mRNA_P-littoralis_Contig65.54.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig65.54.1
Unique NamemRNA_P-littoralis_Contig65.54.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig65.54.1 vs. uniprot
Match: D8LQL5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQL5_ECTSI)

HSP 1 Score: 238 bits (608), Expect = 8.460e-78
Identity = 124/179 (69.27%), Postives = 141/179 (78.77%), Query Frame = 1 
Query:    1 MAGPNIKWTAGPGPAPLPYSKRAREAMGVSDDDKPWAHPDPPAAENWGFGGGKGGGDSDILREGRLRTNLFIIVLSIIVAIWVYRKYVKRDHNPFFYVPPTELQDPKVRQIREGVRIAREARLKRFEETKTSYADMMMEAAGGWTPGD--ESDGVDGGAAVAGVEGSPSGLRRRRGNEE 531
            MAGP+IKWTAGPGPAPLPYSKRAREAMGV+DDDKPWAHPDPPAAE+WGFGGG   G+SD L EGRLRTN F+IVLSII AIWVYRK VKRDH+PFF+V PT  Q   V+ + E +R AREARLKRF+ETKTSYADMM EAAGG  P +   +D   G +  A  +G   GLRRR G ++
Sbjct:    1 MAGPDIKWTAGPGPAPLPYSKRAREAMGVTDDDKPWAHPDPPAAESWGFGGG---GESDTLTEGRLRTNFFLIVLSIIFAIWVYRKVVKRDHSPFFHVSPTPPQSEDVK-VSEDMRTAREARLKRFQETKTSYADMMKEAAGGCPPAETVRNDDDGGNSVAAEGQGYSDGLRRRGGGDQ 175
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig65.54.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQL5_ECTSI8.460e-7869.27Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig65contigP-littoralis_Contig65:200105..206583 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size534
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-10_006120.1
Cds size534
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791354.6535919-CDS-P-littoralis_Contig65:200104..2002991680791354.6535919-CDS-P-littoralis_Contig65:200104..200299Pylaiella littoralis U1_48CDSP-littoralis_Contig65 200105..200299 -
1680791354.6678095-CDS-P-littoralis_Contig65:200841..2010841680791354.6678095-CDS-P-littoralis_Contig65:200841..201084Pylaiella littoralis U1_48CDSP-littoralis_Contig65 200842..201084 -
1680791354.6820254-CDS-P-littoralis_Contig65:206487..2065831680791354.6820254-CDS-P-littoralis_Contig65:206487..206583Pylaiella littoralis U1_48CDSP-littoralis_Contig65 206488..206583 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig65.54.1prot_P-littoralis_Contig65.54.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig65 200105..206583 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig65.54.1

>prot_P-littoralis_Contig65.54.1 ID=prot_P-littoralis_Contig65.54.1|Name=mRNA_P-littoralis_Contig65.54.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=178bp
