mRNA_P-littoralis_Contig658.14.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig658.14.1
Unique NamemRNA_P-littoralis_Contig658.14.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig658.14.1 vs. uniprot
Match: A0A6H5JMP6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMP6_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 6.370e-31
Identity = 64/127 (50.39%), Postives = 84/127 (66.14%), Query Frame = 1
Query:    1 DCRRKCLPTGRMSWEYKGRTQAGVEVDWLSEDQILKAKSFTPLQLDGFIALWHLYHPNITPSEEANHDPRAAIA----LSRKAALQLYPIGTHVQKDFGSGLTLNGQVFDFKDRYWRVRYTDNNWEK 369
            DCRR    T ++ WEY+G+  +G   DWLSED +L+  SFTPLQLDGF+ALWHLYHP     ++AN  P  ++     LSR  AL+L+PI   ++K+   G+ L GQVFDF   YWRV Y+D NWE+
Sbjct:  746 DCRRSRSRT-QVVWEYRGKLGSGAVSDWLSEDVMLR--SFTPLQLDGFVALWHLYHP-----QQANDLPPVSVKPRAPLSRAEALKLFPIDFTLRKELDGGVNLQGQVFDFLQPYWRVGYSDQNWEE 864          
BLAST of mRNA_P-littoralis_Contig658.14.1 vs. uniprot
Match: A0A6H5KEH2_9PHAE (RNA-directed DNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEH2_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 2.040e-29
Identity = 61/124 (49.19%), Postives = 78/124 (62.90%), Query Frame = 1
Query:    1 DCRRKCLPTG-RMSWEYKGRTQAGVEVDWLSEDQILKAKSFTPLQLDGFIALWHLYHPNITPSEEANHDPRAAIALSRKAALQLYPIGTHVQKDFGSGLTLNGQVFDFKDRYWRVRYTDNNWEK 369
            DCRR    +G R  WEYKG++  GV  DWL E+ +   +SFTPLQLD F+ALWHLY P +  +  A    +    LSR  AL ++PIG   QK+   G+ L GQV+D+   YWRVRYTD NWE+
Sbjct: 1750 DCRRVQPASGMRTVWEYKGKSGNGVVSDWLPEETM--RRSFTPLQLDCFVALWHLYFPQLA-NASAPDSVKPRTPLSRAQALHVFPIGFTFQKELAGGILLQGQVYDYVSPYWRVRYTDGNWEE 1870          
BLAST of mRNA_P-littoralis_Contig658.14.1 vs. uniprot
Match: A0A6H5KNP4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNP4_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 9.160e-17
Identity = 47/116 (40.52%), Postives = 66/116 (56.90%), Query Frame = 1
Query:   37 SWEYKGRTQAGVEVDWLSEDQILKAKSFTPLQLDGFIALWHLYH-PNITPSEEANHDPRAAIALSRKAALQLYPIGTHVQK---DFGSGLTLN-GQVFDFKDRYWRVRYTDNNWEK 369
            +WEY+G+ Q G    WL+ED +    SF+PLQLD F ALW  YH  ++ P              +R+AALQ +P+ T V K   D    + L+ G+V DF D YWRV ++D +WE+
Sbjct: 1565 AWEYRGKYQDGTTSSWLTEDTV--KDSFSPLQLDVFHALWEDYHGSDVAPRPPGAPTRGEREVATREAALQEFPLNTEVAKELRDKDDNIILSRGKVCDFYDPYWRVEFSDGDWEE 1678          
BLAST of mRNA_P-littoralis_Contig658.14.1 vs. uniprot
Match: A0A6H5K3V4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3V4_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 1.510e-15
Identity = 44/116 (37.93%), Postives = 67/116 (57.76%), Query Frame = 1
Query:   37 SWEYKGRTQAGVEVDWLSEDQILKAKSFTPLQLDGFIALWHLYH-PNITPSEEANHDPRAAIALSRKAALQLYPIGTHVQKDF----GSGLTLNGQVFDFKDRYWRVRYTDNNWEK 369
            +WEYKG+ Q G   DWL+ED +    SF+PLQL  F AL   YH  ++ P              +R+AAL+ +P+ T V ++     G+ +   G+V DF D YWRV+++D++WE+
Sbjct: 2110 AWEYKGKYQEGTPSDWLTEDTV--KDSFSPLQLGIFHALCEDYHGTDVAPRPPGALSRGEHEVATREAALKEFPLDTEVARELLDSDGNVVVSRGKVCDFYDPYWRVKFSDDDWEE 2223          
BLAST of mRNA_P-littoralis_Contig658.14.1 vs. uniprot
Match: A0A6H5JAJ3_9PHAE (RT_RNaseH_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAJ3_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 2.120e-13
Identity = 43/116 (37.07%), Postives = 61/116 (52.59%), Query Frame = 1
Query:   37 SWEYKGRTQAGVEVDWLSEDQILKAKSFTPLQLDGFIALWHLYHPNITPSEEANHDPRAAIAL-SRKAALQLYPIGTHVQKDF----GSGLTLNGQVFDFKDRYWRVRYTDNNWEK 369
            +WEY+   Q G    W +E+++    SF+PLQLD F AL+ L++        A    R    + SR+ ALQL+P+GT V ++F    G         FD  D YWRV Y D +WE+
Sbjct: 1813 TWEYQDHYQDGALSPWPTEEEV--GDSFSPLQLDVFHALYELFYGENGAPRPAGPPTRGEREVASREQALQLFPVGTQVGREFADSDGHLKVFKATAFDCCDPYWRVEYPDGDWEE 1926          
BLAST of mRNA_P-littoralis_Contig658.14.1 vs. uniprot
