mRNA_P-littoralis_Contig658.27.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig658.27.1
Unique NamemRNA_P-littoralis_Contig658.27.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig658.27.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig658contigP-littoralis_Contig658:148425..149739 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size179
Hectar predicted targeting categoryother localisation
Exons2
Cds size177
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791371.2760296-CDS-P-littoralis_Contig658:148424..1485081680791371.2760296-CDS-P-littoralis_Contig658:148424..148508Pylaiella littoralis U1_48CDSP-littoralis_Contig658 148425..148508 +
1680791371.2903516-CDS-P-littoralis_Contig658:149644..1497371680791371.2903516-CDS-P-littoralis_Contig658:149644..149737Pylaiella littoralis U1_48CDSP-littoralis_Contig658 149645..149737 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig658.27.1prot_P-littoralis_Contig658.27.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig658 148425..149737 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig658.27.1

>prot_P-littoralis_Contig658.27.1 ID=prot_P-littoralis_Contig658.27.1|Name=mRNA_P-littoralis_Contig658.27.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=59bp
IKTRPPRRKKTQTHLEAKAINSTSTRPQFLRSVGNNSSNPPGRVAAAGAE
AGVASGGAG
back to top

mRNA from alignment at P-littoralis_Contig658:148425..149739+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig658.27.1 ID=mRNA_P-littoralis_Contig658.27.1|Name=mRNA_P-littoralis_Contig658.27.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1315bp|location=Sequence derived from alignment at P-littoralis_Contig658:148425..149739+ (Pylaiella littoralis U1_48)
ATCAAAACGCGTCCCCCCCGACGCAAAAAAACACAGACCCACCTTGAAGC
CAAGGCCATCAACAGCACCTCTACACGGCCACAGGTGAGCACCTAGCTCG
CGTGCGCGTGTACTGGCAGTAGGTACGATAGGTGACGTGCATTCTGTTCC
CGCCAGACCTCGCGCGACCTACTGATCGGCAGGCAAAGAAACGTGATCGA
TGTGTGTTGTGTTTTAGTAAAGCGCTCCTTCTCTAGCTGGTAGTATTCGA
TGCGGCTCATCAATCTAAAGAACACAGCAAACAAGCATCTAACTCAATTC
GCTGCTTCCCAACACGGGAAAGGAAGATCGCAACGAGAACACCAACCTCC
GAACAAATGAAAAGTGGCGCATTGGTCGTTTGTCTTACCTTGTCTACGTA
GTGTGTGAAGATGGAAGCAGCAGGGAGATAGAGAGAGAGAGAGAGAGGTG
TACGCAAGCGAACGTCTCCTCTCACTTCTTTGTAGTTTATCCCTGTCCCC
CTGTCTCTCATCTTCGCATTATATAAACCCTCAGCAGCAGCAGCACACAG
CAGTGACTTCGTGACTACAACAAGGGTAGTCACAGCGTGCATCTTGGTAC
TCATAGGGTGCCAACGCTGGTGCTTGCCGTTGTTGTTAGTCTTGACCATT
CAGTGACGGCCTCATGCTTAGCAGCATACCGCGGTGAACTACAAGGAAGG
GTACACACCCTGTGGTACATATTATATTATACGAGTAACATATGAATGAG
TCCATCCTTATATTTTTGGTATATAACTCCTGCTGTACCAGTTTATATAC
AACTAAATATGGATACTGCTGTGTTGAGTAGTGCAAAGAGACGCGGCTTC
GTCCTGTCCACAGCAGCAGTACCGTTTGCCGCAGTCACACAGCAGTGGCG
GCCATTATGCTTCGAGCAGCAGTATACTGCGGTACTCCTGTTGTTACAGG
TGGGCTTTGTCGGTCTTTAAGCTCGAGGACGCCATGAGTGCCGGGTACTA
CTTTTGCTGCATGTATAATGATGTAACAGCAGTTTGCTTCTATTTTATAG
TACACCATAAAATACTTTCAGCTATCGTGTGTTGGTCCTGCATCATCAGT
TGCAGTGCACACTAGTGGTGGTATGATAAGGGAGCGACAAGATGTATTTT
ACCACAATCCCAACAGCAATCCAACCCCCATTCTGACGGCAGCACTCTTT
CCTCTTTCCTTGCTTTTCAGTTCCTACGCAGCGTGGGCAACAACTCCTCG
AATCCCCCAGGCAGGGTGGCGGCGGCAGGAGCAGAGGCGGGCGTGGCAAG
CGGAGGAGCGGGGGT
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig658:148425..149739+

>mRNA_P-littoralis_Contig658.27.1 ID=mRNA_P-littoralis_Contig658.27.1|Name=mRNA_P-littoralis_Contig658.27.1|organism=Pylaiella littoralis U1_48|type=CDS|length=177bp|location=Sequence derived from alignment at P-littoralis_Contig658:148425..149739+ (Pylaiella littoralis U1_48)
ATCAAAACGCGTCCCCCCCGACGCAAAAAAACACAGACCCACCTTGAAGC
CAAGGCCATCAACAGCACCTCTACACGGCCACAGTTCCTACGCAGCGTGG
GCAACAACTCCTCGAATCCCCCAGGCAGGGTGGCGGCGGCAGGAGCAGAG
GCGGGCGTGGCAAGCGGAGGAGCGGGG
back to top