mRNA_P-littoralis_Contig655.7.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig655.7.1
Unique NamemRNA_P-littoralis_Contig655.7.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig655.7.1 vs. uniprot
Match: D7G5H7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5H7_ECTSI)

HSP 1 Score: 332 bits (851), Expect = 1.040e-104
Identity = 178/263 (67.68%), Postives = 196/263 (74.52%), Query Frame = 1 
Query:  109 QLGTQPESQDNVAQQSTPPSTSRRVFRQ-LSGRFRGPNSNVSELDLPIRRE-----------------------------KNHR-FWLPYIRVHTANILVENGDAFVHHAFMSRDVETPWWFSIKGIVMRNRHLDVKGLFSHSYANEVYKSRTQIVTFVENYVEDENADELEARVKTNKSLWGLAGHFSSAAGRGRRLAMFAIEEVDASVNIDPIDPPPALRRVGVGEEFTEADSLLPRPFSSVDIGHFLALMQTKSIPALVC 804
            Q GTQ  S+    Q+S P + S R   Q L  RFR  + +VSE DLP RRE                             + H  FW PYIRVHTAN+LVENGDAFVHHAFMSRDV+ PWWFSIKGIVMRNRHLDVKGLFSHSYA+EVYKSRTQ+VTF+ENYVEDENAD+LE+ +KTNKSLWGL+   S   GRGRRL+MFAIEEVDASVNIDPIDPP A RRV VGEEFTEAD+LLPRPFSSVDIGHFL +MQTKSIPALVC
Sbjct:  168 QFGTQAVSRSPTVQRSPPRAASNRWMHQFLPSRFRDTDVDVSETDLPRRRETTTTVNPMMNVFKALAGVALGGADMDSRTRGHPGFWPPYIRVHTANVLVENGDAFVHHAFMSRDVDHPWWFSIKGIVMRNRHLDVKGLFSHSYASEVYKSRTQVVTFIENYVEDENADDLESMIKTNKSLWGLSRDTSKDLGRGRRLSMFAIEEVDASVNIDPIDPPAAFRRVVVGEEFTEADALLPRPFSSVDIGHFLTVMQTKSIPALVC 430
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig655.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G5H7_ECTSI1.040e-10467.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig655contigP-littoralis_Contig655:72293..78228 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size807
Hectar predicted targeting categoryother localisation
Exons6
Cds size804
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig655.7.1prot_P-littoralis_Contig655.7.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig655 72293..78226 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791368.2847707-CDS-P-littoralis_Contig655:72292..724331680791368.2847707-CDS-P-littoralis_Contig655:72292..72433Pylaiella littoralis U1_48CDSP-littoralis_Contig655 72293..72433 +
1680791368.3005328-CDS-P-littoralis_Contig655:75892..761411680791368.3005328-CDS-P-littoralis_Contig655:75892..76141Pylaiella littoralis U1_48CDSP-littoralis_Contig655 75893..76141 +
