mRNA_P-littoralis_Contig654.33.3 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig654.33.3 vs. uniprot
Match: A0A6H5L7K6_9PHAE (PseudoU_synth_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L7K6_9PHAE) HSP 1 Score: 378 bits (971), Expect = 5.710e-120 Identity = 207/398 (52.01%), Postives = 253/398 (63.57%), Query Frame = 3
Query: 693 QPSPPLDVLHENQDFGAVCKPPLMHVHRPEFGSKDKEFVLQKARNQLGRRIYLPHRLDRGTSGCLLVGFSPESVKVLHEALSHPTSTKTYVAIVRGSGQAFVDRGWFTVDRPMKDDKKVLREASTRFLFVRGGDCPDPRCCLVLAQPSTGRFHQIRRHLRGLSHPVVGDSVHGNSRFNREVVSHPSNAAPAGRLMLHCLQLFLPKLPDARSRVWKKSAEKTVAAEGEQMEEVYRGSRDKSEKTRLVQ--KDKGE-PGRASCSGSGSEQEGMGVSNVTGSFSVSGGAQTPAQSEKQFAHNDDGVADRKTMMD-----------------------------------------------GQEGG--------GLEVYAEPPGDMMAFLRGMSWWEEGMI 1712
Q SPPL+VLH+N+ F V KPP MH HRPEFGS+D +FV+QKAR+QLGRR++LPHRLDR TSGCLLVGFS + KVLH+ L+ P S+KTY+AIVRGSG AFV +GWFTVDRP+KD+KK+LREASTRFLFVRGG+ PDPRCC VLAQPSTGRFHQIRRHL GLSHP+VGDSVHG+ RFNREV H N+APAGRLMLHCL+L LP LPD S+ K + + ++ + + M Y GS+ KSE+ + +++GE P R G G+ G+ S SVS Q P ++EK ++ D ++ D G +G G VYAEPP DMM FLRGMSWWEEG+
Sbjct: 127 QQSPPLEVLHQNEHFAVVSKPPGMHCHRPEFGSRDPDFVMQKARDQLGRRVFLPHRLDRATSGCLLVGFSSHAAKVLHQTLAQPDSSKTYLAIVRGSGSAFVGKGWFTVDRPIKDEKKILREASTRFLFVRGGNDPDPRCCFVLAQPSTGRFHQIRRHLNGLSHPIVGDSVHGDCRFNREVAGH-RNSAPAGRLMLHCLRLSLPTLPDVGSQALKSATGRILSPDKDTMTNDYCGSKRKSERGHNARAGQERGERPSRKREDGHGNTT-GVDGREARASGSVSEEVQGPVETEKAASNTGDPYPKPRSEFDSARTPPASAPRQEISTEPFVPTLAEISAAISPSVGKKESSTRGCRPRGIDGEAQEDLVEEGFHVYAEPPDDMMEFLRGMSWWEEGLF 522
BLAST of mRNA_P-littoralis_Contig654.33.3 vs. uniprot
Match: A0A7S2LAN5_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LAN5_9STRA) HSP 1 Score: 182 bits (461), Expect = 3.700e-48 Identity = 104/232 (44.83%), Postives = 137/232 (59.05%), Query Frame = 3
Query: 654 RSSSRLDLSVDPAQPSPPLDVLHENQDFGAVCKPPLMHVHRPEF-GSKDKEF-VLQKARNQLGRRIYLPHRLDRGTSGCLLVGFSPES-------VKVLHEALSHPTSTKTYVAIVRGSG----QAFVDRGWFTVDRPMKDDKKVLREASTRFLFVRGGDCPDP--RCCLVLAQPSTGRFHQIRRHLRGLSHPVVGDSVHGNSRFNREVVSHPSNAAPAGRLMLHCLQLFLP 1304
RSSS +S + P +++L KPP + H ++ G K+ E +LQ+ R+ +GRR+ L HRLDRG SGCLL + E+ KVL +AL P +TKTYVAIVRG G + F +GWF +DRP+KD+ + A T F FV G + + R LVLA+PSTGR+HQIRRHL GLSHP++GDS HGNSR NRE P R+ LH ++ LP
