mRNA_P-littoralis_Contig656.12.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig656.12.1
Unique NamemRNA_P-littoralis_Contig656.12.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig656.12.1 vs. uniprot
Match: A0A6H5KQL9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQL9_9PHAE)

HSP 1 Score: 289 bits (739), Expect = 3.010e-96
Identity = 144/165 (87.27%), Postives = 147/165 (89.09%), Query Frame = 1
Query:  232 MMNYNEFQRSSKGWRFSPKVLRWALYALAKMGSAGYNVIQDVLHL----------LAAAGTTRLGVQHHLVEAYGKMAAEDNLGRFDLCGILVWDLMHLNTNGFKVRPNGGGIQGLVDPDSILRHPLDGVKGVAENISLEEILETFVATQYPEVFWVSIGNPKYE 696
            MMNYN+FQ SSKGWRFSPKVLRWALYALA MGSAGYNVIQDVLHL           AAAGTT  GVQHHLVEAYGKMAAEDNLGRFDLCGILVWDLMHLNTNGFKVRPNGGGIQGLVDPDSILRHPLDGVKGVA+NISLEE LETFVATQY EVFWVSIGN KY+
Sbjct:    1 MMNYNKFQGSSKGWRFSPKVLRWALYALANMGSAGYNVIQDVLHLPSIGHLRKVRRAAAGTTTWGVQHHLVEAYGKMAAEDNLGRFDLCGILVWDLMHLNTNGFKVRPNGGGIQGLVDPDSILRHPLDGVKGVADNISLEETLETFVATQYLEVFWVSIGNLKYK 165          
BLAST of mRNA_P-littoralis_Contig656.12.1 vs. uniprot
Match: A0A6H5KFP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFP1_9PHAE)

HSP 1 Score: 275 bits (704), Expect = 1.780e-83
Identity = 146/247 (59.11%), Postives = 180/247 (72.87%), Query Frame = 1
Query:   46 LRDKVKHLEEEVRRIRKEDIRIAADAEWDQGRRLHEALSGE-EPRKLFDKLPEGSLARAVVDEMMNYNEFQRSSKGWRFSPKVLRWALYALAKMGSAGYNVIQDVLHL---------LAAAGTTRLGVQHHLVEAYGKMAAEDNLGR--------------------FDLCGILVWDLMHLNTNGFKVRPNGGGIQGLVDPDSILRHPLDGVKGVAENISLEEILETFVATQYPEVFWVSIGNPKYE 696
            LRD ++H+E ++RR R++D+ IAAD E  QGRRLHE LSG  + + +F +LPEGSLARAVV+EMM YN+ + S+KGWRF+ KVLRWA YALAKMG AGY V++DVLHL         +AA+ +T++G Q+HL+EA+ KMA EDN                       FDL GILVWDLMHLN N F+V PNGGGI+GLVD DS  RHPLD V+GV E+I+LE+ LETFVATQY EVFWVSIGNPKY+
Sbjct:  212 LRDHIRHMEVQLRRCREDDVVIAADNE--QGRRLHETLSGNPDVKDVFARLPEGSLARAVVEEMMRYNQHRGSAKGWRFNAKVLRWACYALAKMGGAGYQVLRDVLHLPHIKHVQKIVAASTSTKMGEQYHLIEAFAKMACEDNXSTSRYVELFWFYSLLWRPYGLVFDLLGILVWDLMHLNQNDFRVCPNGGGIEGLVDRDSFFRHPLDAVQGVDEHITLEKTLETFVATQYLEVFWVSIGNPKYK 456          
BLAST of mRNA_P-littoralis_Contig656.12.1 vs. uniprot
Match: A0A6H5K7Z3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z3_9PHAE)

HSP 1 Score: 267 bits (682), Expect = 5.410e-82
Identity = 136/227 (59.91%), Postives = 165/227 (72.69%), Query Frame = 1
Query:   46 LRDKVKHLEEEVRRIRKEDIRIAADAEWDQGRRLHEALSGEEPRKLFDKLPEGSLARAVVDEMMNYNEFQRSSKGWRFSPKVLRWALYALAKMGSAGYNVIQDVLHL----------LAAAGTTRLGVQHHLVEAYGKMAAEDNLGRFDLCGILVWDLMHLNTNGFKVRPNGGGIQGLVDPDSILRHPLDGVKGVAENISLEEILETFVATQYPEVFWVSIGNPKYE 696
