mRNA_P-littoralis_Contig659.6.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig659.6.1
Unique NamemRNA_P-littoralis_Contig659.6.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig659.6.1 vs. uniprot
Match: A0A6H5L610_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L610_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 1.690e-37
Identity = 66/72 (91.67%), Postives = 69/72 (95.83%), Query Frame = 1 
Query:    1 EDNVGAIHLASNPATTPNSKHTDIRHHFIRERVARGEFRVVHVRSDLQRADFLTKPLPKEAFFSHRNFVMNI 216
            EDNVGAIHLASNPATTPNSKH DIRHHFIRERVARGEF+VVHVRSDLQRADFLTKPLPKE F +HR+FVMNI
Sbjct:   59 EDNVGAIHLASNPATTPNSKHIDIRHHFIRERVARGEFKVVHVRSDLQRADFLTKPLPKETFCAHRDFVMNI 130
[Close]
BLAST of mRNA_P-littoralis_Contig659.6.1 vs. uniprot
Match: A0A6H5KZC8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZC8_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 6.680e-37
Identity = 66/72 (91.67%), Postives = 69/72 (95.83%), Query Frame = 1 
Query:    1 EDNVGAIHLASNPATTPNSKHTDIRHHFIRERVARGEFRVVHVRSDLQRADFLTKPLPKEAFFSHRNFVMNI 216
            EDNVGAIHLASNPATTPNSKH DIRHHFIRERVARGEF+VVHVRSDLQRADFLTKPLPKE F +HR+FVMNI
Sbjct:  105 EDNVGAIHLASNPATTPNSKHIDIRHHFIRERVARGEFKVVHVRSDLQRADFLTKPLPKETFCAHRDFVMNI 176
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BLAST of mRNA_P-littoralis_Contig659.6.1 vs. uniprot
Match: A0A6H5KHN8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHN8_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 1.680e-34
Identity = 66/72 (91.67%), Postives = 69/72 (95.83%), Query Frame = 1 
Query:    1 EDNVGAIHLASNPATTPNSKHTDIRHHFIRERVARGEFRVVHVRSDLQRADFLTKPLPKEAFFSHRNFVMNI 216
            EDNVGAIHLASNPATTPNSKH DIRHHFIRERVARGEF+VVHVRSDLQRADFLTKPLPKE F +HR+FVMNI
Sbjct:  343 EDNVGAIHLASNPATTPNSKHIDIRHHFIRERVARGEFKVVHVRSDLQRADFLTKPLPKETFCAHRDFVMNI 414
[Close]
BLAST of mRNA_P-littoralis_Contig659.6.1 vs. uniprot
Match: A0A6H5K5L3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5L3_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 1.080e-33
Identity = 66/72 (91.67%), Postives = 69/72 (95.83%), Query Frame = 1 
Query:    1 EDNVGAIHLASNPATTPNSKHTDIRHHFIRERVARGEFRVVHVRSDLQRADFLTKPLPKEAFFSHRNFVMNI 216
            EDNVGAIHLASNPATTPNSKH DIRHHFIRERVARGEF+VVHVRSDLQRADFLTKPLPKE F +HR+FVMNI
Sbjct:  491 EDNVGAIHLASNPATTPNSKHIDIRHHFIRERVARGEFKVVHVRSDLQRADFLTKPLPKETFCAHRDFVMNI 562
[Close]
BLAST of mRNA_P-littoralis_Contig659.6.1 vs. uniprot
Match: A0A6H5JWG1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWG1_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 1.210e-33
Identity = 66/72 (91.67%), Postives = 69/72 (95.83%), Query Frame = 1 
Query:    1 EDNVGAIHLASNPATTPNSKHTDIRHHFIRERVARGEFRVVHVRSDLQRADFLTKPLPKEAFFSHRNFVMNI 216
            EDNVGAIHLASNPATTPNSKH DIRHHFIRERVARGEF+VVHVRSDLQRADFLTKPLPKE F +HR+FVMNI
Sbjct:  504 EDNVGAIHLASNPATTPNSKHIDIRHHFIRERVARGEFKVVHVRSDLQRADFLTKPLPKETFCAHRDFVMNI 575
[Close]
BLAST of mRNA_P-littoralis_Contig659.6.1 vs. uniprot
Match: A0A6H5KGK7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGK7_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 2.950e-33
Identity = 66/72 (91.67%), Postives = 69/72 (95.83%), Query Frame = 1 
Query:    1 EDNVGAIHLASNPATTPNSKHTDIRHHFIRERVARGEFRVVHVRSDLQRADFLTKPLPKEAFFSHRNFVMNI 216
