mRNA_P-littoralis_Contig658.36.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig658.36.1
Unique NamemRNA_P-littoralis_Contig658.36.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig658.36.1 vs. uniprot
Match: A0A6H5JJG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJG9_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 3.440e-13
Identity = 31/56 (55.36%), Postives = 39/56 (69.64%), Query Frame = 1 
Query:    1 EVSQDRLTSATFAKWAEIALMNGVPWEKLYFMVDAANQSNFATPLSASNAHGIDDK 168
            +V +DR+  A     A +A  NG PWE +Y  VDAANQSNFATP+ AS AHG+DD+
Sbjct:  374 DVERDRMYGARLENQAAVAKSNGTPWETVYLQVDAANQSNFATPIGASQAHGVDDR 429
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig658.36.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JJG9_9PHAE3.440e-1355.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig658contigP-littoralis_Contig658:163845..164015 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size173
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size171
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791371.9198256-CDS-P-littoralis_Contig658:163844..1640151680791371.9198256-CDS-P-littoralis_Contig658:163844..164015Pylaiella littoralis U1_48CDSP-littoralis_Contig658 163845..164015 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig658.36.1prot_P-littoralis_Contig658.36.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig658 163845..164015 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig658.36.1

>prot_P-littoralis_Contig658.36.1 ID=prot_P-littoralis_Contig658.36.1|Name=mRNA_P-littoralis_Contig658.36.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=57bp
EVSQDRLTSATFAKWAEIALMNGVPWEKLYFMVDAANQSNFATPLSASNA
HGIDDK*
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mRNA from alignment at P-littoralis_Contig658:163845..164015+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig658.36.1 ID=mRNA_P-littoralis_Contig658.36.1|Name=mRNA_P-littoralis_Contig658.36.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=171bp|location=Sequence derived from alignment at P-littoralis_Contig658:163845..164015+ (Pylaiella littoralis U1_48)
GAGGTTAGCCAGGATCGCCTAACCAGCGCCACGTTCGCGAAGTGGGCGGA
GATCGCACTCATGAATGGCGTCCCGTGGGAGAAGCTGTACTTCATGGTGG
ATGCCGCGAACCAGAGCAACTTCGCGACGCCGCTCTCTGCCAGTAACGCC
CATGGGATAGATGACAAGTAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig658:163845..164015+

>mRNA_P-littoralis_Contig658.36.1 ID=mRNA_P-littoralis_Contig658.36.1|Name=mRNA_P-littoralis_Contig658.36.1|organism=Pylaiella littoralis U1_48|type=CDS|length=171bp|location=Sequence derived from alignment at P-littoralis_Contig658:163845..164015+ (Pylaiella littoralis U1_48)
GAGGTTAGCCAGGATCGCCTAACCAGCGCCACGTTCGCGAAGTGGGCGGA
GATCGCACTCATGAATGGCGTCCCGTGGGAGAAGCTGTACTTCATGGTGG
ATGCCGCGAACCAGAGCAACTTCGCGACGCCGCTCTCTGCCAGTAACGCC
CATGGGATAGATGACAAGTAA
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