mRNA_P-littoralis_Contig659.17.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig659.17.1
Unique NamemRNA_P-littoralis_Contig659.17.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig659.17.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig659contigP-littoralis_Contig659:138389..140676 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size747
Hectar predicted targeting categoryother localisation
Exons3
Cds size744
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791371.9523003-CDS-P-littoralis_Contig659:138389..1384891680791371.9523003-CDS-P-littoralis_Contig659:138389..138489Pylaiella littoralis U1_48CDSP-littoralis_Contig659 138390..138489 -
1680791371.9636056-CDS-P-littoralis_Contig659:139417..1395541680791371.9636056-CDS-P-littoralis_Contig659:139417..139554Pylaiella littoralis U1_48CDSP-littoralis_Contig659 139418..139554 -
1680791371.977279-CDS-P-littoralis_Contig659:140169..1406761680791371.977279-CDS-P-littoralis_Contig659:140169..140676Pylaiella littoralis U1_48CDSP-littoralis_Contig659 140170..140676 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig659.17.1prot_P-littoralis_Contig659.17.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig659 138390..140676 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig659.17.1

>prot_P-littoralis_Contig659.17.1 ID=prot_P-littoralis_Contig659.17.1|Name=mRNA_P-littoralis_Contig659.17.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=248bp
QRVETTDRDGNVLQQASEAVAATAAAAVGEKTHNQGASRRNVQDEEQQFQ
EGHHRPHEHDAESPLQEGSVVALDNPENGNQIGVEDRHRHSGGRINGEAG
ESRETGRDGSRRHPYSLGSNQEDETSDVVRRDTPSSSSNNRELVHSPPMI
SRRRSSGRMVEPGFDKHSTVDGAGERQDRVSGEPARKQSVHGGGDVKPLR
LASSSSAEQQSTSHEPTPNTPRRERPTRATVVAATPKSPAVLPTPRSP
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mRNA from alignment at P-littoralis_Contig659:138389..140676-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig659.17.1 ID=mRNA_P-littoralis_Contig659.17.1|Name=mRNA_P-littoralis_Contig659.17.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2288bp|location=Sequence derived from alignment at P-littoralis_Contig659:138389..140676- (Pylaiella littoralis U1_48)
CAGCGCGTGGAGACTACTGACAGGGATGGTAACGTGCTCCAACAAGCTTC
CGAAGCTGTTGCTGCTACTGCTGCTGCTGCGGTGGGCGAGAAAACCCACA
ATCAAGGAGCCAGCCGCCGAAACGTTCAAGATGAGGAACAACAGTTTCAG
GAAGGACACCACCGGCCCCACGAGCACGATGCAGAGTCACCCCTTCAAGA
AGGGAGTGTCGTTGCTCTGGACAATCCGGAAAATGGTAATCAAATCGGCG
TCGAAGATCGGCATCGACATTCGGGCGGGCGGATCAATGGCGAAGCTGGA
GAGAGTCGAGAGACGGGTAGAGATGGAAGTCGCAGACATCCATATTCCTT
AGGCAGCAACCAGGAAGACGAAACAAGCGACGTTGTGAGACGAGACACGC
CCTCGTCGTCTTCGAACAATCGGGAGCTGGTACACTCGCCGCCGATGATA
TCGCGAAGAAGATCAAGCGGTAGGATGGTGGAGCCAGGTTTCGACAAGCA
CAGTACTGTAAGTCATGTAGAAGTCATGTAGATACCGTACTAAAGCATTA
TGATACATTTTTACTTCTACTTTTCGTCGGCCAAGACCAGCGCCATTCAT
TCGCGACTAGGGTAGAAGAGGTACCGAGACTAAACGTCCTCTGAAAACTC
