mRNA_P-littoralis_Contig654.18.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig654.18.1
Unique NamemRNA_P-littoralis_Contig654.18.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig654.18.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig654contigP-littoralis_Contig654:70884..74722 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G985
Model size3070
Max annot lvl2880.D7G985|-
Hectar predicted targeting categoryother localisation
Exons2
Evalue7.54e-05
EggNOG OGs29ZCP@1|root,2RXW0@2759|Eukaryota
Cds size1611
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791365.8628361-UTR-P-littoralis_Contig654:70883..720141680791365.8628361-UTR-P-littoralis_Contig654:70883..72014Pylaiella littoralis U1_48UTRP-littoralis_Contig654 70884..72014 -
1680791365.9367888-UTR-P-littoralis_Contig654:74394..747221680791365.9367888-UTR-P-littoralis_Contig654:74394..74722Pylaiella littoralis U1_48UTRP-littoralis_Contig654 74395..74722 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791365.876858-CDS-P-littoralis_Contig654:72014..720631680791365.876858-CDS-P-littoralis_Contig654:72014..72063Pylaiella littoralis U1_48CDSP-littoralis_Contig654 72015..72063 -
1680791365.9117622-CDS-P-littoralis_Contig654:72832..743941680791365.9117622-CDS-P-littoralis_Contig654:72832..74394Pylaiella littoralis U1_48CDSP-littoralis_Contig654 72833..74394 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig654.18.1prot_P-littoralis_Contig654.18.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig654 72015..74394 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig654.18.1

>prot_P-littoralis_Contig654.18.1 ID=prot_P-littoralis_Contig654.18.1|Name=mRNA_P-littoralis_Contig654.18.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=537bp
MVDVVKKRCTHRDCVKQPSYGEKGTKAAEFCFGHAKDGMVKVVSKRCTYR
DCTKQPVYGVEGTKTAEFCVEHAKDGMVNIKDKRCTHHSCTKHPTYGVEG
MKAAKFCSEHAEDGMVNIKHKRCTHHGCAKHPSYGVPGTRKTEVCSEHAK
DGMVNLKDKRCTHRGCTVRPSYGLEGTKMAEFCSRHAKDGMVNIKDKRCA
HRGCTKQPSYAAAGSKTADYCFGHSKDGMVNVVSKRCSHRGCIKRPSYGV
AGTKTPKYCSGHAKDGMVNVLPKRKRCLHRGCTKKASFGAAGTEAAEFCS
GHAKGGMVKVLSKRCARRGCITRPSYGVAGTNTALFCSIHAKSSMVEVSD
KTRTLPDCTTSPRFDVTGGIRTFCARHVEERTAAVAPATSTILPGVGGST