1680791368.3143916-CDS-P-littoralis_Contig655:76395..765001680791368.3143916-CDS-P-littoralis_Contig655:76395..76500Pylaiella littoralis U1_48CDSP-littoralis_Contig655 76396..76500 +
1680791368.3266613-CDS-P-littoralis_Contig655:76730..768061680791368.3266613-CDS-P-littoralis_Contig655:76730..76806Pylaiella littoralis U1_48CDSP-littoralis_Contig655 76731..76806 +
1680791368.3368888-CDS-P-littoralis_Contig655:77408..776141680791368.3368888-CDS-P-littoralis_Contig655:77408..77614Pylaiella littoralis U1_48CDSP-littoralis_Contig655 77409..77614 +
1680791368.3502884-CDS-P-littoralis_Contig655:78199..782261680791368.3502884-CDS-P-littoralis_Contig655:78199..78226Pylaiella littoralis U1_48CDSP-littoralis_Contig655 78200..78226 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig655.7.1

>prot_P-littoralis_Contig655.7.1 ID=prot_P-littoralis_Contig655.7.1|Name=mRNA_P-littoralis_Contig655.7.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=268bp
AEKLPGERVSSSQTSSSHGSPASAESQAQQANEAGSQLGTQPESQDNVAQ
QSTPPSTSRRVFRQLSGRFRGPNSNVSELDLPIRREKNHRFWLPYIRVHT
ANILVENGDAFVHHAFMSRDVETPWWFSIKGIVMRNRHLDVKGLFSHSYA
NEVYKSRTQIVTFVENYVEDENADELEARVKTNKSLWGLAGHFSSAAGRG
RRLAMFAIEEVDASVNIDPIDPPPALRRVGVGEEFTEADSLLPRPFSSVD
IGHFLALMQTKSIPALVC
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mRNA from alignment at P-littoralis_Contig655:72293..78228+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig655.7.1 ID=mRNA_P-littoralis_Contig655.7.1|Name=mRNA_P-littoralis_Contig655.7.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5936bp|location=Sequence derived from alignment at P-littoralis_Contig655:72293..78228+ (Pylaiella littoralis U1_48)
GCTGAGAAACTGCCCGGAGAACGCGTGAGCTCTTCCCAGACCTCAAGCTC
GCACGGATCGCCAGCTTCGGCGGAGTCGCAGGCGCAGCAGGCCAACGAGG
CTGGGTCACAGCTGGGAACACAGCCAGAATCCCAAGACAATGTGAGCAAC
GAAATAAACAAATACCAGGTATAGACAGCAGTGTCGTCTGTGTACAAATG
TATGTTGACTTTTCTGAGGGGGGGTGGAGGGAATGGCGGGAGGGCTTTTT
GCTGAAGGATTTATCGCAGTGTGGCAGTGTCAAGTGTGTGTGTTGTTGTT
GTTGTTGATGAATTTCACATTGGCTGGGCACCAAAATAAATCTAGCCCAT
CGTATCACCAACCAGACTCATATCATAGGAGGAAATAAAAATATAAATGA
AATGGTCACCCAGGAAACAAAAATCAGACATAGTGTCGTACCGTTGGGGT
ACCTTTTGTGGTGGCCAATGTACCAAACAAAATACAGAAAAAAAAATACA
CAGGCTCGAAATACAAAAATGAAAACAAATGAACCACGAAACCCCCAAGG
AAAATCAAAGATAAAATATACGACAACAAAAAAGGGGGGAATACAGAGTG
