mRNA_P-littoralis_Contig658.31.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig658.31.1
Unique NamemRNA_P-littoralis_Contig658.31.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig658.31.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig658contigP-littoralis_Contig658:150867..151349 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size189
Hectar predicted targeting categoryother localisation
Exons2
Cds size186
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791371.3208764-CDS-P-littoralis_Contig658:150866..1509481680791371.3208764-CDS-P-littoralis_Contig658:150866..150948Pylaiella littoralis U1_48CDSP-littoralis_Contig658 150867..150948 +
1680791371.3313417-CDS-P-littoralis_Contig658:151243..1513471680791371.3313417-CDS-P-littoralis_Contig658:151243..151347Pylaiella littoralis U1_48CDSP-littoralis_Contig658 151244..151347 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig658.31.1prot_P-littoralis_Contig658.31.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig658 150867..151347 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig658.31.1

>prot_P-littoralis_Contig658.31.1 ID=prot_P-littoralis_Contig658.31.1|Name=mRNA_P-littoralis_Contig658.31.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=62bp
AVINSCHFVFRGCFLGFPKIFINDKWADVNIMEAAAGEMDDRNGWSLRDS
SGWRGDFGVRCG
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mRNA from alignment at P-littoralis_Contig658:150867..151349+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig658.31.1 ID=mRNA_P-littoralis_Contig658.31.1|Name=mRNA_P-littoralis_Contig658.31.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=483bp|location=Sequence derived from alignment at P-littoralis_Contig658:150867..151349+ (Pylaiella littoralis U1_48)
GCCGTCATCAACAGCTGCCATTTTGTCTTCCGCGGTTGCTTCTTGGGGTT
CCCAAAGATATTCATCAACGACAAGTGGGCAGGTATGTATGGGGAGGAAG
CCGTAAGGATTGACATGATGCAGCACACGTGCAAACACAGCGCCGGTGTC
GTCCGTTTTGTTGAAGATGGAGCATGTCGGGAGCTCCTGATTTCAATTCG
GGGCAATTTCCTTTCGGTAATCCGGCGCTGCGAGCTTGTGGTCGAATGAT
CGTCTTTGTTGCTGGCATGTTGTCCCATAACTATGTTCAAAGGCGTCCCT
GTGCATCCCTTTTTTTTTGCCCCTAACTAATGTCGTACGTTCATGCTTCG
TAATTGTTTTCTGTATTTTGGCCACAGATGTCAACATCATGGAGGCCGCC
GCCGGCGAGATGGATGATAGGAACGGGTGGTCGTTACGGGACAGCAGTGG
CTGGCGAGGGGATTTCGGTGTCCGTTGCGGAAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig658:150867..151349+

>mRNA_P-littoralis_Contig658.31.1 ID=mRNA_P-littoralis_Contig658.31.1|Name=mRNA_P-littoralis_Contig658.31.1|organism=Pylaiella littoralis U1_48|type=CDS|length=186bp|location=Sequence derived from alignment at P-littoralis_Contig658:150867..151349+ (Pylaiella littoralis U1_48)
GCCGTCATCAACAGCTGCCATTTTGTCTTCCGCGGTTGCTTCTTGGGGTT
CCCAAAGATATTCATCAACGACAAGTGGGCAGATGTCAACATCATGGAGG
CCGCCGCCGGCGAGATGGATGATAGGAACGGGTGGTCGTTACGGGACAGC
AGTGGCTGGCGAGGGGATTTCGGTGTCCGTTGCGGA
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