mRNA_P-littoralis_Contig654.33.3 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig654.33.3
Unique NamemRNA_P-littoralis_Contig654.33.3
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig654.33.3 vs. uniprot
Match: A0A6H5L7K6_9PHAE (PseudoU_synth_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L7K6_9PHAE)

HSP 1 Score: 378 bits (971), Expect = 5.710e-120
Identity = 207/398 (52.01%), Postives = 253/398 (63.57%), Query Frame = 3
Query:  693 QPSPPLDVLHENQDFGAVCKPPLMHVHRPEFGSKDKEFVLQKARNQLGRRIYLPHRLDRGTSGCLLVGFSPESVKVLHEALSHPTSTKTYVAIVRGSGQAFVDRGWFTVDRPMKDDKKVLREASTRFLFVRGGDCPDPRCCLVLAQPSTGRFHQIRRHLRGLSHPVVGDSVHGNSRFNREVVSHPSNAAPAGRLMLHCLQLFLPKLPDARSRVWKKSAEKTVAAEGEQMEEVYRGSRDKSEKTRLVQ--KDKGE-PGRASCSGSGSEQEGMGVSNVTGSFSVSGGAQTPAQSEKQFAHNDDGVADRKTMMD-----------------------------------------------GQEGG--------GLEVYAEPPGDMMAFLRGMSWWEEGMI 1712
            Q SPPL+VLH+N+ F  V KPP MH HRPEFGS+D +FV+QKAR+QLGRR++LPHRLDR TSGCLLVGFS  + KVLH+ L+ P S+KTY+AIVRGSG AFV +GWFTVDRP+KD+KK+LREASTRFLFVRGG+ PDPRCC VLAQPSTGRFHQIRRHL GLSHP+VGDSVHG+ RFNREV  H  N+APAGRLMLHCL+L LP LPD  S+  K +  + ++ + + M   Y GS+ KSE+    +  +++GE P R    G G+   G+       S SVS   Q P ++EK  ++  D     ++  D                                               G +G         G  VYAEPP DMM FLRGMSWWEEG+ 
Sbjct:  127 QQSPPLEVLHQNEHFAVVSKPPGMHCHRPEFGSRDPDFVMQKARDQLGRRVFLPHRLDRATSGCLLVGFSSHAAKVLHQTLAQPDSSKTYLAIVRGSGSAFVGKGWFTVDRPIKDEKKILREASTRFLFVRGGNDPDPRCCFVLAQPSTGRFHQIRRHLNGLSHPIVGDSVHGDCRFNREVAGH-RNSAPAGRLMLHCLRLSLPTLPDVGSQALKSATGRILSPDKDTMTNDYCGSKRKSERGHNARAGQERGERPSRKREDGHGNTT-GVDGREARASGSVSEEVQGPVETEKAASNTGDPYPKPRSEFDSARTPPASAPRQEISTEPFVPTLAEISAAISPSVGKKESSTRGCRPRGIDGEAQEDLVEEGFHVYAEPPDDMMEFLRGMSWWEEGLF 522          
BLAST of mRNA_P-littoralis_Contig654.33.3 vs. uniprot
Match: A0A7S2LAN5_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LAN5_9STRA)

HSP 1 Score: 182 bits (461), Expect = 3.700e-48
Identity = 104/232 (44.83%), Postives = 137/232 (59.05%), Query Frame = 3
Query:  654 RSSSRLDLSVDPAQPSPPLDVLHENQDFGAVCKPPLMHVHRPEF-GSKDKEF-VLQKARNQLGRRIYLPHRLDRGTSGCLLVGFSPES-------VKVLHEALSHPTSTKTYVAIVRGSG----QAFVDRGWFTVDRPMKDDKKVLREASTRFLFVRGGDCPDP--RCCLVLAQPSTGRFHQIRRHLRGLSHPVVGDSVHGNSRFNREVVSHPSNAAPAGRLMLHCLQLFLP 1304
            RSSS   +S +   P   +++L          KPP +  H  ++ G K+ E  +LQ+ R+ +GRR+ L HRLDRG SGCLL   + E+        KVL +AL  P +TKTYVAIVRG G    + F  +GWF +DRP+KD+  +   A T F FV G +  +   R  LVLA+PSTGR+HQIRRHL GLSHP++GDS HGNSR NRE         P  R+ LH  ++ LP
Sbjct:   37 RSSSSSSVSFEEINPINLVEILSRGPHHAIANKPPSVKCHNSDWTGPKNNEVAMLQRVRDTIGRRVNLIHRLDRGASGCLLASHAEENCDELRECTKVLSDALQSPLATKTYVAIVRGEGILKDEDFKGKGWFHIDRPIKDENGIENGAKTAFRFVAGVNRANDGVRASLVLARPSTGRWHQIRRHLNGLSHPILGDSTHGNSRTNRE---WRDRGLPGERICLHLARIQLP 265          