AAGAAAAAGGTAAACCAACAAGGAGCAAGAAAAAAAAAAAAAATGCATGC
AATCAGTCGCAAGCACGTCTCGCCACAAGGCCTGCCTGTTCACGCTTGCT
CTCCTCAAACGCACTCGTGCCCCCTGTCACTGGCACCACCGTACACAGTT
GTTACTTCTGCCCTACATCTTTGGCAGCAGCAACACCGCCCTGCAACTTC
TGCCCCACAGATTTTTTAATCCTACCACCCCGCAGCAGAAGTCGCGGGTT
GTGATACGCAACCTTGTTGTTGTCGTTGTTCTTGTTCTTGTTCTTGTTCT
TGTTCTTGTTCTTGTTCTTGTTCTTGTTCTTGTTCTTGCTCTTGTTGTTG
TTGTTGTCGACGGTTCTTCCATTTTGGATCACCGTCAAGATCGAAACCAC
GCACACTGCAGACGGTACCGTTCTTGAAGGTAAAAAAACAATTTAGAGGA
AGAAAAAGAAGGCACAAGCAGGGATATACGAGGTATGTCGCTTCGAAGTA
CTGTTTGAGTACCAAATACTCCGCTGGTAAAAAAGTATGTTTTTCCAATT
TTTCCGTGTGTCTCTATGTACAGCAGTAACATCGTTCTCCGCAAATCAAC
CCCCCCCCTCAAAACAAATGTAGTCATGCTTCCATTCCTTTTTTTTCCTT
TGCATCTGTACGTGCAGTATGTGAACTGCTGCACACTGCTGTTTCACCGC
TGCACGGTTTGGCAGCTAGATCACCTGCTGTCTTCAGTTCGACGTTGTTT
TTTTCCTGCTTCTACAGTACGCGACACGTGTTAAGAAACCAGATTAGAAA
CCCAGCCTGAGATTTCTGGAAATTTAAGCATGTACAGGAAAGCAATTGTG
CTCAGTCTGTATAGTTTCTATTGGGGTACGCCCACAGAAGAAATAAAGCG
CGAGCCTCAGCTTAAATAGGAGTTCCTTAACATGTGTCGAGTACGGTACT
CTTTCATTTTATTTCCTGTGTGTGGTGACCCCGCCCAGAAAATACGGGAC
AAACACACGCACACATTCACTTTGACATTGACATGTACATGATGGAAGCG
GTACATCTTTACGGCGGAACGTCCCCCTTTCTTTTCTATGTGATAACAGC
GGTATATCTTCTCCTTTCAGTTCAGCTTTTATCGCGACAAGGGCTTTTCT
CAAAAGTTACGCTCTCCCCTATGTTTTCCCATTTATTGATATTTTAAACT
GCTCCAACTGGTCAGAGTCGCTTGATAACAGGGGGATAGATAAACGCTTC
GTTTGCTTCTTCGAAATAAACACAGTAAGCGAATTCGAGCGGTCGTCACG
AATCACTGTTTTGGAAGATAAGGAGGGGGGCTTCGTGGTATGATAAGGAG
AAGGGGAGGGGGAGGGGCGTGTGAAACATACAAAAAACAAAATGGAAGTA
TGAAACGTTTCAAACCCTCCGAGATGCGAAGGTGAACTTCGTTGTTGATA
TATACACGGATGGGCGCGATGCGACGAAATTCAATAATTGAATGCGCTGC
GAATAGAATTGAATGCGCTGCGAATAGATGCGGAGGTTAGGGAGAAAGGG
AGGGGGGGGCGTGTACAACATACAAAATAAAATGGAAAACGTCTGAAACT
CGAAGAAAGATCTCTCACCTCTCATCCCCCCCGGGATTGCGTTTTTTGGC
ACGCGGATGGGCGCGATGCGACAAAATTCAACAATCCAATCAAATAATGC
ATTGCCAGCAGATGCGGCGCGATTAGAAATTGTACGACTTGATGCAGTGG
AATTAGATTCGGAGCGATGAAATGCGGTACCGAGCCTTTTTTCGTGTCTT
GATGTGTTTGTTACAAAATTGGAAAAAAACAAACACGATAGAAGTCACCA
CCAAGGATGATTCTATGGCAGCACAACTAAAAGTTGTAAACACTCAACAC
ATGATGTAATGTGTGTCACACAAGATTACCACCAAAAAAGTGTCTTGTTG
AGCCTGATACCCTCACAGGGGAGCTGCAACGGTACATTATCTGATGAGTT
ATCGAAACACTAGTGAATTACCCTACTTATTCGCTGCAATATCTACTCCA
GACCCTCGTCTGGAGAGAGGCGAACACACTGATTGATGTGTCCGTAAGAA
TTTTGAAAAGAAAACAAATGTCAATTTGTTCGCCTCTCTCTACATACTCG
TAGACAACGATCTGGAGCAGCAAGCGACGAACTGTTTTTTTTTGTTTGTA