MAGPNIKWTAGPGPAPLPYSKRAREAMGVSDDDKPWAHPDPPAAENWGFG
GGKGGGDSDILREGRLRTNLFIIVLSIIVAIWVYRKYVKRDHNPFFYVPP
TELQDPKVRQIREGVRIAREARLKRFEETKTSYADMMMEAAGGWTPGDES
DGVDGGAAVAGVEGSPSGLRRRRGNEE*
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mRNA from alignment at P-littoralis_Contig65:200105..206583-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig65.54.1 ID=mRNA_P-littoralis_Contig65.54.1|Name=mRNA_P-littoralis_Contig65.54.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=6479bp|location=Sequence derived from alignment at P-littoralis_Contig65:200105..206583- (Pylaiella littoralis U1_48)
ATGGCTGGTCCAAACATAAAGTGGACGGCTGGTCCCGGCCCTGCGCCGTT
GCCGTACTCGAAGCGGGCACGAGAAGCTATGGGCGTTTCTGATGATGTGA
GAATGAGAGTTCTGTACTCGTATCATACGAAGCACGTAAGAAGCGTGTGT
CTACTGCTGCACACAGCACAGGAGATGACGTGTGATGTACGTCGTCGGTG
TGGTCGGCGTCCAAACGATATGGCATGATACTGCAGTGACCTGCCATCGG
TCCACCCTGTGTGTGTACCCGCATCGGTGTGTGACTGATGTGTATGTCGA
CAGCACAACCACTGCTAAGCCGCTGTCTGTAGACAAAAAAACAGATAACG
GCTTAGGAACATCCAGCCGACGTCGGTCGACGTCGTATAGTAGACCATGT
CTCACAGCAATAGTCTAGACTCTTCTCGATATGAGGTTGCACCCCTGTTT
CCGATGTAACTGCCGGCCGTATCCGATGGCAAACAACAACCTCTTAGTCC
GTATTGTGGCTAAGGCTGAATCTTGTGCTTGCACCCCTGTTTCCGATGCA
ACTGCCGGCCGTATCCGATGGCAAACAACAACCTCTCAGTCCGTATTGTA
GCTAAGGCTGAATTTGTGCACACAGATTTTTTGACGGACAGATCTTCAAC
ACTGCAATTTTTCGGGCAAAAATCTGATATTCTGGATCATATCATACGAA
GTACAGTGTGTGTTGTCATCCCTTTAACCCTTCTGGAACTTCTGAGGTGA
TAAATGCATCAAAAAAATTAATCATAAGGCTACATCTTATGTGTCAGAAC
CGTTCATATATTTTTATTTTATTTGGCTGTTTTGAACATTGGCCCAAAAA
CGGAGCATCTTGTGTGATCAGAAACAGCCATTTTAGACAGCGACTTTTCG
AATAAATTTTTCCGATAGCCCCAAACGATCAGAAAAAGTCTTTTTTTCTG
ATGGCCTGCAGCTATCGAAAACCTTTATTTTGTTTGGGTCAAGGCATTTG
AACAACCCAAGTTATAGTCAGCCTTGCATGATGAGATGACCTGAAAACTT
TGGTTTGGTAGCCCATCGATTCCTCGCGGCCTCTGATGACTGACGCAGGA
GAAGGACCATACATACACCTCACGGCCGATGGCTTTAGTATTGCTGTGGG
TTCTTTCGTTCGAGAGCGATGAACCAAAAACCAAAACGGATCGGACGAGA
ACTGGCAGCTAGCTGATGCTTGCTGCTGCTGCTGTCCTCTGAACTCTTCA
ACCAGGAGCAGTTTTTTTGCCGCCACACCAGTTTGGTTTATTGTTGATTG
CTCTCGAACGAATGAAGCCACAGCAATGGTAAAGCCATGCCTCGCGAGCT
GTGAACATGGTCTCTCTTCTCCGGTGGTCCTCTGAAGGATCGAGGCATCG
ATAGGCTGGCGTAGAAGGATTGCAGGAATTGATGGCCAGTGGAAAAAAGA
AGAATTCACCACCTCCACCTGCTGCTGGTGAGCTGAATCGATTTTTTTTC
GTTTCTTCACACGTCATCGATGATGCCTGCAACCTTTTTTCGCTAGTCTA
TCGATACCTCGCGGTCTTATACAACCACGGGAGAAGAAGGACCATACACC
CAGCTCGCGAGGCATGTCCTTACCATTGCTGTGGCTTCATTCGTTCGAGA
GTGGTGGACGAAATAGCGAACCGGTGACAGCAGTGCAATATGAAAGTCAA