BLAST of mRNA_P-littoralis_Contig654.33.3 vs. uniprot
Match: A0A7S3ZM53_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZM53_9STRA)

HSP 1 Score: 171 bits (432), Expect = 2.990e-44
Identity = 102/227 (44.93%), Postives = 129/227 (56.83%), Query Frame = 3
Query:  693 QPSPPLDVLHENQDFGAVCKPPLMHVHRPEFGSKDKEF-VLQKARNQLGRRIYLPHRLDRGTSGCLLVGFSP-----ESVKVLHEALSHPTSTKTYVAIVRGSG--------QAFVD--------RGWFTVDRPMKDDKKVLREASTRFLFVRGGDCPDP-RCCLVLAQPSTGRFHQIRRHLRGLSHPVVGDSVHGNSRFNREVVSHPSNAAPAGRLMLHCLQLFLP 1304
            +P PPL++L+E   F  V KP  +  H  E+  KD    +LQ+AR+ LGRR+ L HRLDRG SGC++  ++      E    L EAL+     KTYVA+VRG G        +A  D         GWF VDRP+KDD+     A+T F FV      D  R  LV A+P+TGR+HQIRRHL GLSHP++GDS HGNSR NRE         P  RL LH  ++ LP
Sbjct:   37 EPPPPLEILYEGDTFAIVAKPGGVPSHASEYIGKDYVVPLLQRARDALGRRVNLVHRLDRGASGCVICAYADLDDAAEVTTALGEALA--AGQKTYVALVRGEGFLREDLLEKAGADVPSGDLKREGWFVVDRPIKDDRGRENNATTTFKFVASTGSEDAARASLVAARPATGRWHQIRRHLNGLSHPILGDSSHGNSRTNREW--RKERDLPGARLCLHLCRISLP 259          
BLAST of mRNA_P-littoralis_Contig654.33.3 vs. uniprot
Match: A0A7S1FQ02_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FQ02_9STRA)

HSP 1 Score: 169 bits (429), Expect = 3.130e-43
Identity = 98/238 (41.18%), Postives = 135/238 (56.72%), Query Frame = 3
Query:  723 ENQDFGAVCKPPLMHVHRPEF-------GSKDKEFVLQKARNQLGRRIYLPHRLDRGTSGCLLVGFSPES------------------------VKVLHEALSHPTSTKTYVAIVRGS----GQAFVDRGWFTVDRPMKDDKKVLREASTRFLFVRG--GDCPDPRCCLVLAQPSTGRFHQIRRHLRGLSHPVVGDSVHGNSRFNREVVSHPSNAAPAGRLMLHCLQLFLPKLPDARS 1325
            ++  +  V KPP +  HR ++       G+ +   ++Q+ R+Q+GRR+ L HRLDRG SGCLL+ F+ +S                         + L  +L+   + KTYVA+VRG     G+    RGWF VDRP++D + V REA T+F FV G   DC   R  +VLA+P TGR+HQIRRHL GLSHP++GDS HGNSR NRE  S      P  RL LH  ++ LP L ++ +
Sbjct:   74 DSSTYLVVAKPPAVACHRSDYIGRKAPDGTPEPPAMVQRIRDQVGRRVNLIHRLDRGASGCLLLAFAGDSRGEDEDGKDGEGGGEDSAERYRDTTRRLIASLADDRAVKTYVALVRGGPFLHGEDLRRRGWFAVDRPIRDARGVEREALTQFRFVAGTDDDCA-ARASIVLARPRTGRWHQIRRHLNGLSHPILGDSTHGNSRINREWRS--KRGLPGQRLCLHLAKMSLPSLENSET 308          
BLAST of mRNA_P-littoralis_Contig654.33.3 vs. uniprot
Match: A0A1Z5J6G5_FISSO (PseudoU_synth_2 domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J6G5_FISSO)

HSP 1 Score: 166 bits (421), Expect = 1.890e-42
Identity = 90/185 (48.65%), Postives = 124/185 (67.03%), Query Frame = 3
Query:  708 LDVLHENQDFGAVCKPPLMHVHRPEF-GSKDKEFV--LQKARNQLGRRIYLPHRLDRGTSGCLLVGFSPES-VKVLHEALSHPTSTKTYVAIVRGSG----QAFVDRGWFTVDRPMKDDKKVLREASTRFLFVRGGDCPD--PRCCLVLAQPSTGRFHQIRRHLRGLSHPVVGDSVHGNSRFNRE 1232
            + +L ++ D+  V KPP +  H  ++ GS+ ++ +  LQ+ R  +G RI L HRLDRG SGCLLV +  +     L +A++   +TKTY+AIVRG G    +   ++GWF VDRP+K+++ VL EAST F FV G    D  PR  LVLA+P TGR+HQIRRHL GLSHP++GDS HGNS+ N+E