CTGTTTCCAATTTTTGTTTTTTCTTTCGAATCTGTTATTTATTTATTTCT
GTACTTTGTTCGGTACTTTGGCCACCACAGATGGTACCCCAACGGTACCC
TATCTGATTTGACTGTGGGTGATCATAGTCAATACTCCGTATATGTTATT
TTTTATTTTTTCTCCTAGCACGATATGTGCCTGGTTTGTGACCACGGGCT
AGACTGCGGCGGTAGTGAGCTAATGTGAGAATCAACAACAACAACAACAA
CAACAACATACAGACAACGAAGACTAGAGTGTATGTACTACGTCAGCCTG
TGTCTCTAAAAGTCATCAGATATTATATCGTTGCAGCTCCCGTGGAAAGT
ATAACACTTGCGAACCTGTTTCTGTTCGTGGAGGAGGGGATGTTGCGCTA
GAACAGGACGTATGATATCATAACATCTGTGAGGGGGACGTCGTCCTGAG
AGGAAAGATCTTTTATGGGAAGAGAGGCCGCTGCAAGATGCGCAGACACA
GCGAGTTGTTGTTTTTGTTGTTGTTGATTCTCACATTATTCGCTCACTAC
CACCGCAGTCTAACCCGTGGTCACAAACCAGGCACATATCGTGCTAGGAG
GGAAAAGAAAAAAAAGAAAAAAAATGGACTACGATCACTCACAGTCAAAT
CAGATAGGGTACCGTTGGGGTACCATCTGTGGTGGCTAAAGCACAAAAAA
ACACAGAAAAAAAATACAGCGAGTGTGTGCGTGTGTGGTGTTGTTGCTGT
TGCTGCCAAGGCTGGAATTTGATATTTAATATTTGTTGTGTTATCGTCAG
GTTGCACAGCAGTCCACGCCGCCTTCGACCTCAAGAAGAGTCTTCAGGCA
GCTCTCCGGTCGTTTCCGCGGCCCTAACTCTAACGTTTCCGAACTGGACC
TCCCGATCCGACGGGAGAAGAATCACCGGTTCTGGCTCCCTTACATCCGG
GTGCACACCGCGAACATCCTCGTGGAAAACGGCGATGCTTTCGTCCATCA
CGCCTTCATGAGCCGCGACGTAGAGACTCCGTGGTGGTTCTCGATCAAGG
TACAGTAACCCTTACCCTAACCCTAACCTGATTGTGAAGGAGTAATGCGC
AATGCCGCAGGAGCTCCTACACATGATACCTACCGCGGTTTGGGCGTTTC
AGCAGGTATCATATTCTCCGAAATTTCCCGGAGTTTGTTTTTTCAGCCTT
TCGGCAGGCATTCCTTTTTGCAGAAGCTCCATAACTCTATTTTTTTTAAC
TCTTGTGTTTGGGCTTTGTTGGGCCGATTTCACGCCTCTTTTCGTTTCCT
CAGGGCATCGTGATGAGGAACCGGCACTTGGATGTGAAGGGGCTCTTCTC
TCACAGCTACGCCAACGAGGTGTACAAGAGCAGGACACAGATTGTGACTT
TCGTTGAGGTGAGACCTTGATCTTGTTATTGTTGTTGTTGTCGTTGTTGT
TGTTGTTGATCTTGTTGTTGTTGTTGTTGTTGTTGGTGGTGGTGGTGGTG
GTGGTGGTTCTATCTGCTTCTTTGGCGCCGATGGGAAAATCCAAGTCGCC
GATTAGCTCGCTCGGGGGTATAGCAACGTTTTATTACGTTGTTTCAGTTG
GTGACCACACGAGTGTTTTGGTGCTATGATATTGACAGAACTACGTGGAA
GACGAGAACGCAGACGAGCTGGAGGCTAGGGTCAAGACCAACAAGAGCCT
GTGGGGCCTGGCAGGTATGATAAGAGCCTTGCCGTTGTTTTTACGATGTA
CAGTTTTTTGTGTGTGCATCGTAAGCGTAGATCAGTCGTGTCGCCAACTA
CGCAGCGCTGAGGAAGAGATAGCGAGAAAGAGAGAGAGAGGTGGTGGAGA
GTAGTTGGCTGCACGCCAGCCAACGTGAAAACAAAGCATTTGTCCTTCGA
TTATTCCATGCATGGGGGCGTGCAAGGGCTGTGCAGAACAATGAGGCGCT
TTCTATGGCACACGCACGCCTTCTCGGGGTTTCCGTGAGAACGGGGCCAG
CCGCCCTTTTCTCCCGTCTCGTCAGCAAAGTCATCAGTACCATCTTCAGA
TCTGTACTTCACCCCACCGCACCCGTCCATCGTGTATAGCTGGTACGAAG
TATTTTTTAGTTCATGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CCCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCGCCCGTCCCATACCCTACTTTCTAGATAAGTCT