            LRD+ ++ E+ V    K+DI I    + DQGRRLHEAL  E+  +LF  +PE S  RA+VD MM+ NE +   KGWR+SPKV+RW  YALAKMG AGY +I+D+LHL           A  GT   G+QH L+EA+GKMAAE+NLGRFDL GIL WD MHLNTNGF VRPNGGGI GLV  DS+L HPL+ V+GV + ISLE+ LETF+ATQY EV+WVSIGNPKY+
Sbjct:   15 LRDRARYWEQRVEESAKDDIVIHPGEDDDQGRRLHEALKTEDVEELFADIPEDSYERALVDHMMDRNEREGPKKGWRYSPKVVRWYCYALAKMGKAGYALIRDILHLPSISTVNRARRAGRGTATWGLQHDLIEAHGKMAAEENLGRFDLAGILCWDCMHLNTNGFTVRPNGGGISGLVSGDSVLYHPLEAVQGVDKTISLEDTLETFMATQYLEVWWVSIGNPKYK 241          
BLAST of mRNA_P-littoralis_Contig656.12.1 vs. uniprot
Match: D7FZI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI2_ECTSI)

HSP 1 Score: 144 bits (364), Expect = 5.550e-36
Identity = 85/220 (38.64%), Postives = 122/220 (55.45%), Query Frame = 1
Query:   67 LEEEVRRIRKEDIRIAADAEWDQGRRLHEALSGEEPRKLF-DKLPEGSLARAVVDEMMNYNEFQRSSKGWRFSPKVLRWALYALAKMGSAGYNVIQDVLHLLAA---------AGTTRLGVQHHLVEAYGKMAAEDNLGRFDLCGILVWDLMHLNTNGFKVRPNGGGIQGLVDPDSILRHPLDGVKGVAENISLEEILETFVATQYPEVFWVSIGNPKYE 696
            L E +  +RKE +R+  +    QG  LH+ L   E +++   +LP+GS  R   ++ + +N     +KG+RF P  +R A+Y     G+A YN++++VLHL +          A   R GV    +  YGK+AA  +  + DL G+L WDLMHLN NGF   PNGGG  GLVD  +          GV + +  E ILE  VATQY E+F+VSIG P+Y+
Sbjct:  395 LRERIVSMRKECVRVPVE----QGEALHKFLVDAETKEVIHSRLPQGSDQRYFYEDQVKWNTSHGKAKGFRFHPATMRLAIYIQGIAGTAAYNMLRNVLHLPSPERIKQLRRNAAPPRTGVLTENILKYGKLAATQDADKVDLMGVLTWDLMHLNKNGFSFAPNGGGFTGLVDETTFFNPIYKHEGGVVKEV--EPILEKIVATQYVEMFFVSIGKPEYK 608          
BLAST of mRNA_P-littoralis_Contig656.12.1 vs. uniprot
Match: A0A6H5KVF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF4_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 4.080e-34
Identity = 83/220 (37.73%), Postives = 120/220 (54.55%), Query Frame = 1
Query:   67 LEEEVRRIRKEDIRIAADAEWDQGRRLHEALSGEEPRKLF-DKLPEGSLARAVVDEMMNYNEFQRSSKGWRFSPKVLRWALYALAKMGSAGYNVIQDVLHLLAA---------AGTTRLGVQHHLVEAYGKMAAEDNLGRFDLCGILVWDLMHLNTNGFKVRPNGGGIQGLVDPDSILRHPLDGVKGVAENISLEEILETFVATQYPEVFWVSIGNPKYE 696
            L E +  +RKE +R+  +    QG  LH+ L   E +++   +LP+GS  R   ++ + +N     +KG+RF P  +R A+Y     G+A YN++++VLHL +          A   R  V    +  YGK+AA  +  + DL G+L WDLMHLN NGF   PNGGG  GLVD  +          GV + +  E  LE  VATQY E+F+VSIG P+Y+
Sbjct:  486 LRERIVSMRKECVRVPVE----QGEALHKFLVDAETKEVIHSRLPQGSDQRYFYEDQVKWNTSHGKAKGFRFHPATMRLAIYIQGIAGTAAYNMLRNVLHLPSPERIKQLRRNAAPPRTCVLTENILKYGKLAATQDADKVDLMGVLTWDLMHLNKNGFSFAPNGGGFTGLVDETAFFNPIYKHEGGVVKEV--EPTLEKIVATQYVEMFFVSIGKPEYK 699          