Sbjct: 37 RSSSSSSVSFEEINPINLVEILSRGPHHAIANKPPSVKCHNSDWTGPKNNEVAMLQRVRDTIGRRVNLIHRLDRGASGCLLASHAEENCDELRECTKVLSDALQSPLATKTYVAIVRGEGILKDEDFKGKGWFHIDRPIKDENGIENGAKTAFRFVAGVNRANDGVRASLVLARPSTGRWHQIRRHLNGLSHPILGDSTHGNSRTNRE---WRDRGLPGERICLHLARIQLP 265
BLAST of mRNA_P-littoralis_Contig654.33.3 vs. uniprot
Match: A0A7S3ZM53_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZM53_9STRA) HSP 1 Score: 171 bits (432), Expect = 2.990e-44 Identity = 102/227 (44.93%), Postives = 129/227 (56.83%), Query Frame = 3
Query: 693 QPSPPLDVLHENQDFGAVCKPPLMHVHRPEFGSKDKEF-VLQKARNQLGRRIYLPHRLDRGTSGCLLVGFSP-----ESVKVLHEALSHPTSTKTYVAIVRGSG--------QAFVD--------RGWFTVDRPMKDDKKVLREASTRFLFVRGGDCPDP-RCCLVLAQPSTGRFHQIRRHLRGLSHPVVGDSVHGNSRFNREVVSHPSNAAPAGRLMLHCLQLFLP 1304
+P PPL++L+E F V KP + H E+ KD +LQ+AR+ LGRR+ L HRLDRG SGC++ ++ E L EAL+ KTYVA+VRG G +A D GWF VDRP+KDD+ A+T F FV D R LV A+P+TGR+HQIRRHL GLSHP++GDS HGNSR NRE P RL LH ++ LP
Sbjct: 37 EPPPPLEILYEGDTFAIVAKPGGVPSHASEYIGKDYVVPLLQRARDALGRRVNLVHRLDRGASGCVICAYADLDDAAEVTTALGEALA--AGQKTYVALVRGEGFLREDLLEKAGADVPSGDLKREGWFVVDRPIKDDRGRENNATTTFKFVASTGSEDAARASLVAARPATGRWHQIRRHLNGLSHPILGDSSHGNSRTNREW--RKERDLPGARLCLHLCRISLP 259
BLAST of mRNA_P-littoralis_Contig654.33.3 vs. uniprot
Match: A0A7S1FQ02_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FQ02_9STRA) HSP 1 Score: 169 bits (429), Expect = 3.130e-43 Identity = 98/238 (41.18%), Postives = 135/238 (56.72%), Query Frame = 3
Query: 723 ENQDFGAVCKPPLMHVHRPEF-------GSKDKEFVLQKARNQLGRRIYLPHRLDRGTSGCLLVGFSPES------------------------VKVLHEALSHPTSTKTYVAIVRGS----GQAFVDRGWFTVDRPMKDDKKVLREASTRFLFVRG--GDCPDPRCCLVLAQPSTGRFHQIRRHLRGLSHPVVGDSVHGNSRFNREVVSHPSNAAPAGRLMLHCLQLFLPKLPDARS 1325
++ + V KPP + HR ++ G+ + ++Q+ R+Q+GRR+ L HRLDRG SGCLL+ F+ +S + L +L+ + KTYVA+VRG G+ RGWF VDRP++D + V REA T+F FV G DC R +VLA+P TGR+HQIRRHL GLSHP++GDS HGNSR NRE S P RL LH ++ LP L ++ +
Sbjct: 74 DSSTYLVVAKPPAVACHRSDYIGRKAPDGTPEPPAMVQRIRDQVGRRVNLIHRLDRGASGCLLLAFAGDSRGEDEDGKDGEGGGEDSAERYRDTTRRLIASLADDRAVKTYVALVRGGPFLHGEDLRRRGWFAVDRPIRDARGVEREALTQFRFVAGTDDDCA-ARASIVLARPRTGRWHQIRRHLNGLSHPILGDSTHGNSRINREWRS--KRGLPGQRLCLHLAKMSLPSLENSET 308
BLAST of mRNA_P-littoralis_Contig654.33.3 vs. uniprot