Sbjct:   58 ITILAKSDDYLVVDKPPSVVCHHSDWTGSRSQQEIPMLQRVRQAVGSRINLVHRLDRGCSGCLLVTYQKDGKTATLSQAMAE-NATKTYIAIVRGEGILRGEDLKEKGWFLVDRPIKNERGVLHEASTWFRFVAGQPEVDGQPRASLVLARPMTGRWHQIRRHLNGLSHPILGDSSHGNSKVNQE 241          
BLAST of mRNA_P-littoralis_Contig654.33.3 vs. uniprot
Match: A0A1Z5K7F0_FISSO (PseudoU_synth_2 domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K7F0_FISSO)

HSP 1 Score: 161 bits (407), Expect = 1.750e-40
Identity = 97/221 (43.89%), Postives = 133/221 (60.18%), Query Frame = 3
Query:  708 LDVLHENQDFGAVCKPPLMHVHRPEF-GSKDKEFV--LQKARNQLGRRIYLPHRLDRGTSGCLLVGFSPES---VKVLHEALSHPTSTKTYVAIVRGSG----QAFVDRGWFTVDRPMKDDKKVLREASTRFLFVRGGDCPD--PRCCLVLAQPSTGRFHQIRRHLRGLSHPVVGDSVHGNSRFNREVVSHPSNAAPAGRLMLHCLQLFLPKLP-DARSRV 1331
            + ++ ++ D+  V KPP +  H  E+ GS+ ++ +  LQ+ R  +G RI L HRLDR  SGCLLV +  +      +  +A++   +TKTY+A+VRG G    +    +GWF VDRP+K+++ VL EAST F FV G    D  PR  LVLA+P TGR+HQIRRHL GLSHP++GDS HGNS+ N+E  S          L L  LQL       DARS +
Sbjct:   54 ITIVAKSDDYLVVDKPPSVVCHHSEWTGSRSQQEIPMLQRVRQAVGSRINLVHRLDRVCSGCLLVTYQKDDGDMTAIFSQAMAE-NATKTYIALVRGEGILHGEDLKQKGWFLVDRPIKNERGVLHEASTWFRFVAGQPEVDGQPRASLVLARPRTGRWHQIRRHLNGLSHPILGDSSHGNSKVNQEWRSQRGMLPERTCLHLARLQLSTETFQIDARSNL 273          
BLAST of mRNA_P-littoralis_Contig654.33.3 vs. uniprot
Match: B7FYH0_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FYH0_PHATC)

HSP 1 Score: 152 bits (384), Expect = 1.720e-37
Identity = 91/220 (41.36%), Postives = 121/220 (55.00%), Query Frame = 3
Query:  714 VLHENQDFGAVCKPPLMHVHRPEF-GSKDKEF---VLQKARNQLGRR-IYLPHRLDRGTSGCLLVGFS----------PESVKVLHEALSHPTSTKTYVAIVRGSG----QAFVDRGWFTVDRPMKDDKKVLREASTRFLFVRGGD-----CPDPRCCLVLAQPSTGRFHQIRRHLRGLSHPVVGDSVHGNSRFNREVVSHPSNAAPAGRLMLHCLQLFL 1301
            +L     +  V KPP +  H  E+ GS+   F   +LQ+ R  +G   + L HRL+ G SGCLL+ ++          P +   L  ++    S KTY+A+VRG G    + F   GWF VDRP+K++K +L  A+T F FV G D        PR  LVLA+P TGR+HQIRRHL GLSHP++GD+ HGNS  NRE         PA R  LH  +L L
Sbjct:   91 ILARTDRYVVVAKPPTVVCHHSEWTGSRSDPFQIPMLQRTREAMGGNCVNLVHRLNWGCSGCLLLTYAADTADAEIYIPNTTATLIASMKETASLKTYLALVRGEGLLQGRDFKQEGWFKVDRPIKNEKGILNNATTWFRFVAGQDNDSGRINQPRASLVLARPETGRWHQIRRHLNGLSHPILGDTSHGNSHVNREW--RDLRGMPAQRTCLHLARLQL 308          
BLAST of mRNA_P-littoralis_Contig654.33.3 vs. uniprot
Match: A0A1E7F626_9STRA (Pseudouridine synthase (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F626_9STRA)

HSP 1 Score: 149 bits (377), Expect = 2.300e-37
Identity = 88/228 (38.60%), Postives = 128/228 (56.14%), Query Frame = 3
Query:  708 LDVLHENQDFGAVCKPPLMHVHRPEFG---SKDKEFV--------LQKARNQLGRRIYLPHRLDRGTSGCLLVGFSPE------SVKVLHEALSHPTST-----KTYVAIVRGSG----QAFVDRGWFTVDRPMKDDKKVLREASTRFLFVRG---GDCPDPRCCLVLAQPSTGRFHQIRRHLRGLSHPVVGDSVHGNSRFNREVVSHPSNAAPAGRLMLHCLQLFLP 1304