BLAST of mRNA_P-littoralis_Contig656.12.1 vs. uniprot
Match: A0A6H5L5M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5M0_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 1.810e-27
Identity = 65/173 (37.57%), Postives = 93/173 (53.76%), Query Frame = 1
Query:  205 SLARAVVDEMMNYNEFQRSSKGWRFSPKVLRWALYALAKMGSAGYNVIQDVLHLLAA---------AGTTRLGVQHHLVEAYGKMAAEDNLGRFDLCGILVWDLMHLNTNGFKVRPNGGGIQGLVDPDSILRHPLDGVKGVAENISLEEILETFVATQYPEVFWVSIGNPKYE 696
            +L      + + +N     +KG+RF P  +R A+Y     G+A YN++ +VLHL +          A   R GV    +   GK+AA  +  + DL G+L WDLMHLN NGF   PNGGG  GLVD  +          G+ + +  E ILE  VATQY E+++VS+G P+Y+
Sbjct:  296 TLPLPCAQDQVKWNTSHGKAKGFRFHPATMRLAIYIQGIAGTAAYNMLTNVLHLPSPERIKQLRRNAAPPRTGVLTENILKNGKLAATQDTDKADLMGVLAWDLMHLNKNGFSFAPNGGGFTGLVDETTFFNPIYKHEGGIVKEV--EPILEKIVATQYVEMYFVSVGKPEYK 466          
BLAST of mRNA_P-littoralis_Contig656.12.1 vs. uniprot
Match: A0A6H5K071_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K071_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 2.020e-8
Identity = 41/131 (31.30%), Postives = 69/131 (52.67%), Query Frame = 1
Query:   91 RKEDIRIAADAEWDQGRRLHEALSGEEPRKLFDKLPEGSLA-------------RAVVDEMMNYNEFQRSSKGWRFSPKVLRWALYALAKMGSAGYNVIQDVLHLLAAAGTTRLG---------VQHHLVE 417
            R++DI I A  E DQG++L + L  ++ +   ++L   + A              ++  +   +N    S KGWR++PKVLRWALYA+ + GS+ Y V+++VLHL       ++G         +QHH ++
Sbjct:  201 REDDIIIPA--EEDQGQQLFDLLQHDDIQNKGERLCNQNDAISASITTTCVRFGTSLSQDNYEWNRVNGSKKGWRYNPKVLRWALYAMHRCGSSAYEVLREVLHLPDPRHVRKIGMKTDPISAGIQHHNIK 329          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig656.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5KQL9_9PHAE3.010e-9687.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFP1_9PHAE1.780e-8359.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7Z3_9PHAE5.410e-8259.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZI2_ECTSI5.550e-3638.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KVF4_9PHAE4.080e-3437.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5M0_9PHAE1.810e-2737.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K071_9PHAE2.020e-831.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig656contigP-littoralis_Contig656:117483..119125 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size698
Hectar predicted targeting categoryother localisation