Match: A0A6H5KBF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBF4_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 2.270e-7
Identity = 26/49 (53.06%), Postives = 33/49 (67.35%), Query Frame = 1
Query:  223 LSRKAALQLYPIGTHVQKDFGSGLTLNGQVFDFKDRYWRVRYTDNNWEK 369
            L R  ++Q+   G   QKDFG G  L GQVF  +DRYWRVRY++ NWE+
Sbjct: 1068 LQRGLSVQVKMQGFTSQKDFGGGQKLQGQVFGHRDRYWRVRYSNQNWEE 1116          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig658.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JMP6_9PHAE6.370e-3150.39Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KEH2_9PHAE2.040e-2949.19RNA-directed DNA polymerase n=1 Tax=Ectocarpus sp.... [more]
A0A6H5KNP4_9PHAE9.160e-1740.52Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K3V4_9PHAE1.510e-1537.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAJ3_9PHAE2.120e-1337.07RT_RNaseH_2 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5KBF4_9PHAE2.270e-753.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig658contigP-littoralis_Contig658:102304..102726 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size423
Hectar predicted targeting categoryother localisation
Exons1
Cds size423
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791371.746455-CDS-P-littoralis_Contig658:102303..1027261680791371.746455-CDS-P-littoralis_Contig658:102303..102726Pylaiella littoralis U1_48CDSP-littoralis_Contig658 102304..102726 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig658.14.1prot_P-littoralis_Contig658.14.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig658 102304..102726 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig658.14.1

>prot_P-littoralis_Contig658.14.1 ID=prot_P-littoralis_Contig658.14.1|Name=mRNA_P-littoralis_Contig658.14.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=141bp
DCRRKCLPTGRMSWEYKGRTQAGVEVDWLSEDQILKAKSFTPLQLDGFIA
LWHLYHPNITPSEEANHDPRAAIALSRKAALQLYPIGTHVQKDFGSGLTL
NGQVFDFKDRYWRVRYTDNNWEKSPAPNSSVYCGLDRLRVL
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mRNA from alignment at P-littoralis_Contig658:102304..102726+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig658.14.1 ID=mRNA_P-littoralis_Contig658.14.1|Name=mRNA_P-littoralis_Contig658.14.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=423bp|location=Sequence derived from alignment at P-littoralis_Contig658:102304..102726+ (Pylaiella littoralis U1_48)
GACTGCCGCAGAAAATGTCTACCGACAGGCCGAATGAGTTGGGAATACAA AGGTCGCACTCAAGCAGGAGTAGAGGTGGACTGGTTATCGGAGGATCAGA TTTTGAAGGCTAAATCGTTCACACCGCTCCAGTTAGATGGTTTCATAGCT CTTTGGCATCTGTACCACCCCAATATCACCCCCTCGGAAGAGGCGAACCA TGATCCCCGCGCCGCTATCGCCCTCTCTCGCAAAGCCGCCTTACAATTGT ATCCGATAGGTACCCACGTGCAGAAGGATTTCGGTTCTGGTCTAACCCTG AACGGACAGGTGTTCGACTTTAAAGATCGATACTGGAGGGTGCGCTACAC GGACAACAACTGGGAGAAGTCACCCGCACCGAACTCAAGCGTTTACTGCG GGCTTGATAGACTTAGGGTTTTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig658:102304..102726+

>mRNA_P-littoralis_Contig658.14.1 ID=mRNA_P-littoralis_Contig658.14.1|Name=mRNA_P-littoralis_Contig658.14.1|organism=Pylaiella littoralis U1_48|type=CDS|length=423bp|location=Sequence derived from alignment at P-littoralis_Contig658:102304..102726+ (Pylaiella littoralis U1_48)
GACTGCCGCAGAAAATGTCTACCGACAGGCCGAATGAGTTGGGAATACAA
AGGTCGCACTCAAGCAGGAGTAGAGGTGGACTGGTTATCGGAGGATCAGA
TTTTGAAGGCTAAATCGTTCACACCGCTCCAGTTAGATGGTTTCATAGCT
CTTTGGCATCTGTACCACCCCAATATCACCCCCTCGGAAGAGGCGAACCA
TGATCCCCGCGCCGCTATCGCCCTCTCTCGCAAAGCCGCCTTACAATTGT
ATCCGATAGGTACCCACGTGCAGAAGGATTTCGGTTCTGGTCTAACCCTG
AACGGACAGGTGTTCGACTTTAAAGATCGATACTGGAGGGTGCGCTACAC
GGACAACAACTGGGAGAAGTCACCCGCACCGAACTCAAGCGTTTACTGCG
GGCTTGATAGACTTAGGGTTTTG
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