GTTGTCTACCATCAAACCGCCCCAGCCGAACAGGAGAGACTTTTTTTATT
CGGAAGTTAAAAAAAATAAAACCACCTGCTGTTCGGTTTTGACACATAAT
ATCGGGTCCTTCAACAGAGCCTGCTGGAAACGTTACTATTCGAACGGTCC
AAAACGAATAATGACGTTTTTGACACATAAGATGTAGCCTAAGACCGGAT
TTAATGGGGACGGCAAAATCCGTAAAAGTGCAATCTTGTCACAAAATGCT
CGTCAGCATTTTGGAGCCGAATGTTCGTTTCCCAAACATTTCGCATCGCG
GCTTGTGGTCACAGAACCTTTTTTTTTCCCTTTTTGTATTTTTTTTTTTC
TGTTCTCTTTTTTATTATTTCCGGTGGTATGGGTCTGCGGCTGGCTGTGT
CGACGAGTGTTACGGACAAAAATAACCATTGCGCCATGGAATCTGAACGT
CGAGAGGCCGTAGAGAGCTCGTAGCAACTCTCTTGTCACCGTGTCGACAC
CTTGACCACTGGTTGGTGGAAGCGTGCCAGACATGCAAAATAAATGAGCA
ACGGTTCGTTGATTGTATGAGATGGAGTCACGTGCGTGTGTTCTGTCTTC
CCAACCGAGAGCAGAGCCGTTCACGGAGAGATGAAACATAATACGTTCCA
CGTGACCTACATGAAGAGCCGCTCCCATTTATTTTCTTAATTGGAGCCTG
GCGGGTCCACGTGTGCCCGTCACCAACCCACAGCCAAACAAAGTGTTTGT
CATGGTGATTTCAAGGGTTTCTTTGAGCCCTCTCTGTCGTGCTTGTACGT
GTGTGTCACCGTTGGTATGTGGCTGGTGTATGCCAGGCTCTAAGCCGTGT
GTGTGTCATCTGAAGGTCGTGTTTGCGCTTGGTGTTGGTGTGTCGGGGGT
CGGGACAATAAGCGGGCCGACTTTTAATTCCCGCCGCGTCAGGATTTTCA
AGACTGCCGAGTTTGGGAAATGTTCACCAAACATTTCCCAAAAAGGGTCG
GAATGGGCCGGTTGGGAAATCTTCGGCCGCATTTTCAGAAGGATTTTTAT
CCATAAAAAGTGAAAAAAAATGCTCGTCGCCGAATCCTGGCCGAAGATTG
CACTTTGATGAATTTTTCTGTCTTCATTAAATCCGGTCTGATATATCTAC
TTTTTTTATATAAGCCAGTCTCTTCGGGACGGGGACAGAAGCAAAAAATT
CCCGAACCCCTCACGTTGGGAGTTGAGCAGCATTCCGGCTGCACTCAGAT
ACGGCCAAGAGGACAAACAAATACCGCTCACAGCTGCTGCTGTGTGTGTG
GTCAAGGGGTGTGAGGGTGCCCAGCAAGACTCAGTCAACATAATAAATCC
CCGGCATGTCGAAATCTGGAATCATCTTGTCTGACACAGTATAATATACA
CTTCGCAGTGTATCATATTTTTCTGGAGTGCTAGTGCAACACCACACCAG
CATTATCGCAGCACTACTCCTACTACTGCCGCTGCTGTACAGTACATCAC
ATGCCATATGATACCTCCTCCCATGTTGATATGAGACAACAAGCAAGAAG
AGCAGTAGTAGTAGAGAGGTAGAGAGTCATACCTCTATGTATGATACATC
ATGGTATCTTATTTATTACTTCGAATCTTGTTTGGTCAAAACCCAGCGAC
AACAGCAGCAGCAGCATGTATGAAGATGTGTAGATACATGCGATGGTTGC
TAGCTTACGACTACTGCGGCTGCGGCTGCTGCTGCTGCTACTACCAGTAC
CAATGATGTGCCTACTATGTGCGAGAAGGAAGGACCGGCCTTCAGGTCGG
CCGCAGGCGACGGGGCCCCTGCGCAAAAGTACGTTTAGCAGACCGGGAGC
TACAGCGGGAAACGAACTCCCTAGCAGTAACTATTTTTCCTTATTATCTT
GTTTTGAGCGGACTGGATACTTTAAGCGCTATTGATGGTTAGAACACGTT
GCACGACGCCTGAGAACTAGCCGCGGCATCTCGACCACCAGGTATCCCTT
CTGTACTCTCCAGGGACGTAACCAGCCCGCTGTGAGCTCCCGTCAGGGGC
CCTGGCTGTATATCTTTGTGGTGCGGTTGTGTACATTTTCTCTTGGTTTC
GTGACTGCTGTACATTTGAAAGGGACATTTGAGCCATATTTTTTTTCTCG
GGGGAACATTGTATGGTTCTGATTTGGAACCCGGGCTGTTCGTGTGAAAA
GAAACAAAACACCCTGGACCCAGAAGGGTTAATTGGACGCCACTCTACAC
CTTTCGGGTAGGTAGACGCTCCAAGCGGGGCCACACAGGGGAAGTCAACA