Exons5
Cds size696
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791370.2492514-CDS-P-littoralis_Contig656:117482..1177101680791370.2492514-CDS-P-littoralis_Contig656:117482..117710Pylaiella littoralis U1_48CDSP-littoralis_Contig656 117483..117710 +
1680791370.2633638-CDS-P-littoralis_Contig656:118087..1182271680791370.2633638-CDS-P-littoralis_Contig656:118087..118227Pylaiella littoralis U1_48CDSP-littoralis_Contig656 118088..118227 +
1680791370.2731094-CDS-P-littoralis_Contig656:118257..1183061680791370.2731094-CDS-P-littoralis_Contig656:118257..118306Pylaiella littoralis U1_48CDSP-littoralis_Contig656 118258..118306 +
1680791370.2833462-CDS-P-littoralis_Contig656:118581..1188241680791370.2833462-CDS-P-littoralis_Contig656:118581..118824Pylaiella littoralis U1_48CDSP-littoralis_Contig656 118582..118824 +
1680791370.2976015-CDS-P-littoralis_Contig656:119088..1191241680791370.2976015-CDS-P-littoralis_Contig656:119088..119124Pylaiella littoralis U1_48CDSP-littoralis_Contig656 119089..119124 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig656.12.1prot_P-littoralis_Contig656.12.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig656 117483..119124 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig656.12.1

>prot_P-littoralis_Contig656.12.1 ID=prot_P-littoralis_Contig656.12.1|Name=mRNA_P-littoralis_Contig656.12.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=232bp
RLRSSRRRPRIIELYLRDKVKHLEEEVRRIRKEDIRIAADAEWDQGRRLH
EALSGEEPRKLFDKLPEGSLARAVVDEMMNYNEFQRSSKGWRFSPKVLRW
ALYALAKMGSAGYNVIQDVLHLLAAAGTTRLGVQHHLVEAYGKMAAEDNL
GRFDLCGILVWDLMHLNTNGFKVRPNGGGIQGLVDPDSILRHPLDGVKGV
AENISLEEILETFVATQYPEVFWVSIGNPKYE
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mRNA from alignment at P-littoralis_Contig656:117483..119125+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig656.12.1 ID=mRNA_P-littoralis_Contig656.12.1|Name=mRNA_P-littoralis_Contig656.12.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1643bp|location=Sequence derived from alignment at P-littoralis_Contig656:117483..119125+ (Pylaiella littoralis U1_48)