            EDNVGAIHLASNPATTPNSKH DIRHHFIRERVARGEF+VVHVRSDLQRADFLTKPLPKE F +HR+FVMNI
Sbjct:  728 EDNVGAIHLASNPATTPNSKHIDIRHHFIRERVARGEFKVVHVRSDLQRADFLTKPLPKETFCAHRDFVMNI 799
[Close]
BLAST of mRNA_P-littoralis_Contig659.6.1 vs. uniprot
Match: A0A6H5KAC2_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAC2_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 3.570e-33
Identity = 66/72 (91.67%), Postives = 69/72 (95.83%), Query Frame = 1 
Query:    1 EDNVGAIHLASNPATTPNSKHTDIRHHFIRERVARGEFRVVHVRSDLQRADFLTKPLPKEAFFSHRNFVMNI 216
            EDNVGAIHLASNPATTPNSKH DIRHHFIRERVARGEF+VVHVRSDLQRADFLTKPLPKE F +HR+FVMNI
Sbjct: 1804 EDNVGAIHLASNPATTPNSKHIDIRHHFIRERVARGEFKVVHVRSDLQRADFLTKPLPKETFCAHRDFVMNI 1875
[Close]
BLAST of mRNA_P-littoralis_Contig659.6.1 vs. uniprot
Match: A0A6H5K862_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K862_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 3.630e-33
Identity = 66/72 (91.67%), Postives = 69/72 (95.83%), Query Frame = 1 
Query:    1 EDNVGAIHLASNPATTPNSKHTDIRHHFIRERVARGEFRVVHVRSDLQRADFLTKPLPKEAFFSHRNFVMNI 216
            EDNVGAIHLASNPATTPNSKH DIRHHFIRERVARGEF+VVHVRSDLQRADFLTKPLPKE F +HR+FVMNI
Sbjct: 2221 EDNVGAIHLASNPATTPNSKHIDIRHHFIRERVARGEFKVVHVRSDLQRADFLTKPLPKETFCAHRDFVMNI 2292
[Close]
BLAST of mRNA_P-littoralis_Contig659.6.1 vs. uniprot
Match: A0A6H5JMP2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMP2_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 3.340e-31
Identity = 64/72 (88.89%), Postives = 67/72 (93.06%), Query Frame = 1 
Query:    1 EDNVGAIHLASNPATTPNSKHTDIRHHFIRERVARGEFRVVHVRSDLQRADFLTKPLPKEAFFSHRNFVMNI 216
            EDNVGAIHLASNPATTPNSK  DIRHHFIRERVARG F+VVHVRSDLQRADFLTKPLPKE F +HR+FVMNI
Sbjct: 1032 EDNVGAIHLASNPATTPNSKQIDIRHHFIRERVARGGFKVVHVRSDLQRADFLTKPLPKETFCAHRDFVMNI 1103
[Close]
BLAST of mRNA_P-littoralis_Contig659.6.1 vs. uniprot
Match: A0A6H5L3I3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3I3_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 3.400e-31
Identity = 60/69 (86.96%), Postives = 64/69 (92.75%), Query Frame = 1 
Query:   10 VGAIHLASNPATTPNSKHTDIRHHFIRERVARGEFRVVHVRSDLQRADFLTKPLPKEAFFSHRNFVMNI 216
             GAIHLASNPATTPNSKH DIRHHFIRER+ARGEF+VVHVRSDLQRADFLTKPLPKE F + R+FVMNI
Sbjct:  203 AGAIHLASNPATTPNSKHIDIRHHFIRERLARGEFKVVHVRSDLQRADFLTKPLPKETFCAQRDFVMNI 271
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig659.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L610_9PHAE1.690e-3791.67Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZC8_9PHAE6.680e-3791.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHN8_9PHAE1.680e-3491.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5L3_9PHAE1.080e-3391.67Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JWG1_9PHAE1.210e-3391.67Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KGK7_9PHAE2.950e-3391.67Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KAC2_9PHAE3.570e-3391.67Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5K862_9PHAE3.630e-3391.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMP2_9PHAE3.340e-3188.89Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L3I3_9PHAE3.400e-3186.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig659contigP-littoralis_Contig659:46209..46927 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog5217.XP_007000815.1
PFAMsRVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size721
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.8e-12
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3NUZ7@4751|Fungi,3UY7N@5204|Basidiomycota
DescriptionEncoded by
Cds size222
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791372.1483722-UTR-P-littoralis_Contig659:46208..467051680791372.1483722-UTR-P-littoralis_Contig659:46208..46705Pylaiella littoralis U1_48UTRP-littoralis_Contig659 46209..46705 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791372.1666331-CDS-P-littoralis_Contig659:46705..469271680791372.1666331-CDS-P-littoralis_Contig659:46705..46927Pylaiella littoralis U1_48CDSP-littoralis_Contig659 46706..46927 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig659.6.1prot_P-littoralis_Contig659.6.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig659 46706..46927 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig659.6.1

>prot_P-littoralis_Contig659.6.1 ID=prot_P-littoralis_Contig659.6.1|Name=mRNA_P-littoralis_Contig659.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=74bp
EDNVGAIHLASNPATTPNSKHTDIRHHFIRERVARGEFRVVHVRSDLQRA
DFLTKPLPKEAFFSHRNFVMNIW*
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mRNA from alignment at P-littoralis_Contig659:46209..46927-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig659.6.1 ID=mRNA_P-littoralis_Contig659.6.1|Name=mRNA_P-littoralis_Contig659.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=719bp|location=Sequence derived from alignment at P-littoralis_Contig659:46209..46927- (Pylaiella littoralis U1_48)
GAGGATAACGTTGGTGCTATTCACCTGGCCAGCAACCCAGCCACTACCCC
GAACTCGAAGCACACTGACATCCGTCACCATTTTATTCGCGAGCGTGTTG
CGCGGGGGGAGTTTCGGGTAGTTCATGTACGGTCTGACCTCCAGCGCGCG
GATTTTCTGACCAAACCACTGCCAAAGGAGGCTTTCTTCTCACACCGTAA
TTTCGTGATGAACATTTGGTGATTTTTCTTCCTTTGGTTTGTCTGATTGT
TTGATTTTTTTTTTTTTTTGCAGTATCTTGATACCATATTGGGTATCGTG
CGTCCTCTTTCTCCTTGTGGTTTATGGTTTTCTCCAGGTGGCTCGTTTTT
GCTACTCATCTCCATATGTTTTCCTTTTGTGTGTTCCGGTATCGCCGTTG
GGTTTCCTGCTGTAGAAAATCATAAGGGGGAATGTGATGTTATGATTGTC
GTCGCAGTCAACAGTTAGTGGTGTTTCTGACAGCGCGGGTTTATTTTCGT
TTCATATGTTTGGTTTCTTTTCCGCATTTTTCCTGCGGAAGAATCGTGGG
GGTATTTCTTGTGTCATGGTTTTTGGTGTTTGATGCTTTGTTGTTTTTTT
CTTGTTTTACCTGCAGGAAGAACAGGGAAATTATCTTTGTATGTCCTGGT
TTGAACTTGCAGAACCTCTCTGTGAGGAGATGCTTACAGGCATGGTGGTT
GAGGGTATTATATTTTGTA
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Coding sequence (CDS) from alignment at P-littoralis_Contig659:46209..46927-

>mRNA_P-littoralis_Contig659.6.1 ID=mRNA_P-littoralis_Contig659.6.1|Name=mRNA_P-littoralis_Contig659.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=222bp|location=Sequence derived from alignment at P-littoralis_Contig659:46209..46927- (Pylaiella littoralis U1_48)
GAGGATAACGTTGGTGCTATTCACCTGGCCAGCAACCCAGCCACTACCCC
GAACTCGAAGCACACTGACATCCGTCACCATTTTATTCGCGAGCGTGTTG
CGCGGGGGGAGTTTCGGGTAGTTCATGTACGGTCTGACCTCCAGCGCGCG
GATTTTCTGACCAAACCACTGCCAAAGGAGGCTTTCTTCTCACACCGTAA
TTTCGTGATGAACATTTGGTGA
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