GGALGCGSVAPDGDTARRAGTGAKRRDRSTSSTQTGTCAGRSKVVSKRAR
QAPVHTPVTPYSLETAVVDESHTPVGDSSLSDSGDAAVKTELAAASKSDL
TRGQSFPSGSGSRRSSYLRRRSASSQEKQKASEGNA*
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mRNA from alignment at P-littoralis_Contig654:70884..74722-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig654.18.1 ID=mRNA_P-littoralis_Contig654.18.1|Name=mRNA_P-littoralis_Contig654.18.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3839bp|location=Sequence derived from alignment at P-littoralis_Contig654:70884..74722- (Pylaiella littoralis U1_48)
ATTACTCTTGTCATCTACGATTGGTCTATATGCTAACTTGCATCTAGCTG
TGGACCAAGTACAGCTACACTACTGCACCAGGTACCGGTTCGCCTGGCAA
GACGACAGACAGAAGAAGCGGGCCAGAAAGTCGCCTCACTTTCCGAGGGA
TCCGAAGCCTTCACACCCATAGACAGTTCGCTAGAGCAGTTAGTAGCCTC
GTCTCTTTTGCGCCAGGCAGGGAACAGGGACCGACAAGTATCGCCAACTT
GACAGCACCAAGCGGCCGAGCTTTGGTGCGGCAGGTGCCAAAACTGCACA
ATTCTGCTGTGGACAAGCAAAGGACGGGATGGTGGACGTCGTCAAGAAGA
GGTGCACCCACCGTGACTGCGTCAAGCAGCCAAGCTATGGTGAGAAGGGC
ACCAAGGCAGCGGAGTTCTGCTTTGGACACGCAAAGGACGGGATGGTGAA
GGTCGTCAGCAAGAGGTGCACCTACCGTGACTGCACAAAGCAGCCGGTGT
ACGGTGTGGAGGGTACCAAGACGGCGGAGTTCTGCGTTGAGCACGCTAAG
GACGGCATGGTTAACATCAAGGACAAGAGGTGCACCCACCATAGCTGCAC
CAAGCATCCGACCTACGGTGTGGAAGGTATGAAGGCGGCGAAATTTTGCT
CGGAACACGCCGAGGACGGGATGGTGAACATCAAGCACAAGAGGTGCACC
CACCATGGCTGCGCCAAGCATCCGAGCTATGGTGTGCCTGGTACCAGGAA
GACCGAAGTTTGCTCTGAACACGCCAAGGACGGTATGGTGAACTTGAAGG
ACAAGAGGTGCACCCACCGTGGCTGCACCGTTCGCCCAAGCTATGGTCTG
GAGGGTACCAAGATGGCGGAGTTCTGCTCTCGACACGCCAAGGACGGTAT
GGTGAACATCAAGGACAAGAGGTGCGCTCACCGTGGCTGCACCAAGCAGC
CGAGCTATGCTGCGGCTGGTAGCAAGACGGCAGATTACTGCTTTGGGCAC
TCCAAGGACGGTATGGTGAACGTCGTCAGCAAGAGGTGCTCCCATCGTGG
CTGCATTAAGCGGCCAAGCTATGGTGTGGCTGGTACCAAAACGCCAAAGT
ACTGCTCTGGACACGCAAAAGACGGAATGGTGAACGTTCTTCCTAAGAGG
AAGAGGTGTCTTCACCGTGGCTGCACCAAAAAGGCGAGTTTTGGTGCGGC
TGGTACCGAGGCGGCGGAATTCTGTTCTGGACACGCCAAGGGCGGAATGG
TGAAGGTCCTCAGCAAGAGGTGCGCCCGCCGTGGCTGCATCACACGGCCC
AGCTATGGTGTGGCTGGTACCAACACGGCGTTATTCTGCTCTATACACGC
CAAGAGCAGCATGGTGGAGGTCAGCGACAAGACACGCACCCTGCCTGATT
GCACCACCTCTCCTAGGTTCGATGTGACCGGCGGCATCCGAACCTTCTGC
GCGCGACACGTTGAAGAACGCACAGCAGCAGTGGCTCCCGCTACATCCAC
TATCCTACCTGGCGTCGGCGGTAGTACTGGTGGCGCGCTAGGGTGTGGCA
GTGTTGCACCAGATGGGGACACCGCCCGCCGTGCCGGTACCGGTGCAAAG