            + +L    +   V KP  +  HR ++    ++ KE +        LQ+ R  +G ++ L HRLDRG SGCLL  F+        +  ++ E +++ +S+     KTY+AIVRG G    + F   GWF VDRP+KD+   L+ A++ F F+ G   G+   PR  LVLA+  TGR+HQIR+HL GLSHP++GDS HG S+ NRE +          R+ LH L+L LP
Sbjct:   12 VSILDRGDNHVVVSKPSAVICHRSDWTGRRNRKKESIITSEEVPMLQRVREAVGEKVNLVHRLDRGASGCLLFSFAKSDKDGGNATAIMQECMTNDSSSTSDTHKTYIAIVRGEGLLKGRDFRQEGWFEVDRPIKDESGNLKNATSYFRFIAGQDDGNGTRPRASLVLARIKTGRWHQIRKHLNGLSHPIIGDSTHGISKTNREWIEKWD--LKRERICLHLLKLELP 237          
BLAST of mRNA_P-littoralis_Contig654.33.3 vs. uniprot
Match: A0A448Z1P7_9STRA (PseudoU_synth_2 domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z1P7_9STRA)

HSP 1 Score: 154 bits (388), Expect = 2.580e-37
Identity = 92/230 (40.00%), Postives = 128/230 (55.65%), Query Frame = 3
Query:  708 LDVLHENQDFGAVCKPPLMHVHRPEFGSKDKEF-----------VLQKARNQLGRRIYLPHRLDRGTSGCLLVGFSPE------SVKVLHEALSHPTST-KTYVAIVRGSG----QAFVDRGWFTVDRPMKDDKKVLREASTRFLFVRG-----GDCPD-PRCCLVLAQPSTGRFHQIRRHLRGLSHPVVGDSVHGNSRFNREVVSHPSNAAPAGRLMLHCLQLFLPKLP 1313
            + +L    +   V KPP +  HR ++    K+            +LQ+AR  +G R+ L HRLDRG SGCLL+ F+        +  VL E+++  +S+ KTY+A+VRG G    + F   GWF V RP+K++   L+ A++ F F+ G     G   D PR  LVLA+  TGR+HQIR+HL GLSHP++GDS HGNS+ NRE            R  LH L+L LP  P
Sbjct:   97 VSILDRGPNHLVVSKPPSVLCHRSDWSGSGKKRSAKQRGPPEVPMLQRAREAVGERVNLVHRLDRGASGCLLMSFAGSDENGGNATAVLQESMTRTSSSHKTYLALVRGEGILKGRDFRQEGWFEVSRPIKNEAGTLKNATSYFRFIAGQGNENGALEDVPRASLVLARIKTGRWHQIRKHLNGLSHPIIGDSTHGNSKTNREW--RQKWGLEPERTCLHLLKLELPATP 324          
BLAST of mRNA_P-littoralis_Contig654.33.3 vs. uniprot
Match: A0A6S8CJW7_9STRA (Hypothetical protein n=2 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A6S8CJW7_9STRA)

HSP 1 Score: 149 bits (377), Expect = 9.690e-37
Identity = 94/219 (42.92%), Postives = 126/219 (57.53%), Query Frame = 3
Query:  702 PPLDVLHENQDFGAVCKPPLMHVHR-PEFGSKDKEF----VLQKARNQLGRRIYLPHRLDRGTSGCLLVGF-----SPESV-KVLHEALSHPTSTKTYVAIVRGS----GQAFVDRG-WFTVDRPMKDDKKVLREASTRFLFVR-GGDCPDPRCCLVLAQPS-TGRFHQIRRHLRGLSHPVVGDSVHGNSRFNREVVSHPSNAAPAGRLMLHCLQLFLP 1304
            P + VL+       V KPP + VH  P  G   K+     +LQ+AR+ LG RI L HRLDRG SGC+L         P+++   LHEAL      K YVA+VRG+    GQ+  D   WF ++RP+KD +  + +A T F F+         RC LVLA+P  +GR+HQIRRHL GLSHP++GDS HGNS+ NR    H     PA R++LH  ++ +P
Sbjct:   20 PVVQVLYRKNAVAVVAKPPSVPVHASPYVGGTIKKIEEKPLLQRARDALGSRINLVHRLDRGASGCVLCVCIDRCREPQTLTSELHEALR--VGRKRYVALVRGTRVFKGQSLGDNHTWFDIERPIKDSRGKINDARTSFRFLGYANHLNSDRCSLVLAEPQRSGRWHQIRRHLNGLSHPIIGDSSHGNSQTNRFWREH--RGLPAERILLHLARIQIP 234          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig654.33.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L7K6_9PHAE5.710e-12052.01PseudoU_synth_2 domain-containing protein n=2 Tax=... [more]
