mRNA_P-littoralis_Contig655.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig655.3.1
Unique NamemRNA_P-littoralis_Contig655.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig655.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig655contigP-littoralis_Contig655:39142..44833 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size754
Hectar predicted targeting categoryother localisation
Exons3
Cds size495
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791368.0224683-UTR-P-littoralis_Contig655:39141..392501680791368.0224683-UTR-P-littoralis_Contig655:39141..39250Pylaiella littoralis U1_48UTRP-littoralis_Contig655 39142..39250 +
1680791368.0358105-UTR-P-littoralis_Contig655:39276..393901680791368.0358105-UTR-P-littoralis_Contig655:39276..39390Pylaiella littoralis U1_48UTRP-littoralis_Contig655 39277..39390 +
1680791368.0611944-UTR-P-littoralis_Contig655:44797..448331680791368.0611944-UTR-P-littoralis_Contig655:44797..44833Pylaiella littoralis U1_48UTRP-littoralis_Contig655 44798..44833 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791368.050209-CDS-P-littoralis_Contig655:44302..447971680791368.050209-CDS-P-littoralis_Contig655:44302..44797Pylaiella littoralis U1_48CDSP-littoralis_Contig655 44303..44797 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig655.3.1prot_P-littoralis_Contig655.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig655 44303..44797 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig655.3.1

>prot_P-littoralis_Contig655.3.1 ID=prot_P-littoralis_Contig655.3.1|Name=mRNA_P-littoralis_Contig655.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=165bp
MVTVTRSRSGGSRGRSASRGRATARSVTRTTGGRSASRASPRASVRTPAR
RTARPTRARSSPRSGGEGDDGSTTVAALQAEMAEMQAEMQAREGAIQQLQ
AEVDDFWAANAAVPARSSTLPATGEGSDDEVAVRGTGHSDNPPPPPAFSP
PTAHLTAHLRQVEW*
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mRNA from alignment at P-littoralis_Contig655:39142..44833+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig655.3.1 ID=mRNA_P-littoralis_Contig655.3.1|Name=mRNA_P-littoralis_Contig655.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5692bp|location=Sequence derived from alignment at P-littoralis_Contig655:39142..44833+ (Pylaiella littoralis U1_48)
TCGGGAAAAGGTTCACGGCATAGGTCTTCCCCGCTAGAGAGCGTAGAGAT
