mRNA_P-littoralis_Contig654.22.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig654.22.1
Unique NamemRNA_P-littoralis_Contig654.22.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig654.22.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig654contigP-littoralis_Contig654:84835..85240 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size406
Hectar predicted targeting categoryother localisation
Exons1
Cds size339
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791365.9713173-UTR-P-littoralis_Contig654:84834..848761680791365.9713173-UTR-P-littoralis_Contig654:84834..84876Pylaiella littoralis U1_48UTRP-littoralis_Contig654 84835..84876 +
1680791365.9976473-UTR-P-littoralis_Contig654:85215..852401680791365.9976473-UTR-P-littoralis_Contig654:85215..85240Pylaiella littoralis U1_48UTRP-littoralis_Contig654 85216..85240 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791365.9859273-CDS-P-littoralis_Contig654:84876..852151680791365.9859273-CDS-P-littoralis_Contig654:84876..85215Pylaiella littoralis U1_48CDSP-littoralis_Contig654 84877..85215 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig654.22.1prot_P-littoralis_Contig654.22.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig654 84877..85215 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig654.22.1

>prot_P-littoralis_Contig654.22.1 ID=prot_P-littoralis_Contig654.22.1|Name=mRNA_P-littoralis_Contig654.22.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=113bp
MLYITSKYVEVFSQNESGVNVKISHSKSQRGQVHEGPPNAFSQWYRLKCW
GGPSPRNTKEIEYTGVWRGPLFLAGPTTCPLHIYFGLNTLFRCKPTTPFI
AIWPHSVRSPAR*
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mRNA from alignment at P-littoralis_Contig654:84835..85240+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig654.22.1 ID=mRNA_P-littoralis_Contig654.22.1|Name=mRNA_P-littoralis_Contig654.22.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=406bp|location=Sequence derived from alignment at P-littoralis_Contig654:84835..85240+ (Pylaiella littoralis U1_48)
ACCAATTTCTGAAGGTTAAACAATGCCCATTGGTGGGTTCGCATGCTTTA
TATTACTTCGAAGTACGTCGAAGTTTTCAGCCAGAATGAATCGGGCGTTA
ATGTAAAAATATCCCACAGCAAGTCACAGAGGGGTCAGGTGCATGAAGGT
CCTCCTAACGCCTTCTCGCAATGGTACCGGTTAAAATGTTGGGGCGGCCC
TTCGCCACGGAATACCAAAGAAATCGAATACACGGGTGTATGGAGAGGAC
CGCTTTTTCTGGCGGGACCAACAACCTGCCCCCTACATATATATTTCGGT
TTGAATACTCTTTTTCGGTGCAAACCCACAACCCCTTTTATCGCCATTTG
GCCGCACTCTGTGAGATCACCTGCGCGATAATTCTTCCGGACACGAATCG
AGCTCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig654:84835..85240+

>mRNA_P-littoralis_Contig654.22.1 ID=mRNA_P-littoralis_Contig654.22.1|Name=mRNA_P-littoralis_Contig654.22.1|organism=Pylaiella littoralis U1_48|type=CDS|length=339bp|location=Sequence derived from alignment at P-littoralis_Contig654:84835..85240+ (Pylaiella littoralis U1_48)
ATGCTTTATATTACTTCGAAGTACGTCGAAGTTTTCAGCCAGAATGAATC
GGGCGTTAATGTAAAAATATCCCACAGCAAGTCACAGAGGGGTCAGGTGC
ATGAAGGTCCTCCTAACGCCTTCTCGCAATGGTACCGGTTAAAATGTTGG
GGCGGCCCTTCGCCACGGAATACCAAAGAAATCGAATACACGGGTGTATG
GAGAGGACCGCTTTTTCTGGCGGGACCAACAACCTGCCCCCTACATATAT
ATTTCGGTTTGAATACTCTTTTTCGGTGCAAACCCACAACCCCTTTTATC
GCCATTTGGCCGCACTCTGTGAGATCACCTGCGCGATAA
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