A0A7S2LAN5_9STRA3.700e-4844.83Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S3ZM53_9STRA2.990e-4444.93Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A7S1FQ02_9STRA3.130e-4341.18Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A1Z5J6G5_FISSO1.890e-4248.65PseudoU_synth_2 domain-containing protein n=1 Tax=... [more]
A0A1Z5K7F0_FISSO1.750e-4043.89PseudoU_synth_2 domain-containing protein n=1 Tax=... [more]
B7FYH0_PHATC1.720e-3741.36Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A1E7F626_9STRA2.300e-3738.60Pseudouridine synthase (Fragment) n=1 Tax=Fragilar... [more]
A0A448Z1P7_9STRA2.580e-3740.00PseudoU_synth_2 domain-containing protein n=1 Tax=... [more]
A0A6S8CJW7_9STRA9.690e-3742.92Hypothetical protein n=2 Tax=Aureoumbra lagunensis... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig654contigP-littoralis_Contig654:132401..137009 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G7M0
PFAMsPseudoU_synth_2
Model size2158
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorymitochondrion
Exons7
Evalue5.39e-125
EggNOG OGsCOG0564@1|root,KOG1919@2759|Eukaryota
Ec32 ortholog descriptionRNA pseudouridylate synthase domain-containing protein
Ec32 orthologEc-22_001870.1
Descriptionpseudouridine synthase activity
Cds size1398
COG categoryJ
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig654.33.3prot_P-littoralis_Contig654.33.3Pylaiella littoralis U1_48polypeptideP-littoralis_Contig654 132763..136611 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791367.4478507-UTR-P-littoralis_Contig654:132400..1327621680791367.4478507-UTR-P-littoralis_Contig654:132400..132762Pylaiella littoralis U1_48UTRP-littoralis_Contig654 132401..132762 +
1680791367.5531244-UTR-P-littoralis_Contig654:136611..1370091680791367.5531244-UTR-P-littoralis_Contig654:136611..137009Pylaiella littoralis U1_48UTRP-littoralis_Contig654 136612..137009 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791367.467674-CDS-P-littoralis_Contig654:132762..1331391680791367.467674-CDS-P-littoralis_Contig654:132762..133139Pylaiella littoralis U1_48CDSP-littoralis_Contig654 132763..133139 +
1680791367.4822528-CDS-P-littoralis_Contig654:134288..1343681680791367.4822528-CDS-P-littoralis_Contig654:134288..134368Pylaiella littoralis U1_48CDSP-littoralis_Contig654 134289..134368 +
1680791367.492543-CDS-P-littoralis_Contig654:134619..1347171680791367.492543-CDS-P-littoralis_Contig654:134619..134717Pylaiella littoralis U1_48CDSP-littoralis_Contig654 134620..134717 +
1680791367.506334-CDS-P-littoralis_Contig654:134976..1350751680791367.506334-CDS-P-littoralis_Contig654:134976..135075Pylaiella littoralis U1_48CDSP-littoralis_Contig654 134977..135075 +
