mRNA_P-littoralis_Contig659.19.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig659.19.1
Unique NamemRNA_P-littoralis_Contig659.19.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig659.19.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig659contigP-littoralis_Contig659:148968..150783 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size743
Hectar predicted targeting categoryother localisation
Exons2
Cds size462
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791372.013701-UTR-P-littoralis_Contig659:148967..1492471680791372.013701-UTR-P-littoralis_Contig659:148967..149247Pylaiella littoralis U1_48UTRP-littoralis_Contig659 148968..149247 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791372.0311217-CDS-P-littoralis_Contig659:149247..1494941680791372.0311217-CDS-P-littoralis_Contig659:149247..149494Pylaiella littoralis U1_48CDSP-littoralis_Contig659 149248..149494 +
1680791372.043692-CDS-P-littoralis_Contig659:150568..1507831680791372.043692-CDS-P-littoralis_Contig659:150568..150783Pylaiella littoralis U1_48CDSP-littoralis_Contig659 150569..150783 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig659.19.1prot_P-littoralis_Contig659.19.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig659 149248..150783 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig659.19.1

>prot_P-littoralis_Contig659.19.1 ID=prot_P-littoralis_Contig659.19.1|Name=mRNA_P-littoralis_Contig659.19.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=154bp
MAGMVGMSSSFVCSAGAGSGAGSSAASATSGTTATAAATAAAAVSVESGT
TASTAAAASAASAAVLALLLYSCAADPTRVLTGSSSRPLRHAAAGRGLTA
ASWQRLTQGGVGGDAGGAVNEECATHIQPPHPSSLLTTHAHTHVWWNLFV
VHVC
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mRNA from alignment at P-littoralis_Contig659:148968..150783+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig659.19.1 ID=mRNA_P-littoralis_Contig659.19.1|Name=mRNA_P-littoralis_Contig659.19.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1816bp|location=Sequence derived from alignment at P-littoralis_Contig659:148968..150783+ (Pylaiella littoralis U1_48)
GGACGATCCATTCTGAAGCCTAGATGACATTTTTTTCAGCAACATTTTCT
CATGCAAACGCGGCGCAATACCGCTTTGGAGCGCCTGCTCGCTTTTGGAT
GGGGGTAGGACCCTATTAAACAAGACTTTCTTGGGTAGGTCCACACCCCC
ACGGAAACCCCACAGTCCCGCCATTCTCTGTCAGCGCGGGAGCGTGGCAC
AACTCGCCACTCGCCGCCTGTTCTTCTGTCGGGAAGAGCACCTACATCTC
GGCACCCACGGCCCAAGGTGTGAGTGCACGATGGCAGGAATGGTGGGGAT
GTCGTCCTCGTTCGTTTGCAGTGCTGGTGCTGGTAGTGGTGCAGGTTCTT
CTGCTGCCTCCGCCACATCTGGCACTACTGCTACTGCTGCTGCTACGGCT
GCTGCTGCTGTTTCTGTTGAATCTGGTACTACTGCGTCAACGGCTGCTGC
TGCTTCTGCTGCTTCTGCTGCTGTGCTCGCACTGCTGCTGTACTCCTGTG
CTGCTGATCCGACGAGGGTCTTGACGGGTGAGTTGACAGTCGGCTGGATG
CTGGATGTTGTTGTTTCCACTGCTGTGATATCACTGTTGATGTTGCTGAT
GCTGATGCTGTGTTCTTACGTTCGTTTGATCGAGTAAAACTCACCCCGTA
CGTCTTCCTCCTTCACATGCTGCACAGGTGTTCACGAGTGAGTTAGCATT
CGACTGGTTGTTGTTTCCACGTTGGTTGCATTGCTGTTGCTGTTGCCGCT
GTGCTGGTGCTGTAGTGTTTGATGTTGAGTAAAACTGGCCCCATACTTCT
GCCTTTGCATTCAGCCAGCTCGAGAAGAAGCTGGAGTCGCAGTCACACTG
GGTAGGCCCGAAACGGTCGGATAGGGAGCCGGTAAACATGTTCAATTTAT
TAACGTGACATCACTTATGTCAGGCGGGGCATCATCAAGTCGTACCTTAT
GTTGAGGAGGACGTGGTCTGAGATGAGGGCGAAGGAGATGTGGGGTGCAA
GGTGCAGTTTGCCCGTGTATGGGTGTTGTGTGGTGAGGTGTGGGCGCTGG
GCCGTGTGATGTGGTGTGGGCTCTGGGCCGTGGCACTGGGCCGTATACTT
GAGAAAGGCTCTGGGCCTGGAGTCTGGAGGCCCTGGGCCTGTAGTTTGGG
AAGGCGCTGGGCCGAACTTGATAGATTGATCAGAAGCACAGAGGCGACAC
GGTCGCTCGGGTGGCGCACTCAAAGCTCCAAGAAGGAGCGATCTACGACA
TCATACGAAACACGTAACCCACCGCATCGATCCACGATGTTCCCGAACAA
TGATCTCCGTAGAACTGCAACCAATAAACAAACGATCGCATGCTGCTGCG
AGTACATCCAACACATCACATGGCTAGCGGGATCGCTCTGAACGGAACCC
CGTTGCAGTTCCCTGTGAAAATGTGTCTCTTATCTGCAACCTCCAACGCC
GGTTTGGGCCCCGCAATCTTGCACTGTGCCCTTTACGTTGCGGGTGCGAG
GCACTGTTTTTCGAAGATGACGTGATTACTTTTCCTTACTACTCGTCCCC
TATGATATTCTCCGTCGTCATGCCCTCCTTCCTTCGAACCCACTTTTTCA
GGATCATCCTCCCGGCCGCTGCGCCATGCAGCTGCAGGAAGGGGACTCAC
TGCAGCGTCATGGCAGCGCCTTACCCAAGGCGGCGTTGGGGGGGATGCAG
GGGGTGCAGTGAATGAAGAGTGCGCAACACACATCCAGCCTCCGCACCCG
TCCTCGCTTTTAACAACACACGCACACACACACGTGTGGTGGAATTTATT
TGTGGTGCATGTGTGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig659:148968..150783+

>mRNA_P-littoralis_Contig659.19.1 ID=mRNA_P-littoralis_Contig659.19.1|Name=mRNA_P-littoralis_Contig659.19.1|organism=Pylaiella littoralis U1_48|type=CDS|length=462bp|location=Sequence derived from alignment at P-littoralis_Contig659:148968..150783+ (Pylaiella littoralis U1_48)
ATGGCAGGAATGGTGGGGATGTCGTCCTCGTTCGTTTGCAGTGCTGGTGC
TGGTAGTGGTGCAGGTTCTTCTGCTGCCTCCGCCACATCTGGCACTACTG
CTACTGCTGCTGCTACGGCTGCTGCTGCTGTTTCTGTTGAATCTGGTACT
ACTGCGTCAACGGCTGCTGCTGCTTCTGCTGCTTCTGCTGCTGTGCTCGC
ACTGCTGCTGTACTCCTGTGCTGCTGATCCGACGAGGGTCTTGACGGGAT
CATCCTCCCGGCCGCTGCGCCATGCAGCTGCAGGAAGGGGACTCACTGCA
GCGTCATGGCAGCGCCTTACCCAAGGCGGCGTTGGGGGGGATGCAGGGGG
TGCAGTGAATGAAGAGTGCGCAACACACATCCAGCCTCCGCACCCGTCCT
CGCTTTTAACAACACACGCACACACACACGTGTGGTGGAATTTATTTGTG
GTGCATGTGTGC
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