AGGAGAGACCGCTCTACCTCATCGACCCAGACAGGGACATGTGCCGGTAG
GAGCAAGGTGGTCAGCAAGCGAGCCCGCCAGGCCCCCGTCCACACACCTG
TGACTCCGTACTCGCTTGAGACAGCAGTAGTAGATGAAAGCCATACTCCA
GTCGGAGATAGTTCGTTGTCGGACTCAGGTGATGCTGCAGTGAAGACAGA
GTTGGCGGCCGCTTCCAAGTCGGACCTTACCCGCGGCCAGAGCTTTCCCA
GTGGAAGCGGTAGCAGGCGATCGAGTTATCTCCGCAGAAGGTGTGTGGGA
ATCTAGTTCCCGTCGAAAATATTGGTAGCTGGGGGTGAGTTGAAAATAGT
CCCTTGTGCTGCAGCAGCCGAGTCTATGCCACCATTATTTCATCACTGAG
TTATCCTCTCGCCGCCTGCGTTTTGGTTCTCGTCATGTTGGGGCTGAATG
TAAAAGGGAAATTCGTTGCTTGCGTTGTGCATTAATGCGTGATTCACTGG
TTGCTTCGATAACTCTGCGGGCAGGACAAATGGCTTGGGTCCTACTCTTT
TAGTATGAGGAGCTGGTATGGCATATCGACGTGCATGTATGGCCTACGAT
GAGCTCCCCGGAGTGACGAGTCGAGACTCGTATGGTTCGACCGCGTCGTT
TGGCGTTTTTAATTTTTTTCGAGCTGATTTCTCATAACAACGCCAAGTTT
TTGCTCTCTAGAATATTGCTCGGAGTTTTTCATTCGCATGAGGCGTCTCT
CCCATGCGATAGCACACAAAGCTGCATGTCCAATCTCGTGTGGTAGCTGC
GATGTTAAGGTCTATGAGATCGGCGATATACGGTAACAGATGAACATGAA
TGCGAGTACAAGTACTACATAGATTCGCGTCTACAGTATACTAGTGATGA
ATTCGAGAGGAGCACACCACCGGCGACCCTACGGTTGTACAACCGTTGAC
CCTAGAATTGAATCACGGTTGACCCTGCGGTTGTATCACTGCTGTCGCCG
TCGTTTGTTGAATCTCGTGCTTATCCTTTTCGGCTTTCCAATGCGTCACT
TTGAAACAGGTCAGCTTCATCGCAGGAGAAACAAAAGGCGAGCGAGGGCA
ACGCGTAGACAGCACGGGGTTGCATTCTTGAGTGACGGCGACAGCTACAG
CCGTTGGCGTGGTCTTCTACGTTTATATCTTCTGTCGGTGTTTACGCTAA
TTTCTAATCGTTGCTTGGAGGCGATTATTTTCTACCGATTCAGAAGGTGC
CAATATTCGGCATCCACGGAGTGACGGGGTGTTTTCTTGCGACCACAGAG
TACACGACAGCCAACAGTATATTGGTCAATTGGACTCTGGATCATATTTC
GGACTCTGAGAACAAAGATTGTGTTACGGCCAAACAAAGTCAGAGCAACA
AGGTCGAGCATAGTCGTAACACGGCAGAACACACACCACCACCACAAAGA
ATAATAACATATCTTCACGTTGACTGCTCTGTTGACTTGTTGTGCAGGCT
CACGCACGTTTGTTTGTACAACAAGTACATCAGGTACAGCAGTAGTAGCA
GCGTGTGCGGGGCGGGGCACATCGTGTGGCGTACTACAACCGCATCAGCC
GAGCTGCTTCACACGCAAAGTTTCGTAAGTAGTTGACGATCTTCCGCTGC
TGTGTAAGTGGACAGTAAGGGAAAAGTTGCTGGTGCTCTGCCCTTGCCCT
CTTCGCGCTTACCTGGTATTATTTTCGCACGCGGTAGATTTTGTTTTTTT
CGTGAACGTGGTACTTTGTGTATCGTTAGTACCTAGATACCTAGAAGTAC
GTTTACTTGGTCCGGGTTGCTTTTAAGTTTTATTTTAGGAAGAGATAAAA
ATCCAAACGAATAGGCGCCAAACAGTTGTTTTTTCAGCTGTCGACGAAAG
GATTAGGAGAGAGGCAGGCAGACCGCCAGGTGTGTGTGATAACAAGGCAC
GCTCCTTACCGACTGGTACACACAGGGGTTGCGTTTGTTCGTGTGTATTA
TTTATGTTTCGTTTTTCTTCTCTTCTACTGCTGTTTGCCCTTTTGTGTGA
GCTGTCTTCTTTTCAACTTTACTTTCTGGTGTGACCATGGCGTCACGGGG