1680791367.5176008-CDS-P-littoralis_Contig654:135356..1354841680791367.5176008-CDS-P-littoralis_Contig654:135356..135484Pylaiella littoralis U1_48CDSP-littoralis_Contig654 135357..135484 +
1680791367.527504-CDS-P-littoralis_Contig654:135741..1363121680791367.527504-CDS-P-littoralis_Contig654:135741..136312Pylaiella littoralis U1_48CDSP-littoralis_Contig654 135742..136312 +
1680791367.5424185-CDS-P-littoralis_Contig654:136566..1366111680791367.5424185-CDS-P-littoralis_Contig654:136566..136611Pylaiella littoralis U1_48CDSP-littoralis_Contig654 136567..136611 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig654.33.3

>prot_P-littoralis_Contig654.33.3 ID=prot_P-littoralis_Contig654.33.3|Name=mRNA_P-littoralis_Contig654.33.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=466bp
MLLASASRVIICCGALGFRSSSHWTGHCGRHTSLIHLETSREDAQGRQRG
RKGVRECVLKYSPPAAEASASTAATALEDRGACDVAEDEVAVKNRTGRSS
SRLDLSVDPAQPSPPLDVLHENQDFGAVCKPPLMHVHRPEFGSKDKEFVL
QKARNQLGRRIYLPHRLDRGTSGCLLVGFSPESVKVLHEALSHPTSTKTY
VAIVRGSGQAFVDRGWFTVDRPMKDDKKVLREASTRFLFVRGGDCPDPRC
CLVLAQPSTGRFHQIRRHLRGLSHPVVGDSVHGNSRFNREVVSHPSNAAP
AGRLMLHCLQLFLPKLPDARSRVWKKSAEKTVAAEGEQMEEVYRGSRDKS
EKTRLVQKDKGEPGRASCSGSGSEQEGMGVSNVTGSFSVSGGAQTPAQSE
KQFAHNDDGVADRKTMMDGQEGGGLEVYAEPPGDMMAFLRGMSWWEEGMI
QAVERSGRRPSPPPH*
back to top

mRNA from alignment at P-littoralis_Contig654:132401..137009+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig654.33.3 ID=mRNA_P-littoralis_Contig654.33.3|Name=mRNA_P-littoralis_Contig654.33.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=4609bp|location=Sequence derived from alignment at P-littoralis_Contig654:132401..137009+ (Pylaiella littoralis U1_48)
GTATAATGTCTGGTGTGATGTTCCAGGCACCCTTGTGCCCTACACTTCGC GTTGTTCAACCTCTCGACCAGGAAATGAAAGACGCAATACGCCGCGTACA TTGGTGGGTTTAGCAACTTCTCATAAAGCGATTGATTAGCAAAAGGAGAA CGTGGTTTCAACCTCCAACGTACATGTTACACCCAGCAAAGAGAGGGCAC GAGCGAGAAGGGCTGCTGGGAGGTCTGAGCTGCTGCGGCTGCTGCGGCTG CTGGTGTTTCGTGTTGTCGGCCGATCTGGCTGTATCCTCTTTGGTGTGTT TGTTGACGTATTGACGTCTGTTTATTCGTCTCGTTGATTGAAAACCACAG CCGTTGTTTTTCATGCTGCTGGCTTCAGCTTCCCGAGTGATCATCTGCTG CGGCGCTTTGGGCTTTCGTTCCTCGTCCCACTGGACGGGGCACTGCGGAA GGCATACTTCCCTTATCCACCTAGAGACAAGCAGAGAAGACGCACAAGGA CGACAGCGAGGTCGAAAAGGGGTGAGGGAGTGCGTATTGAAATATTCACC TCCAGCAGCAGAAGCATCAGCATCAACAGCAGCAACAGCCTTGGAAGACC GAGGGGCATGCGATGTGGCGGAGGATGAAGTTGCTGTCAAGAATCGGACT GGGAGGAGCTCGTCACGGTTGGATCTCTCTGTCGATCCAGCACAACCGTC GCCTCCCTTGGACGTTCTCCACGAAAACCAAGACTTCGGGTGAGTGCTGT TGCTGCTCCTTCCACTGCTTGAGATGAAAATAACACGAAAGATCACATGT GTACCTGGTGTATACCAGGTAAGGTGGAACGGATTGACTGTCCGATTCCA CGTCGGCGATCGGCATAAGACACCTCCGGAGGATGTGCACAGGTGGAGAG TACGGTCAAAAGCAGTACTTGCAGTTGACGCAGTTGCGGAAAGCTCGCTG AGAGATTCATCCCACTTGCTTCGTTGATTCTCCCAGAATTGGATACTACC GGCCAGTGAACAGACCTGCACAAGTGTTACAGGTACACACGTGCCACCAG