mRNA_P-littoralis_Contig658.34.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig658.34.2
Unique NamemRNA_P-littoralis_Contig658.34.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig658.34.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig658contigP-littoralis_Contig658:156840..157692 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size586
Hectar predicted targeting categoryother localisation
Exons2
Cds size582
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791371.818344-CDS-P-littoralis_Contig658:156841..1570461680791371.818344-CDS-P-littoralis_Contig658:156841..157046Pylaiella littoralis U1_48CDSP-littoralis_Contig658 156842..157046 -
1680791371.8346732-CDS-P-littoralis_Contig658:157315..1576921680791371.8346732-CDS-P-littoralis_Contig658:157315..157692Pylaiella littoralis U1_48CDSP-littoralis_Contig658 157316..157692 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig658.34.2prot_P-littoralis_Contig658.34.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig658 156842..157692 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig658.34.2

>prot_P-littoralis_Contig658.34.2 ID=prot_P-littoralis_Contig658.34.2|Name=mRNA_P-littoralis_Contig658.34.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=194bp
YKCTSCGTIHTGGCSETYAGDEGDEEANDRSKVRRCKDCDRTKKGEGSKK
RKAGEGEEQSGSDSEDKEGEESASTRAAGKGKGKSKKSSGKKPRRAATGA
SSVSPSKLPKIPSQSGHDGDIQIQRRAESTRVHQIRSPLSTDFPEKDLDD
VQLDKLPMLMFMCLNRADHLLQDNSAASTRLGHVIYHLCKNQLH
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mRNA from alignment at P-littoralis_Contig658:156840..157692-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig658.34.2 ID=mRNA_P-littoralis_Contig658.34.2|Name=mRNA_P-littoralis_Contig658.34.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=853bp|location=Sequence derived from alignment at P-littoralis_Contig658:156840..157692- (Pylaiella littoralis U1_48)
TACAAGTGCACGAGCTGCGGCACCATCCACACAGGCGGATGCTCCGAAAC
TTACGCCGGAGACGAAGGCGACGAAGAAGCAAACGACCGCAGCAAAGTTC
GACGGTGCAAGGACTGCGACAGGACGAAAAAGGGAGAGGGGAGCAAGAAA
CGTAAAGCAGGGGAGGGCGAAGAACAGAGTGGCTCCGACAGCGAAGACAA
AGAAGGAGAGGAGAGCGCCTCAACCAGAGCTGCGGGGAAGGGGAAGGGGA
AAAGTAAGAAGAGCAGCGGGAAGAAGCCTCGACGCGCGGCGACGGGGGCA
TCATCAGTTTCCCCGTCCAAGCTGCCAAAAATCCCTTCCCAGTCTGGCCA
CGACGGCGATATCCAGATCCAGAGAAGGTGAGGCGAGCTCATCCTTTGAC
TACAAGAGCGGTACTGAAGACGCGTTCACGGCTTGTGCACAAGGCGACAA
CCGCCCGCGCCTGGGGTGCTACTTTGGTGATTTGTTGGTCTGCGCAAAAT
GGGTCGTGAACGATCGAATGTTCAATGTTCTTCGGCAAAAACGGTCGTGT
TCAAAATCAAAGTGCACGGGACACATGTCGCACAGGCGCCCTTACCTATC
CATGCCCTGCCCTGCGGATGTTGGTGTGTACTTCGTATTTCGGTAGGGCT
GAAAGCACCCGTGTGCACCAAATCAGGTCGCCGCTGAGCACGGACTTTCC
GGAGAAGGATCTTGACGACGTTCAGCTCGACAAATTACCGATGCTGATGT
TCATGTGCCTCAACCGCGCAGACCATCTACTTCAGGACAACTCAGCTGCC
TCTACCCGCCTGGGCCACGTCATCTACCACCTTTGCAAGAATCAACTTCA
CCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig658:156840..157692-

>mRNA_P-littoralis_Contig658.34.2 ID=mRNA_P-littoralis_Contig658.34.2|Name=mRNA_P-littoralis_Contig658.34.2|organism=Pylaiella littoralis U1_48|type=CDS|length=582bp|location=Sequence derived from alignment at P-littoralis_Contig658:156840..157692- (Pylaiella littoralis U1_48)
TACAAGTGCACGAGCTGCGGCACCATCCACACAGGCGGATGCTCCGAAAC
TTACGCCGGAGACGAAGGCGACGAAGAAGCAAACGACCGCAGCAAAGTTC
GACGGTGCAAGGACTGCGACAGGACGAAAAAGGGAGAGGGGAGCAAGAAA
CGTAAAGCAGGGGAGGGCGAAGAACAGAGTGGCTCCGACAGCGAAGACAA
AGAAGGAGAGGAGAGCGCCTCAACCAGAGCTGCGGGGAAGGGGAAGGGGA
AAAGTAAGAAGAGCAGCGGGAAGAAGCCTCGACGCGCGGCGACGGGGGCA
TCATCAGTTTCCCCGTCCAAGCTGCCAAAAATCCCTTCCCAGTCTGGCCA
CGACGGCGATATCCAGATCCAGAGAAGGGCTGAAAGCACCCGTGTGCACC
AAATCAGGTCGCCGCTGAGCACGGACTTTCCGGAGAAGGATCTTGACGAC
GTTCAGCTCGACAAATTACCGATGCTGATGTTCATGTGCCTCAACCGCGC
AGACCATCTACTTCAGGACAACTCAGCTGCCTCTACCCGCCTGGGCCACG
TCATCTACCACCTTTGCAAGAATCAACTTCAC
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