Match: A0A1Z5J6G5_FISSO (PseudoU_synth_2 domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J6G5_FISSO) HSP 1 Score: 166 bits (421), Expect = 1.890e-42 Identity = 90/185 (48.65%), Postives = 124/185 (67.03%), Query Frame = 3
Query: 708 LDVLHENQDFGAVCKPPLMHVHRPEF-GSKDKEFV--LQKARNQLGRRIYLPHRLDRGTSGCLLVGFSPES-VKVLHEALSHPTSTKTYVAIVRGSG----QAFVDRGWFTVDRPMKDDKKVLREASTRFLFVRGGDCPD--PRCCLVLAQPSTGRFHQIRRHLRGLSHPVVGDSVHGNSRFNRE 1232
+ +L ++ D+ V KPP + H ++ GS+ ++ + LQ+ R +G RI L HRLDRG SGCLLV + + L +A++ +TKTY+AIVRG G + ++GWF VDRP+K+++ VL EAST F FV G D PR LVLA+P TGR+HQIRRHL GLSHP++GDS HGNS+ N+E
Sbjct: 58 ITILAKSDDYLVVDKPPSVVCHHSDWTGSRSQQEIPMLQRVRQAVGSRINLVHRLDRGCSGCLLVTYQKDGKTATLSQAMAE-NATKTYIAIVRGEGILRGEDLKEKGWFLVDRPIKNERGVLHEASTWFRFVAGQPEVDGQPRASLVLARPMTGRWHQIRRHLNGLSHPILGDSSHGNSKVNQE 241
BLAST of mRNA_P-littoralis_Contig654.33.3 vs. uniprot
Match: A0A1Z5K7F0_FISSO (PseudoU_synth_2 domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K7F0_FISSO) HSP 1 Score: 161 bits (407), Expect = 1.750e-40 Identity = 97/221 (43.89%), Postives = 133/221 (60.18%), Query Frame = 3
Query: 708 LDVLHENQDFGAVCKPPLMHVHRPEF-GSKDKEFV--LQKARNQLGRRIYLPHRLDRGTSGCLLVGFSPES---VKVLHEALSHPTSTKTYVAIVRGSG----QAFVDRGWFTVDRPMKDDKKVLREASTRFLFVRGGDCPD--PRCCLVLAQPSTGRFHQIRRHLRGLSHPVVGDSVHGNSRFNREVVSHPSNAAPAGRLMLHCLQLFLPKLP-DARSRV 1331
+ ++ ++ D+ V KPP + H E+ GS+ ++ + LQ+ R +G RI L HRLDR SGCLLV + + + +A++ +TKTY+A+VRG G + +GWF VDRP+K+++ VL EAST F FV G D PR LVLA+P TGR+HQIRRHL GLSHP++GDS HGNS+ N+E S L L LQL DARS +
Sbjct: 54 ITIVAKSDDYLVVDKPPSVVCHHSEWTGSRSQQEIPMLQRVRQAVGSRINLVHRLDRVCSGCLLVTYQKDDGDMTAIFSQAMAE-NATKTYIALVRGEGILHGEDLKQKGWFLVDRPIKNERGVLHEASTWFRFVAGQPEVDGQPRASLVLARPRTGRWHQIRRHLNGLSHPILGDSSHGNSKVNQEWRSQRGMLPERTCLHLARLQLSTETFQIDARSNL 273
BLAST of mRNA_P-littoralis_Contig654.33.3 vs. uniprot
Match: B7FYH0_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FYH0_PHATC) HSP 1 Score: 152 bits (384), Expect = 1.720e-37 Identity = 91/220 (41.36%), Postives = 121/220 (55.00%), Query Frame = 3
Query: 714 VLHENQDFGAVCKPPLMHVHRPEF-GSKDKEF---VLQKARNQLGRR-IYLPHRLDRGTSGCLLVGFS----------PESVKVLHEALSHPTSTKTYVAIVRGSG----QAFVDRGWFTVDRPMKDDKKVLREASTRFLFVRGGD-----CPDPRCCLVLAQPSTGRFHQIRRHLRGLSHPVVGDSVHGNSRFNREVVSHPSNAAPAGRLMLHCLQLFL 1301