TCGACGGAGTGTTAGTCTTTACAACGCCATCACGTTGGGGGTCTGCTGCA
TTTACTCTGGAGGGGAACCAAATGAGCAAGTGCTATCGGAATTGAAGAGA
TATTTGAATACGATAAGGCGCTGAACGGTCTACCAAAGGGGCCCCGCGTA
TCATACTTCTCCATATCCCAGGCGCTCGAAACCAGCCGAAAAAGCACAAC
CTCAACAAGCGAAAGATGTAATAAAACCACAGCATTGACACCAACACTTT
CTACGTCGGAAACGGTCGCCAATACCCGTGCTCATGAGAGACGATCACGA
ACATGTGATCAAAGTGCAGAGATTAGGTTGAGATGGTTCGTGAGGCAGTG
CTGACAAAAAGTGTGTAAAAACTTCACCGAAGGAGGGCGCGCAATGGTGT
GCGAACTAAAACATGGCTGAGCTCCTGCCACTGCTGTCTCTCATTCCGGT
TCGGCTTTCGGTGGGAACCAAGGTCGACGGGGCAGGCGAGAGGCAGGATC
GTGTCAGTGGAGAGCCTGCTCGAAAACAGAGCGTGCACGGGGGGGGGGAC
GTAAAGCCCCTGCGCCTGGCCTCTTCAAGCAGCGCCGAACAGCAGTCAAC
TTCCCACGAGTAAGAGCCGAGATCGAAGGTTCGTTCGATCGATTCGTGCG
AGCGGTTTCAGCCTCCCATAGACTCGGACTGTTTGTGCAGCGTACGCCAA
CGACGACTCTTGCTTTTCCGCAACGATCAATCGCCCTATTTCATCAAGAG
AGCAACCACTGCGCGACGCACTAAACACTTGACTTTTCCCATTTTCTCGC
GACTCAATGATAGCTGGTCATCTCGAACGACTCACGTCACAGCCAACCAA
CCTCCGAATGAGGACCCTATTGCCTACCTAACGCTATTTGCCGAACAACA
TATTCCTTACTGTGGACCTATTCCTCGCACTCGCGCCCAGCGTTAAAGCG
GTCGTTAACCAAAGTAATTGCGCCTCTCTGCCCATCCCTAGCCACTTGCG
TCATTGTATCGGAAGACTCGTTGATACTCTGTCTCAGACTGACCGTCCCC
TCCTTCTGACGCCGAGGTCAGGTCAAACTTCACTCGAGAGGTAATGCGAC
CCCGTTTCGCTTTTCCGGCCCCTCGATGGGTCATGTTATGACAGTTCTCC
TTTCTCAAACACTCACTTCCCGCGGCAGTAGCCAACCAACAGGTCGACCA
TACCGTGGGTCACAGAATACCACATGGGTTCCCCCTATACAGATTTCCAA
AGTCCGACTACCCTCCAGCAGCAAAGAGTTTCGGTGCCGATAAGGGCGAT
GGGGTGTTGGGTCCATCTGGTCGAGAGAGCTTTCCGGAACCGTGGGCATT
GCTTGAGCTTAGCATGGCTCATAACCTGTTATTTTGATTTTGGAGTGCCG
CAATCGATCACCCGTTGAACAGTGGTCGTTCAGGGAGGGGGAGTGGGATG
TTATTGCGACCTGCAAAGTAAACGTGGCCGCGTCAAAAAATAATCGACTA
TCGTAACACTACCCGCTCGACTTTGCTCGTCGTCAAGGCCAACTCCTAAT
ACGCCGAGGAGAGAACGTCCAACTAGGGCAACAGTAGTGGCGGCGACGCC
AAAGTCTCCGGCGGTGCTACCGACGCCCCGCAGCCCAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig659:138389..140676-

>mRNA_P-littoralis_Contig659.17.1 ID=mRNA_P-littoralis_Contig659.17.1|Name=mRNA_P-littoralis_Contig659.17.1|organism=Pylaiella littoralis U1_48|type=CDS|length=744bp|location=Sequence derived from alignment at P-littoralis_Contig659:138389..140676- (Pylaiella littoralis U1_48)
CAGCGCGTGGAGACTACTGACAGGGATGGTAACGTGCTCCAACAAGCTTC
CGAAGCTGTTGCTGCTACTGCTGCTGCTGCGGTGGGCGAGAAAACCCACA
ATCAAGGAGCCAGCCGCCGAAACGTTCAAGATGAGGAACAACAGTTTCAG
GAAGGACACCACCGGCCCCACGAGCACGATGCAGAGTCACCCCTTCAAGA
AGGGAGTGTCGTTGCTCTGGACAATCCGGAAAATGGTAATCAAATCGGCG
TCGAAGATCGGCATCGACATTCGGGCGGGCGGATCAATGGCGAAGCTGGA
GAGAGTCGAGAGACGGGTAGAGATGGAAGTCGCAGACATCCATATTCCTT
AGGCAGCAACCAGGAAGACGAAACAAGCGACGTTGTGAGACGAGACACGC
CCTCGTCGTCTTCGAACAATCGGGAGCTGGTACACTCGCCGCCGATGATA
TCGCGAAGAAGATCAAGCGGTAGGATGGTGGAGCCAGGTTTCGACAAGCA
CAGTACTGTCGACGGGGCAGGCGAGAGGCAGGATCGTGTCAGTGGAGAGC
CTGCTCGAAAACAGAGCGTGCACGGGGGGGGGGACGTAAAGCCCCTGCGC
CTGGCCTCTTCAAGCAGCGCCGAACAGCAGTCAACTTCCCACGAGCCAAC
TCCTAATACGCCGAGGAGAGAACGTCCAACTAGGGCAACAGTAGTGGCGG
CGACGCCAAAGTCTCCGGCGGTGCTACCGACGCCCCGCAGCCCA
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