTGGCACAGGTCTAATCCACACAGGAGTTGAAGCTGCCGTGATATCT
CGGAAAACATACAGAGGTTTGTGCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig66:328935..329509-

>mRNA_P-littoralis_Contig66.105.1 ID=mRNA_P-littoralis_Contig66.105.1|Name=mRNA_P-littoralis_Contig66.105.1|organism=Pylaiella littoralis U1_48|type=CDS|length=396bp|location=Sequence derived from alignment at P-littoralis_Contig66:328935..329509- (Pylaiella littoralis U1_48)
GGGGGTTCAAATCTTGCCATAAAAAACGTCTTTTTAGTAGCGTTTGGGCC
GAAGACTGAATTTTGGAACTGTGCCCAATCAAAAACCTGTAAAGGTTATT
GGCCTAGCAGGTTGCCCGGTAAGCCAGCTCAAGTCGCGTCAAATCCGTTT
GTTAACCGGGGGTACACACGCGGAGAACGGTGGCATGGAGCGAATGCACC
CGCAGTCTCCCATTTTGGCGTAATTTCTGACTGCTGCAGGCACTTAGATA
AAGTTCTCACGGATTCCTGCAGAAGGGTTTCTGGCTGCCCGCTGCTGCTG
TCAACGCATGGGACGTCTCTCAGATATCATTTAGTAGGCTGTGGAAATGT
GAAGCAGGATAGTTGCTCGTGGCGAGCTTGCTCTGTCCGTAGCTGA
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