CGCTAGCACAAACTTGGACAGAGAGAAGATTAGAGTCGAGCCAGCTTAGT
AGGGGCCGAGCTGGCGAGTCTGTGTATATGCCGAGCTGGCGAGTCTGTGC
ATCTTCATCCAAGCCTACGCGTGTGCGAGCCTCCTTTGACCGACCGAGTC
TTCACAGTCGGGGTTTCACGTCAGGGTCCTCGGGCACTCCCGCGTACCGG
TGAGCAAAGAGTACTTTACGGCCTGATCCGGCATTTGCCCTGCGATCGCT
CGCGTGTGTCGCCGCCCGCGTTGTCGCCGCCCGCACTTGTCGACTGCGTG
ATCAACGGAGAATAACCCACCTGGTGTGTCAGAGTTGCGCATCCCCTGGT
ATGATACAGTCGGGTTTGTTGGCGACAATGAATCCGCTGCGCATCCCGGG
CCCATTTGGGGCTTCTGATGGCGGAAGGAATCTCCCGACACGGTTGTCGT
GGTTCTTTACATGGTATTATTTCTTCCCGTGACCACTCATCATGTGCGCC
GTTCGGCACAACAAGCAGATGCACGAGTACTCATTTGTCTAGACTGCTGT
ATCTCGTATTATGGCGGTTCACCCTATCTTTGTCTAGAGGACATACGATA
CACAAGTCGCCTCCTTTCCAGAGGACACACGTATGAGACACATGTCGCTG
GCTTCTATTTGCCATCAATTTTCGTTTCTTGCCACTAATTTCATCGGAAA
TACTTCGTTTCCTTGTCAAGAGGACATATCACATGATATGTACGAGACAC
ATGTCGCTGGCTTCTATTTGCCATCAATTTGTTTTCTTGACACTATATAT
CCATCGGAAATACTTTGTATCCCCGATACGCTACAGCAGTACAGCAGTCA
GGGCGGGGTCATGACATTTCAATCGCCGCGGCTTTCTAGCGCGCACCCAC
CGCCACGCCAAGACGACATATCAAATCACAGGATACGTCGAGTGGGTTGT
TATCGCGTCGTATACAACAGCTCCGCTGTCGGGACACATTGCATCAATCG
CACTGTGCAGTCACGTGCCTTTCTTCGGCTGTCGCGCATTTACGCGATCC
ACCTAGCCACCTGGTACCATATGTCAAGATGACATACCGTACGTATATGC
ATCGATGGTTATTTCCACCATCATAACAGGTTGTTGGGACACTTTACATT
AACAGTATCGTGCGGTCACGTTCCTTTCGTTACTGGCTGTCGTACACCTG
CGTGCGATCAACACAACTACCTGGTACCTTATGTCAAGATGACATATCAT
ACATCGATGGTTTTTTCACCATCATAATAAGTTTGGCGGGACATCATACA
TTAATGGTATCGTGCGGTCACATTCCCTTCGTCGACTGTCGTACACCTGC
GTACGATCCACCCAACTACCCGGTACCGTATGTCAAGATGACATGCATCG
ATGGTTCTTTCGCCATCTTACAAGTTCGAGGTGTCGGGACACCATACATC
GACTGTTGTCGCGCGTCTCTACCCATATCTAGACGACATATATATGTACT
ACATCGATGTTTTTCAACCTTGCCGATGGTTTCCCACAACCACCCTGTGC
CTTCCGTCAAGAGGACATACGAAGTATTATATTACTGCCCATTGTGATAC
CGAATTGTTCACAACGGCGGCATCGAATCTCAACGTAAAAATGCTACTGT
GGCCCGCTACCCAGATGACACATCGTCAGCTGTTTGAATGTATCGATGGT
CTCTTTGCTGTTATCACGACCACCTCAGCTCAGTGTCCGGGAACACACCA
CACACAGATCACACGGAGTATCATTATACTTCGAAGTATAATATTATACG
GATGCAACAGCGCGATATATGTGTGAGATATCATATACTCCGGAGTACCT
GGTATATCTTAACTCGTACCGTCTGTGACGAAGACATCCTACCGGATCCC
AGTTTTATACCGCATGCACATTGCTGTTGCGCTCAAAAAGGTGTCCGTTA
CAAGTTATTTTGTTTTTTATTTATTTTATAACATATGAGAAGGGTTGTAT
CATACATGTGTACCCTGAAAGACATGTCACTACGTACTACGGCGCGCGGA
AACAGAGGTACCGAAGAAATCGTGTGTATGAAAATCGGTACAGCATGGTG
CATCAAACTTGATGAAACTCGACATATTTGAACGTGGTTGCAGCAATACA
AGGTGTACGGTATCCCGAATACGACTGCTGTTGGCATGCACTCTGAGTTA
