mRNA_P-littoralis_Contig66.100.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig66.100.1
Unique NamemRNA_P-littoralis_Contig66.100.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig66.100.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig66contigP-littoralis_Contig66:325068..325887 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size487
Hectar predicted targeting categorymitochondrion
Exons2
Cds size258
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791373.4323738-UTR-P-littoralis_Contig66:325067..3251401680791373.4323738-UTR-P-littoralis_Contig66:325067..325140Pylaiella littoralis U1_48UTRP-littoralis_Contig66 325068..325140 -
1680791373.4745462-UTR-P-littoralis_Contig66:325731..3258871680791373.4745462-UTR-P-littoralis_Contig66:325731..325887Pylaiella littoralis U1_48UTRP-littoralis_Contig66 325732..325887 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791373.4453344-CDS-P-littoralis_Contig66:325140..3253441680791373.4453344-CDS-P-littoralis_Contig66:325140..325344Pylaiella littoralis U1_48CDSP-littoralis_Contig66 325141..325344 -
1680791373.4583528-CDS-P-littoralis_Contig66:325677..3257311680791373.4583528-CDS-P-littoralis_Contig66:325677..325731Pylaiella littoralis U1_48CDSP-littoralis_Contig66 325678..325731 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig66.100.1prot_P-littoralis_Contig66.100.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig66 325141..325731 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig66.100.1

>prot_P-littoralis_Contig66.100.1 ID=prot_P-littoralis_Contig66.100.1|Name=mRNA_P-littoralis_Contig66.100.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=86bp
MTRSLSTNARLFWVFKTFSFGCCVLREFNIMAATRRCIRNVPRSSQSSTK
EGSIAKDTSVVCRNDLDPRHALLLTATASRSILCW*
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mRNA from alignment at P-littoralis_Contig66:325068..325887-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig66.100.1 ID=mRNA_P-littoralis_Contig66.100.1|Name=mRNA_P-littoralis_Contig66.100.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=820bp|location=Sequence derived from alignment at P-littoralis_Contig66:325068..325887- (Pylaiella littoralis U1_48)
GGTAGATATGGAGCGTGCAGCAGTCATGGGTTAGGAGCTCGAGATGTGGG
GGAAAATGTTTATACCGGCCAAAAATACTACCGCGGAGTCCGAGGGGACG
ATAGTAATCATCCCCCACAGTCCTGCCTTAAGGCCACTCGCAGGCATGGG
GTGCAAATGACTCGCAGCCTTTCGACAAACGCCCGATTATTCTGGGTTTT
CAAAACCTTTCTTCGGTACGAATCTACGACCGCGAATGCTCCTGGAGGCC
GTCGCTGCAAGCAATAACTTGTGTCTTGGATCGAAGTCCTTGCGACACAG
AACAGACGTCGTTTGCGATTTTTGGAACGTACCCTCTTTCATCGAGTTCT
GTAAGCTACATACGGGGCGTGGTTCAGATGCTGCTGTAGCATCCATATCT
TGAACGCTTCTGGCACACAGCACCCGAAAATTCGGGACATGTATGAGTGC
CTACGACCTTAAAATCAATTACAGCGATGGGTAAGGCATGTTTGGAGAGC
AATGCGCTGAATTAGCAGTCGCAGGTACTCTCGTATGCCTTGCTCTTTCG
GGTGCTGTGTGCTGCGAGAGTTCAATATTATGGCCGCTACTCGTAGATGC
ATCCGAAACGTGCCTCGTAGCTCACAGAGCTCGACGAAAGAGGGCTCAAT
CGCAAAGGACACATCTGTAGTGTGTCGCAATGACTTGGATCCAAGACACG
CGTTATTGCTCACAGCGACTGCCTCCAGGAGCATTTTGTGCTGGTAGATT
CGTACTGAAGATAAGACCTTGGAAGTCCAACTTACTCGGGCATTTGTCTA
AAGGATGCAAGTTATTTGCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig66:325068..325887-

>mRNA_P-littoralis_Contig66.100.1 ID=mRNA_P-littoralis_Contig66.100.1|Name=mRNA_P-littoralis_Contig66.100.1|organism=Pylaiella littoralis U1_48|type=CDS|length=258bp|location=Sequence derived from alignment at P-littoralis_Contig66:325068..325887- (Pylaiella littoralis U1_48)
ATGACTCGCAGCCTTTCGACAAACGCCCGATTATTCTGGGTTTTCAAAAC
CTTTTCTTTCGGGTGCTGTGTGCTGCGAGAGTTCAATATTATGGCCGCTA
CTCGTAGATGCATCCGAAACGTGCCTCGTAGCTCACAGAGCTCGACGAAA
GAGGGCTCAATCGCAAAGGACACATCTGTAGTGTGTCGCAATGACTTGGA
TCCAAGACACGCGTTATTGCTCACAGCGACTGCCTCCAGGAGCATTTTGT
GCTGGTAG
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