TGAACAGACCTGCACAAGTGTTACAGGTATACACGTGCCTACGATTGACT CTATATTTCTGTTTGGAGGTGGACACACTCTTCTTGGACATGCCTTAACC CTCTTACCCCTAGGTAGCCAAATGTCGCCATTTTGGGTCGCCATTTTGTT ATTGGTCACTTGGAATATCACGTGACTCCCAATAGCTAAACTTTTACCTC GCTAACCGCTCAATTCTCAAACGCTCTCTATAAGCAAGAGAGCGCGTCGC CATTTTTTGGCGACGCACTCACTTGCTTTTATAGAGCTTTTGTTAAGTAA AATTGTTCCATGATTTTTTACGGGGGGGTAAAAGGGTTAAAGTCAGTACA AGCATGCGTAAGTAGGTTTCCACTAGACAAGCTTCAACTTCAGAAGCACG GGTGCCCGACCCTTACTACTAACCTTAGCTGCAATCCCAACCCCCAAGAG AGGTGGACAGCTTGGTTGCTGTGCCTTGGGAAGGTTTCAGGTCGCTGTTT AGGTCGCTGTCGCCGTGAAAACGTTGTACGGGCGGTAAACCTGCTGTGCA AAAGAGGGATTTATGGCACGAAGTTTTCTGATTTGTCAAAAGGGACATAG TCGAAAAAAAAACGAGCTGACCGACCGAAGATCCTTGGATGACGGTCGGT GTCATGCAGGATTGTTCCGGTGGATACACGTCTGGCCCCCTCTGCGACGG GAACTCTCATGCTGTGTACACCCTCTTTCCCTCATCGTCTCCCCTGTTGC CATTTTTTTCATGTTGCTTGGGTCGGCGTTTTGGCTGTCGGCTACATGGC ACTTCTCCCGCCACGCCTTCATCTGTTGGGTGGTGCAGCGCGGTTTGTAA GCCACCGCTGATGCACGTCCATCGTCCTGAGTTCGGCTCCAAAGACAAGG AGTTCGTCCTGCAAAAGGGTGAGCGGCTAGGTGCAACGTGGAGACAGCGC GATTACAAAAATAAACGACCCGTAAGCTGAACGGCTACAGGAACGTTTTG GAAGATTGTCCGTGCCCAAGTCAGTAGTGTCGTCCAACATGTTGGCCTGC TGATGGTCCTCCCTCATGTACCGAGTACCGCGGCTCTACGCGGCCGTTGG CTTGGATTAAGCTCTTCTCTACGGTATGTTGTTCTTCTACGCCGCCTCGT TCTTGTGCTCGTTATTCAGCTCGGAACCAGCTTGGGCGCCGTATTTATCT TCCGCACCGGTTGGACCGTGGCACGTCCGGGTGCCTGCTGGTGGGCTTCA GCCCGGAGTCAGTTAAGGTGCGGCGCAGCACGAGCTAGTTGTGCTGCTCT GGTCTCCAAGAGGAAGCCCGTCTTTACAGTATCCCAATGCATCAGTTTTC CCCTGTGGTTGCATGCTCTGTGGTGCCGTACCATATATTTTCTGCCAGAT TTCGAGATAGCACTTTCAAATGTCATTTCCAACCAGCCCGTTTCGCAAGA CAACCGCCAGTATACAACGGTTCTTAAGGGACCAAGCGCAATTCCGCGTG TTCATGACGGGACGATTGATGAACAGGTACTTCACGAAGCGCTCTCCCAC CCGACTTCCACCAAGACGTATGTGGCGATCGTTAGGGGAAGCGGGCAGGC GTTTGTCGACAGAGGTTGGTTCACGGTAAGATGTTGCTTTTTTGCCGCCG GCGACACACACCAACAATGACAGCAAAGCGTATCTACCATCGTCTACGGC GTTTTCTGGTTTCAAATTTTGAAGGGGCCGGCATTTGAAATCCATATGTT CCTCCATCGAGGTCACAGCATTGTCTGATCCGGATGGACATAAGGGTGAA GATTTCACCTATATTTCGGATGAAAAATAATTACAGTCTTTGCAGGCAGA GGTAGCTCTTCAGTGGTTAGACCCTCAATTTTGCCAGTAACTTTTTGCAC GTACAGGTGGATCGGCCCATGAAGGACGACAAGAAAGTTTTGAGAGAGGC GTCTACGCGCTTCTTGTTTGTCAGGGGAGGAGATTGTCCTGACCCCAGGT GCTGCCTCGTGCTTGCGCAGCCTTCCACTGGACGGTAAGTGAATACCTTG CTTTACGTTCGTTTGTTTCTTGTATACTTCACGTCGTGTTTGGAAAAGAG ATGCTCTTTCGCCGCCACCGAAGAAGTAATGTAGAATTTTTCGGCAGCGT GGAGACGAGATTCAACTTCCACCCTCTTGTCAAGTATCCCGCCTTTAGGC CCCGAGTGCATGCCTCTGGTGGGTGGACCCTCATAACGCCAATGTGTCTC TCTACTGTACACGAAAATCATTTTGTTCCTCATCACACAAGGTTTCATCA GATCAGACGGCATCTGAGGGGACTAAGCCATCCCGTCGTGGGCGACTCCG TGCATGGAAATAGCCGGTTTAACCGGGAAGTGGTCAGTCACCCCAGCAAC GCAGCGCCTGCCGGCCGGCTGATGCTGCACTGCCTGCAGCTCTTTCTACC GAAGCTGCCGGATGCGAGGTCAAGGGTATGGAAAAAAAGCGCAGAAAAAA CAGTAGCAGCGGAGGGAGAGCAGATGGAGGAAGTCTACCGCGGAAGTAGG GACAAGTCAGAGAAGACCCGCCTCGTGCAAAAGGACAAAGGGGAACCGGG TAGGGCGAGCTGCAGCGGTAGCGGCAGCGAACAGGAAGGAATGGGTGTCA