GCACACATATCGGAATACGACTGCTGTGGGTCTACATGGTGAGTTGGCAC
CAATGACGGAGCCACCGTCAATAAGAATCAATAAGAGTACGAAACAAATA
CATACGTCTGCTGAATGAAGTCCTTCGCATGCCGTGCGCGGGAATAAAGG
CAACAGCGGAACAACAGCTGAATAATGTACGTCGTCAGGTGGGTGAAATC
GACACCGGTCAGCTTGGGGACAGCCATACGCGCAGTGTTTCGTATCCCAA
ACTAGCTGCTGTTGGCCCCGAGTGCCAGATGAACCATTGGTTACGTGTGT
GATATGTCATGTTGATAACAAGTAAGCAGCAAGAACTATGATAGTCGCCA
AACCACAGTATTATGTCAGCTCGGCACGTACCAGTAGTACGCCACTGAAA
TCGCCCACAGACCCATACGGCGTGTGGACCGACGACTTCTATGGGCCCAG
TAAATACCCCTGGTATTCGAGTATGATATTATATCGACTTCTATGGGCCC
AGTAAAGACCACTAACCGTTGGTATTCAAGTATGATATTACTCGTATATC
GTATGTGATCGCGACCATATTACCGCGGAAGAAATAATAAAATACATTAC
AGACGAGGACGATGCCGAATATGACGATGGGACAGCACCGCGGAAGAAAT
AAATAAATACATGACAGACGAGTACGACGTCGAACATGACAGTGGCACAG
ACTACTGCTGCTGTTGGTGCATACATTACATACAGCAGTAATTATTGTTG
ATAAATCACTGGTATCCGTATTGTCTAATACGAAGTATGTAATCTTGACA
ACAGCCACGCATCAATAAATACCCATCGACCGACAACAATGGCCGCTGGA
AATGTGCCAGGTAAAACAACTACGAACGTCGAAGCACGTACAAACTTCGT
TTGGTATACTCCCGAGTATAACAATAATCAAGTGCGACAGACAGGAGGTA
GATGTGCGTGCGTCTAGTGAGAGACGGTACAACAAATAGTATCGGTAGCG
GTACCACCATGCGCATGCCAACTACCGCAGTCGTATGAGAGACGCTGCCT
CTTGACGCTACAGTGTGTTACAGCGGATGTAGTGTAGTAGCTTGCGTGCA
CGTTACCGGAGCCATATACACGTTGCAACAGTCATGTGCGTTATAGTGGA
CGTCATGTACGTTCGGTTCGTCAGGCGTTACGGTAGAGTGCCGTGGCGTA
CGTTGTATCTTTATTGCTACCGCAGCTTGCATGCCTGTCATTGCAGCCAT
ATATCGCCCACGTCGAAGCCACAGTAGTGTGCGTTGTCGCTGCCGTCGTG
TATGCTCGATCTGTCGGGCTTTACATTGTGCCTGCCCATCACCGCAGCCA
CATTATACAGTAGCGTGCGTTACCGCACCCGGTGTGTATGATAGGTGTGC
ACGCATGCACGCTGCGGGCCCGTTACCGTAACCGTATAAAAGTCACACCG
TAGCCGTATTCATCCACTGAGCCGACGCACACCAGCTTTAGTAATTCACC
GAGCCTTCGCGTCACGACAGGTGCGACAATGCGAAACACATACTTGTACT
GCAATGGCAAACGTCCGATCGCAGCGCATACTAGTTGCTGCCGCTGTGTA
ATGGTGTACCGCCGTCCCGCTGCGCGTGCGGTCCACCGCCATTTCACGCG
CACGTGCCCTCGACTCATGTGTGTATGCTCCAAGTTAATTATGCCCTTCC
AGCACAGTCAAGATCATCGATTCACGTGCGGTCCACCGCCATTTCACGCG
CACGTGCCTTCGACTCATGTGTGTATGCTCCAAATTAAATTATGCCCTTC
CAGCACAGTCAAAATCATCAATTCACCTGTGCACTGCGTGACTTGCCATT
GTATTACACATGTACTGAGGCCGGGGTGGGACCTGCGCTCGGACGCATAC
GCACAATGTCGTAAACTGTGGGGGTGATGCGTATACCTGTTGGCCCAACA
CGGCGGGGGAGCTATGTAGGACGTGCATGCCGTTCCGTTCACACCCGACA
TTGTTGCACAGGAGTAACAGCTTTATCTGTGCTTGCCCTATACTATTTGC
TTTGCAATTCGGATCTAAAATTGTTTTTTTCTCCATGACGTACCATTCAT
GCCCGGCATTCTTTAACATGAGTATCAGTGGTACCAGTGCTTGGCCCCGT
AACGCCCGACATTCTTGAGTAGGTGTATCAGCTGTCTTATATCGGAGTAT