+L + V KPP + H E+ GS+ F +LQ+ R +G + L HRL+ G SGCLL+ ++ P + L ++ S KTY+A+VRG G + F GWF VDRP+K++K +L A+T F FV G D PR LVLA+P TGR+HQIRRHL GLSHP++GD+ HGNS NRE PA R LH +L L
Sbjct: 91 ILARTDRYVVVAKPPTVVCHHSEWTGSRSDPFQIPMLQRTREAMGGNCVNLVHRLNWGCSGCLLLTYAADTADAEIYIPNTTATLIASMKETASLKTYLALVRGEGLLQGRDFKQEGWFKVDRPIKNEKGILNNATTWFRFVAGQDNDSGRINQPRASLVLARPETGRWHQIRRHLNGLSHPILGDTSHGNSHVNREW--RDLRGMPAQRTCLHLARLQL 308
BLAST of mRNA_P-littoralis_Contig654.33.3 vs. uniprot
Match: A0A1E7F626_9STRA (Pseudouridine synthase (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F626_9STRA) HSP 1 Score: 149 bits (377), Expect = 2.300e-37 Identity = 88/228 (38.60%), Postives = 128/228 (56.14%), Query Frame = 3
Query: 708 LDVLHENQDFGAVCKPPLMHVHRPEFG---SKDKEFV--------LQKARNQLGRRIYLPHRLDRGTSGCLLVGFSPE------SVKVLHEALSHPTST-----KTYVAIVRGSG----QAFVDRGWFTVDRPMKDDKKVLREASTRFLFVRG---GDCPDPRCCLVLAQPSTGRFHQIRRHLRGLSHPVVGDSVHGNSRFNREVVSHPSNAAPAGRLMLHCLQLFLP 1304
+ +L + V KP + HR ++ ++ KE + LQ+ R +G ++ L HRLDRG SGCLL F+ + ++ E +++ +S+ KTY+AIVRG G + F GWF VDRP+KD+ L+ A++ F F+ G G+ PR LVLA+ TGR+HQIR+HL GLSHP++GDS HG S+ NRE + R+ LH L+L LP
Sbjct: 12 VSILDRGDNHVVVSKPSAVICHRSDWTGRRNRKKESIITSEEVPMLQRVREAVGEKVNLVHRLDRGASGCLLFSFAKSDKDGGNATAIMQECMTNDSSSTSDTHKTYIAIVRGEGLLKGRDFRQEGWFEVDRPIKDESGNLKNATSYFRFIAGQDDGNGTRPRASLVLARIKTGRWHQIRKHLNGLSHPIIGDSTHGISKTNREWIEKWD--LKRERICLHLLKLELP 237
BLAST of mRNA_P-littoralis_Contig654.33.3 vs. uniprot
Match: A0A448Z1P7_9STRA (PseudoU_synth_2 domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z1P7_9STRA) HSP 1 Score: 154 bits (388), Expect = 2.580e-37 Identity = 92/230 (40.00%), Postives = 128/230 (55.65%), Query Frame = 3
Query: 708 LDVLHENQDFGAVCKPPLMHVHRPEFGSKDKEF-----------VLQKARNQLGRRIYLPHRLDRGTSGCLLVGFSPE------SVKVLHEALSHPTST-KTYVAIVRGSG----QAFVDRGWFTVDRPMKDDKKVLREASTRFLFVRG-----GDCPD-PRCCLVLAQPSTGRFHQIRRHLRGLSHPVVGDSVHGNSRFNREVVSHPSNAAPAGRLMLHCLQLFLPKLP 1313
+ +L + V KPP + HR ++ K+ +LQ+AR +G R+ L HRLDRG SGCLL+ F+ + VL E+++ +S+ KTY+A+VRG G + F GWF V RP+K++ L+ A++ F F+ G G D PR LVLA+ TGR+HQIR+HL GLSHP++GDS HGNS+ NRE R LH L+L LP P