GCAACGTGACGGGATCTTTTTCAGTTTCGGGCGGAGCTCAGACTCCAGCG CAATCCGAGAAACAGTTTGCCCACAACGACGATGGTGTTGCTGATAGGAA AACAATGATGGACGGACAAGAGGGGGGAGGCCTGGAGGTATACGCGGAGC CGCCGGGTGATATGATGGCCTTCTTGCGAGGCATGTCTTGGTGGGAGGAG GGTATGATCCAGGCGGCAGAGCGTAGCGGACGGTGACCACCACGTTTGTG TCAGCAGCGTGACGGTGATCTTTTTCAGTTTCGGGCGGAGCTCGGACTCC AGCGCAATCCGAGAAACACATTTCTCACAAGGACGATCATGTTGCTGATG GGAAAGCAATGATAGACGGACTCGAGGGGAGAGGACTGGAGGTGAACGCT AAGCTGCCGGGTGACGTGACGGCCTTCTTGCGAGGCATGTCTTGGTGCGA GGAGGGTATGATCCAGGCGGTAGAACGTAGCGGACGGCGCCCCTCACCAC CACCACATTAGCGACATTAACACTGGACTCTAGTCGCCATCCTGTAGACT ATTCCCTACGTCCCACTGATGCGAGTATACGCAGGTTGTATTGGTTGACA CTTGCGATTTTTTCACTGATGCTTTTGGACTGCAACTGTTTCGCAAGAGG TATGGTATTATTTAGATCGGATTTGAGGCCAATTGGGGACATTTTGGGCC CAAACAATGATACACAGCCTGTTCGCCTTGTGCCGCACTTTCCTCCCGGA TCCGACACTCTCGTTGATTCCATCTACACCGTATGCAACCGTTTTCCGTC ATCGTCAAACGAAGCCCATCACCGCCTTCATTGGTTCACCATGATTCCCA CCTTCAAGTAGCCCGGAACGCAGATGAAATTTATGGGTGCCGGTACTCTT CCCATGTTG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig654:132401..137009+

>mRNA_P-littoralis_Contig654.33.3 ID=mRNA_P-littoralis_Contig654.33.3|Name=mRNA_P-littoralis_Contig654.33.3|organism=Pylaiella littoralis U1_48|type=CDS|length=1398bp|location=Sequence derived from alignment at P-littoralis_Contig654:132401..137009+ (Pylaiella littoralis U1_48)
ATGCTGCTGGCTTCAGCTTCCCGAGTGATCATCTGCTGCGGCGCTTTGGG
CTTTCGTTCCTCGTCCCACTGGACGGGGCACTGCGGAAGGCATACTTCCC
TTATCCACCTAGAGACAAGCAGAGAAGACGCACAAGGACGACAGCGAGGT
CGAAAAGGGGTGAGGGAGTGCGTATTGAAATATTCACCTCCAGCAGCAGA
AGCATCAGCATCAACAGCAGCAACAGCCTTGGAAGACCGAGGGGCATGCG
ATGTGGCGGAGGATGAAGTTGCTGTCAAGAATCGGACTGGGAGGAGCTCG
TCACGGTTGGATCTCTCTGTCGATCCAGCACAACCGTCGCCTCCCTTGGA
CGTTCTCCACGAAAACCAAGACTTCGGCGCGGTTTGTAAGCCACCGCTGA
TGCACGTCCATCGTCCTGAGTTCGGCTCCAAAGACAAGGAGTTCGTCCTG
CAAAAGGCTCGGAACCAGCTTGGGCGCCGTATTTATCTTCCGCACCGGTT
GGACCGTGGCACGTCCGGGTGCCTGCTGGTGGGCTTCAGCCCGGAGTCAG
TTAAGGTACTTCACGAAGCGCTCTCCCACCCGACTTCCACCAAGACGTAT
GTGGCGATCGTTAGGGGAAGCGGGCAGGCGTTTGTCGACAGAGGTTGGTT
CACGGTGGATCGGCCCATGAAGGACGACAAGAAAGTTTTGAGAGAGGCGT
CTACGCGCTTCTTGTTTGTCAGGGGAGGAGATTGTCCTGACCCCAGGTGC
TGCCTCGTGCTTGCGCAGCCTTCCACTGGACGGTTTCATCAGATCAGACG
GCATCTGAGGGGACTAAGCCATCCCGTCGTGGGCGACTCCGTGCATGGAA
ATAGCCGGTTTAACCGGGAAGTGGTCAGTCACCCCAGCAACGCAGCGCCT
GCCGGCCGGCTGATGCTGCACTGCCTGCAGCTCTTTCTACCGAAGCTGCC
GGATGCGAGGTCAAGGGTATGGAAAAAAAGCGCAGAAAAAACAGTAGCAG
CGGAGGGAGAGCAGATGGAGGAAGTCTACCGCGGAAGTAGGGACAAGTCA
GAGAAGACCCGCCTCGTGCAAAAGGACAAAGGGGAACCGGGTAGGGCGAG
CTGCAGCGGTAGCGGCAGCGAACAGGAAGGAATGGGTGTCAGCAACGTGA
CGGGATCTTTTTCAGTTTCGGGCGGAGCTCAGACTCCAGCGCAATCCGAG
AAACAGTTTGCCCACAACGACGATGGTGTTGCTGATAGGAAAACAATGAT
GGACGGACAAGAGGGGGGAGGCCTGGAGGTATACGCGGAGCCGCCGGGTG
ATATGATGGCCTTCTTGCGAGGCATGTCTTGGTGGGAGGAGGGTATGATC
CAGGCGGTAGAACGTAGCGGACGGCGCCCCTCACCACCACCACATTAG
back to top