CAGCTGTATCGGTGCTTACACCATGTCATACGGAGTACTCTCCCTGTCGC
CTCTCGTGCGGTTTTCGGCATGAATAACCATTTTTAACAAGCGGTCCATG
ACATTTCCACACGGAGTACTCTCCCTGCCGCCTCTCGTGCGGTTTCGCCA
TAAATAGCCATTTTCGACATATCCATCCGGAGTACTCCCCCTGTCGCCTC
TCGTGTGGTTTCGCCATAAGTAACCATTTTCAACAAGCAGTCAATGTCAT
TTTCTAGCCCGGAGTGCCGCGTGGGTTGCAGACGTGCAGTTTGTCGGCCG
CCACCGCACTCCACAGCAGTCTAAAACACTGGCCAGGACGCGGGCCGCGA
AGGTGTCACATGCACCGCTTTAGCTCACCATCAATGGCCGCTGTCGCCCT
CCATTCGGAGGATACATTTGACTTTGGTGTGTGTCATCCCACAGCTACAT
CTTACTTCGGAAAGTGTTTATTTGTGTTGGCCCTTTCGCAGCCATACGCA
CACGTTTGTTGTCGGTGTCATTCCACAGCCGGCCGCACACGAGCGCACTC
CATTCGGCGTCATCGCGGTCATATCCCGTAGGAGCAACTCGTTGGATTGA
CTCCGTGTCTGTCATGTCCATCGATCTACTGCGGTCTCGATGTTTGGTGA
TGTTTTCGACTTGACATACCCTATCTGTCCGATGTTCCATACGGTTGTTC
GGTCATTTCAGATGGTTACCGTCACTAGGTCGAGATCGGGCGGGAGCCGG
GGGCGCTCGGCCAGCCGCGGACGGGCCACAGCACGGAGCGTGACCCGTAC
TACTGGGGGACGTTCGGCGTCCCGCGCCTCCCCCCGAGCCTCCGTGCGAA
CGCCTGCGCGCCGGACGGCACGCCCTACACGCGCTCGGTCATCTCCGCGT
TCGGGGGGGGAAGGTGACGACGGTAGTACTACGGTCGCCGCCCTGCAAGC
GGAAATGGCCGAGATGCAAGCCGAGATGCAGGCCCGCGAAGGCGCCATCC
AGCAGCTTCAGGCGGAGGTGGACGACTTCTGGGCGGCCAACGCCGCTGTT
CCTGCTCGGTCGTCCACCCTTCCTGCCACCGGGGAGGGTTCCGACGACGA
GGTCGCCGTAAGGGGCACGGGGCACAGTGACAACCCGCCCCCACCCCCTG
CCTTTTCCCCTCCCACCGCTCACCTGACCGCTCATCTTCGGCAGGTGGAG
TGGTAAGAAGACCTGAAGATTCCGCGCAACCCTGCTGCCCTT
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Coding sequence (CDS) from alignment at P-littoralis_Contig655:39142..44833+

>mRNA_P-littoralis_Contig655.3.1 ID=mRNA_P-littoralis_Contig655.3.1|Name=mRNA_P-littoralis_Contig655.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=495bp|location=Sequence derived from alignment at P-littoralis_Contig655:39142..44833+ (Pylaiella littoralis U1_48)
ATGGTTACCGTCACTAGGTCGAGATCGGGCGGGAGCCGGGGGCGCTCGGC
CAGCCGCGGACGGGCCACAGCACGGAGCGTGACCCGTACTACTGGGGGAC
GTTCGGCGTCCCGCGCCTCCCCCCGAGCCTCCGTGCGAACGCCTGCGCGC
CGGACGGCACGCCCTACACGCGCTCGGTCATCTCCGCGTTCGGGGGGGGA
AGGTGACGACGGTAGTACTACGGTCGCCGCCCTGCAAGCGGAAATGGCCG
AGATGCAAGCCGAGATGCAGGCCCGCGAAGGCGCCATCCAGCAGCTTCAG
GCGGAGGTGGACGACTTCTGGGCGGCCAACGCCGCTGTTCCTGCTCGGTC
GTCCACCCTTCCTGCCACCGGGGAGGGTTCCGACGACGAGGTCGCCGTAA
GGGGCACGGGGCACAGTGACAACCCGCCCCCACCCCCTGCCTTTTCCCCT
CCCACCGCTCACCTGACCGCTCATCTTCGGCAGGTGGAGTGGTAA
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