AAATTTGATTTATTTCTTCCCTCTTCATCGAAGTGTGGTACTTCATTCAC
TACTTGAAGAAGTACTTTTGCACCCCCGGGAGTGGCAGGGGCGAATCTTG
TGTGTGGAAACCCGACGAAGGCACCCACCTCGCCTCGTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig654:70884..74722-

>mRNA_P-littoralis_Contig654.18.1 ID=mRNA_P-littoralis_Contig654.18.1|Name=mRNA_P-littoralis_Contig654.18.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1611bp|location=Sequence derived from alignment at P-littoralis_Contig654:70884..74722- (Pylaiella littoralis U1_48)
ATGGTGGACGTCGTCAAGAAGAGGTGCACCCACCGTGACTGCGTCAAGCA
GCCAAGCTATGGTGAGAAGGGCACCAAGGCAGCGGAGTTCTGCTTTGGAC
ACGCAAAGGACGGGATGGTGAAGGTCGTCAGCAAGAGGTGCACCTACCGT
GACTGCACAAAGCAGCCGGTGTACGGTGTGGAGGGTACCAAGACGGCGGA
GTTCTGCGTTGAGCACGCTAAGGACGGCATGGTTAACATCAAGGACAAGA
GGTGCACCCACCATAGCTGCACCAAGCATCCGACCTACGGTGTGGAAGGT
ATGAAGGCGGCGAAATTTTGCTCGGAACACGCCGAGGACGGGATGGTGAA
CATCAAGCACAAGAGGTGCACCCACCATGGCTGCGCCAAGCATCCGAGCT
ATGGTGTGCCTGGTACCAGGAAGACCGAAGTTTGCTCTGAACACGCCAAG
GACGGTATGGTGAACTTGAAGGACAAGAGGTGCACCCACCGTGGCTGCAC
CGTTCGCCCAAGCTATGGTCTGGAGGGTACCAAGATGGCGGAGTTCTGCT
CTCGACACGCCAAGGACGGTATGGTGAACATCAAGGACAAGAGGTGCGCT
CACCGTGGCTGCACCAAGCAGCCGAGCTATGCTGCGGCTGGTAGCAAGAC
GGCAGATTACTGCTTTGGGCACTCCAAGGACGGTATGGTGAACGTCGTCA
GCAAGAGGTGCTCCCATCGTGGCTGCATTAAGCGGCCAAGCTATGGTGTG
GCTGGTACCAAAACGCCAAAGTACTGCTCTGGACACGCAAAAGACGGAAT
GGTGAACGTTCTTCCTAAGAGGAAGAGGTGTCTTCACCGTGGCTGCACCA
AAAAGGCGAGTTTTGGTGCGGCTGGTACCGAGGCGGCGGAATTCTGTTCT
GGACACGCCAAGGGCGGAATGGTGAAGGTCCTCAGCAAGAGGTGCGCCCG
CCGTGGCTGCATCACACGGCCCAGCTATGGTGTGGCTGGTACCAACACGG
CGTTATTCTGCTCTATACACGCCAAGAGCAGCATGGTGGAGGTCAGCGAC
AAGACACGCACCCTGCCTGATTGCACCACCTCTCCTAGGTTCGATGTGAC
CGGCGGCATCCGAACCTTCTGCGCGCGACACGTTGAAGAACGCACAGCAG
CAGTGGCTCCCGCTACATCCACTATCCTACCTGGCGTCGGCGGTAGTACT
GGTGGCGCGCTAGGGTGTGGCAGTGTTGCACCAGATGGGGACACCGCCCG
CCGTGCCGGTACCGGTGCAAAGAGGAGAGACCGCTCTACCTCATCGACCC
AGACAGGGACATGTGCCGGTAGGAGCAAGGTGGTCAGCAAGCGAGCCCGC
CAGGCCCCCGTCCACACACCTGTGACTCCGTACTCGCTTGAGACAGCAGT
AGTAGATGAAAGCCATACTCCAGTCGGAGATAGTTCGTTGTCGGACTCAG
GTGATGCTGCAGTGAAGACAGAGTTGGCGGCCGCTTCCAAGTCGGACCTT
ACCCGCGGCCAGAGCTTTCCCAGTGGAAGCGGTAGCAGGCGATCGAGTTA
TCTCCGCAGAAGGTCAGCTTCATCGCAGGAGAAACAAAAGGCGAGCGAGG
GCAACGCGTAG
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