AGGTTGCGAAGCTCGAGGCGCAGGCCAAGGATAATCGAGCTCTATTTACG TGATAAGGTAAAGCATCTCGAGGAGGAAGTGCGGAGGATTCGCAAGGAGG ACATCCGGATAGCGGCAGACGCGGAATGGGACCAGGGTCGTCGGCTCCAC GAGGCCTTGTCGGGAGAGGAACCGAGAAAGCTGTTCGACAAGCTCCCGGA GGGCAGCCTGGCGAGGGCGGTGGTGGACGTGAGTGTAGTATTTACGTCCT TGGTGTCGTCGGTGTTGCGAGTAATGTTTGAACCACACTGCTCCGGAATG CCATAGCGCGCGACCACACGACAGGCTAGTGTACCTTCGATAACGTACCA GCAGGGTCATGGCCGATGACCGCTGTGGATGCCACTCACAGCGCTAAGAT CCTTTGGCACTATGCCCCCCTCCCCCTCCATGCCCAACTGGGACGCAGTC AAGTGTTGTCGTCTTGTCGCAGGGTCATCGTACAGATGAGGCTGCGATGC ATATTTTATTCGCTCCGATGTTTGGTGTCCCTTCACGTCGACGACTTTCC CGACACGTAGGAAACAGTAGCACTGAGCCCTTTCTGACTCCACTTGTGTA TGCAGGAGATGATGAACTACAACGAGTTCCAGAGGTCCTCGAAGGGATGG CGATTCAGTCCAAAGGTGCTTAGGTGGGCCTTGTACGCCTTGGCGAAGAT GGGCTCGGCTGGGTACAACGTCATCCAAGACGTTCTTCATCTCCTGTCCA TCGGTCACCTCAGGAAGGTCAGGAGGGCCGCTGCCGGGACGACGAGATTG GGCGTACAACACCACCTCGTGGAGGTACACCTCACTTCCCTCTGTAGGCT AGCCCGACGTTTGTCGCTTTGAAATGTTTTGGGTCCAAATACTGCCACGG GCCACCATGGAATATGGGGACCTTCGTTTATCTGAATCAGCTTCGGCGAG TTGAACGTCGTCACCGGGTGTTTTGAGCAGTGTCAGATGTAGTCGTTGTA GTATACGCGAAACATGTTTCAGTCGCGGCCTGTGTGCTGCATTATCTTTG AGTTCGCCTCTCCTCCCCTCCCGCACGCTTCTCATGCTCTTTTCCTTAGG CATACGGTAAGATGGCAGCCGAAGACAACCTTGGCAGGTTCGACCTGTGC GGCATCCTCGTCTGGGATCTGATGCATCTCAACACCAACGGCTTCAAGGT GCGACCGAATGGCGGAGGGATACAAGGCCTGGTCGACCCGGACTCGATAT TGCGCCACCCGCTGGACGGCGTGAAAGGGGTGGCCGAGAACATCAGCTTG GAAGAGATACTCGAGACCTTCGTTGCCACCCAATACCCTGAGGTGAAGAG TACATTTATGAGTTTTTTTTCGTTTTTTTGTCACGGTAGTTCGCCATGTA GACTCTTCGGCGGTACGAATCTGTGTCATGTGGTTGAAACACCCACCGCT TACATACGTATCGCGCTCTCTGTGCCTGGATGGCCATGTCTTTTATCCTG CCAACCCGGTCGTGTGCTCTAGACATTTGCATCCACCTACACAGCCATCC CGCGACGTTGTACTTAATTCATTTTTTTTTTCTCTTCCACTCCCTGCATT TGAAAGGTGTTCTGGGTTAGCATCGGAAACCCGAAGTACGAGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig656:117483..119125+

>mRNA_P-littoralis_Contig656.12.1 ID=mRNA_P-littoralis_Contig656.12.1|Name=mRNA_P-littoralis_Contig656.12.1|organism=Pylaiella littoralis U1_48|type=CDS|length=696bp|location=Sequence derived from alignment at P-littoralis_Contig656:117483..119125+ (Pylaiella littoralis U1_48)
AGGTTGCGAAGCTCGAGGCGCAGGCCAAGGATAATCGAGCTCTATTTACG
TGATAAGGTAAAGCATCTCGAGGAGGAAGTGCGGAGGATTCGCAAGGAGG
ACATCCGGATAGCGGCAGACGCGGAATGGGACCAGGGTCGTCGGCTCCAC
GAGGCCTTGTCGGGAGAGGAACCGAGAAAGCTGTTCGACAAGCTCCCGGA
GGGCAGCCTGGCGAGGGCGGTGGTGGACGAGATGATGAACTACAACGAGT
TCCAGAGGTCCTCGAAGGGATGGCGATTCAGTCCAAAGGTGCTTAGGTGG
GCCTTGTACGCCTTGGCGAAGATGGGCTCGGCTGGGTACAACGTCATCCA
AGACGTTCTTCATCTCCTGGCCGCTGCCGGGACGACGAGATTGGGCGTAC
AACACCACCTCGTGGAGGCATACGGTAAGATGGCAGCCGAAGACAACCTT
GGCAGGTTCGACCTGTGCGGCATCCTCGTCTGGGATCTGATGCATCTCAA
CACCAACGGCTTCAAGGTGCGACCGAATGGCGGAGGGATACAAGGCCTGG
TCGACCCGGACTCGATATTGCGCCACCCGCTGGACGGCGTGAAAGGGGTG
GCCGAGAACATCAGCTTGGAAGAGATACTCGAGACCTTCGTTGCCACCCA
ATACCCTGAGGTGTTCTGGGTTAGCATCGGAAACCCGAAGTACGAG
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