Sbjct: 97 VSILDRGPNHLVVSKPPSVLCHRSDWSGSGKKRSAKQRGPPEVPMLQRAREAVGERVNLVHRLDRGASGCLLMSFAGSDENGGNATAVLQESMTRTSSSHKTYLALVRGEGILKGRDFRQEGWFEVSRPIKNEAGTLKNATSYFRFIAGQGNENGALEDVPRASLVLARIKTGRWHQIRKHLNGLSHPIIGDSTHGNSKTNREW--RQKWGLEPERTCLHLLKLELPATP 324
BLAST of mRNA_P-littoralis_Contig654.33.3 vs. uniprot
Match: A0A6S8CJW7_9STRA (Hypothetical protein n=2 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A6S8CJW7_9STRA) HSP 1 Score: 149 bits (377), Expect = 9.690e-37 Identity = 94/219 (42.92%), Postives = 126/219 (57.53%), Query Frame = 3
Query: 702 PPLDVLHENQDFGAVCKPPLMHVHR-PEFGSKDKEF----VLQKARNQLGRRIYLPHRLDRGTSGCLLVGF-----SPESV-KVLHEALSHPTSTKTYVAIVRGS----GQAFVDRG-WFTVDRPMKDDKKVLREASTRFLFVR-GGDCPDPRCCLVLAQPS-TGRFHQIRRHLRGLSHPVVGDSVHGNSRFNREVVSHPSNAAPAGRLMLHCLQLFLP 1304
P + VL+ V KPP + VH P G K+ +LQ+AR+ LG RI L HRLDRG SGC+L P+++ LHEAL K YVA+VRG+ GQ+ D WF ++RP+KD + + +A T F F+ RC LVLA+P +GR+HQIRRHL GLSHP++GDS HGNS+ NR H PA R++LH ++ +P
Sbjct: 20 PVVQVLYRKNAVAVVAKPPSVPVHASPYVGGTIKKIEEKPLLQRARDALGSRINLVHRLDRGASGCVLCVCIDRCREPQTLTSELHEALR--VGRKRYVALVRGTRVFKGQSLGDNHTWFDIERPIKDSRGKINDARTSFRFLGYANHLNSDRCSLVLAEPQRSGRWHQIRRHLNGLSHPIIGDSSHGNSQTNRFWREH--RGLPAERILLHLARIQIP 234 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig654.33.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig654.33.3 >prot_P-littoralis_Contig654.33.3 ID=prot_P-littoralis_Contig654.33.3|Name=mRNA_P-littoralis_Contig654.33.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=466bp MLLASASRVIICCGALGFRSSSHWTGHCGRHTSLIHLETSREDAQGRQRGback to top mRNA from alignment at P-littoralis_Contig654:132401..137009+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig654.33.3 ID=mRNA_P-littoralis_Contig654.33.3|Name=mRNA_P-littoralis_Contig654.33.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=4609bp|location=Sequence derived from alignment at P-littoralis_Contig654:132401..137009+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig654:132401..137009+ >mRNA_P-littoralis_Contig654.33.3 ID=mRNA_P-littoralis_Contig654.33.3|Name=mRNA_P-littoralis_Contig654.33.3|organism=Pylaiella littoralis U1_48|type=CDS|length=1398bp|location=Sequence derived from alignment at P-littoralis_Contig654:132401..137009+ (Pylaiella littoralis U1_48)back to top |