TGCTCATGTCCCCCATATGATTCTTTCAAAACTCACTTGCATGCTATGCT
ACAACGACCCCGACAGGGCACTTTTCAAGCGCTGCGGGGCGCGGTAGACG
GCTGGCGATGTTCGCCATCGAGGAGGTCGACGCCTCAGTGAACATAGACC
CCATCGATCCTCCCCCCGCCTTGAGGAGGGTGGGCGTCGGAGAGGAGTTC
ACAGAGGCGGACTCGTTGCTGCCCAGGCCCTTCAGTTCGGTGGACATTGG
GCACTTCCTGGCCCTGATGCAGGTGAGTGGGCGAGCCGGAGGGAGGGGGC
ACCGGGAGACAATGGGGGGGTGGGGGGGTTGATGCAGGTGAGTGAGCGAG
CCGGAGGGAAAGGGGCACCGGGAGACAATGGGGGGGGGGTGGTGCAGGTG
AGTGGGCGAGCCGGAGAGTGGCGCTGGAGGGTAAGCGGGTGAGTAGGATT
GGAGGAGAGGGGAAGGCGGGCGGTCCAGCCCTCATACGGGTGGATTGCGT
GTCTCGTTAGGAGTAGTAGAAGTGTACCACAATGGATGTTCGGCGGTCTG
ACTGTCTTTTTTCACTGATACTGCTGTACACTGTACTTTAGTTCGTCTTG
TCGGCATCACTCGGCGGTCACCCAAGTCGTCGTTTCCTGGCCCCGGTGCA
GGTGGGGGGCGCATGGAGGCACGGCAGCACGATTGGGAGGGGGGGGGGGG
GGAGATAAAGTGAAGTACGGCACAATCAGTCGTTTTTGTTAGCACTACGA
TTGACTCTGACTTGTGATGTGTTCTGATAAACCCCCCCTCCTCTATCTCC
CCTGCTGGGTCTCTCGTGCTGCCGCCGATCACATCCGCGCGCTGTTGCTC
TTCCCAGACCAAGAGCATCCCGGCCCTGGTGTGTTT
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Coding sequence (CDS) from alignment at P-littoralis_Contig655:72293..78228+

>mRNA_P-littoralis_Contig655.7.1 ID=mRNA_P-littoralis_Contig655.7.1|Name=mRNA_P-littoralis_Contig655.7.1|organism=Pylaiella littoralis U1_48|type=CDS|length=804bp|location=Sequence derived from alignment at P-littoralis_Contig655:72293..78228+ (Pylaiella littoralis U1_48)
GCTGAGAAACTGCCCGGAGAACGCGTGAGCTCTTCCCAGACCTCAAGCTC
GCACGGATCGCCAGCTTCGGCGGAGTCGCAGGCGCAGCAGGCCAACGAGG
CTGGGTCACAGCTGGGAACACAGCCAGAATCCCAAGACAATGTTGCACAG
CAGTCCACGCCGCCTTCGACCTCAAGAAGAGTCTTCAGGCAGCTCTCCGG
TCGTTTCCGCGGCCCTAACTCTAACGTTTCCGAACTGGACCTCCCGATCC
GACGGGAGAAGAATCACCGGTTCTGGCTCCCTTACATCCGGGTGCACACC
GCGAACATCCTCGTGGAAAACGGCGATGCTTTCGTCCATCACGCCTTCAT
GAGCCGCGACGTAGAGACTCCGTGGTGGTTCTCGATCAAGGGCATCGTGA
TGAGGAACCGGCACTTGGATGTGAAGGGGCTCTTCTCTCACAGCTACGCC
AACGAGGTGTACAAGAGCAGGACACAGATTGTGACTTTCGTTGAGAACTA
CGTGGAAGACGAGAACGCAGACGAGCTGGAGGCTAGGGTCAAGACCAACA
AGAGCCTGTGGGGCCTGGCAGGGCACTTTTCAAGCGCTGCGGGGCGCGGT
AGACGGCTGGCGATGTTCGCCATCGAGGAGGTCGACGCCTCAGTGAACAT
AGACCCCATCGATCCTCCCCCCGCCTTGAGGAGGGTGGGCGTCGGAGAGG
AGTTCACAGAGGCGGACTCGTTGCTGCCCAGGCCCTTCAGTTCGGTGGAC
ATTGGGCACTTCCTGGCCCTGATGCAGACCAAGAGCATCCCGGCCCTGGT
GTGT
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