CAGGAGTTTTTTTTTTTTCTCCACTTCCCTCTGCGGTGCTTGCCTTGGTT
TTGGTTGAGCTTTTATCGCGAGATAGGGGACAGCAATCCCTTTCCCTCGT
CGATGGTACGATCGAATTTGGTTTACTCGCGAATTGATCGCTTTCCACTT
TCACGCGCAAATAAATGTGAGAAGAAAACCCAGATCGTGTTATTGCACTG
GGATTCGAACTCACGCGTGAATGTCAGAAGGTTGCGTGAATTACCAACTG
AACCACGGGGCGACCGGTATTTCGTATAGGTTACCGCTGTTTACGGGTTG
TACTATTAATAAGATGGTCAGCCTGTCTTGTGGGACACCCTGTACTTCAA
ACCTGGTACCGTACAGATTTCGAGAATCTGTATCTCCTGGTTTTGCAGTA
TCCTCCAGAAGCGTGGTGCAATATTGCACAACACACACACACACGTACGT
GGAGGGACCAGGCCGCACGTCCGCGTCCACGCACGCACCACGTGCCGCCA
TCTATCTGACAGCAAAACAAACCCAACAAACTGCTGTACAGTATACACAC
AGAGATAAGGCTGTGGTTCATATTGAAAGCCAAAATGTTGTTACACCCCA
TATCACACACATCCATCATCATCATAGACAGACAACAGCATTGGACAGGC
CACCGAACGAAGTGCACAGCAGCAGCAGCAGTGGTAGTAGTCGTGAGGTA
GTTGCCAAAAGAGCAATGATTTGTGCCCATGACACACCATGCCGCGTTCG
CTGCCTCATATGATCGAGCTAGGCTCCATCACGGGTTGGGTGTGGGGTTC
GGTTGCGTTGTGGTTGTTGTGGTGCTGGGCGTGTGTGCGCTCAACACGAT
CACCGTAAACAACAGCAAATACAGCAGTAGTACAGAAGCAGTAGTAGCTC
GGGGGTGTGGTGCGACCCCATCGTGCAGGTTGAATCGACGAAAACTCAAG
ATCTGTGAGCCAAATCTGTCCATGGACACAGACGAGTTTTGTACTCAAAA
TCTGTCGGACTCGCCCCCCGATTGTCGTCTACAGATTATTCGGCCACCAA
ATCCGAATAATATGGGTCAATGAGATGGACCAAAAAATGTGTCCCGCAGG
TTTTGAAGATATGTTTCTCATATCTGTCACCATAAAATGCAGCCTAAACG
CCTTAACACACCAGATGGTTGATGGGTAGATCCTCACGTGGGTAATCCAG
CTACTGCTGCTCAACCTTTGGGGGGTATCCGGAATATATTTCATAACTTG
CAGTCAAGAGCGTTGGAGCTCACCTCACCCCGCAGATTGCCCACTCGTTG
GTATTGGACGGAATTCTGCAGAATCATAGAGCATTATACTATTCGCAGCA
GTAGAAGGATGCGCTGGTGTTGAGCAAATACTACTGCAGGATCAAAAGCC
ATGACGCAACGGGTAACCTCTAAGTTACCGTGAATTCATATCTCCTTCAT
ATCTACTGTCGATGTTGTTTGACTTCTTTGGCTGTGACTTGTGCCACAGG
ACAAACCCTGGGCGCACCCTGACCCACCTGCGGCAGAGAACTGGGGATTT
GGCGGTGGGAAAGGCGGTGGTGACAGTGATATTCTCAGGGAGGGGAGGCT
ACGGACAAATTTATTCATCATCGTGCTATCGATCATTGTCGCCATCTGGG
TGTACCGAAAATACGTTAAGCGGGATCACAATCCCTTCTTTTACGTCCCT
CCAACCGAACTCCAGGACCCTAAGGTGAGGCAAATACGAGAGGTTCACAG
TCATCCAGTAGACCGACATGTATACCTCGATTATGGAGTTGGGAAACATG
TCTCTCTCTTGACCTTAAACACGTCTCAACCATGGTCTCTTCTCAAGCCA
CCGCCCTCTTTTGCGTCCAATCTCGTCGCGAAAAATGCTGCGACCCAGGT
GTTTCAGGTGAAAAACTAAATTGCTAGGTCCCGGGCAGAAGCCCCCCGCC
GAGGCAGACGATACCCCATGCCGTCCCTGCACGAACAACTTAATTTTACC
AGCAATGCTTTAACCCCCCCCCACACACACCTTCTCATTAAACTTGGCCA
AATGTCAGGAGGACTTCGGCGAACAGCGCGAGGGGCCCGACTCGAACGCT
TTCATTTGGCGGAAACATAAATATTTGTAAAAATTATCAACCAATTTATT
GTCCCCCATTCAATAAATATTTTCAGTCCCAAATCCACCCATTTGTGTTT
GACCCTATTATATCCACCCCCTCCCCCCCCCCCCCCCCGATTTTTTCTCC
CCTCAATTCGTGACTCGACCAGGTGTCAGACGAGGGCGTACGAATAGCGA
GAGAGGCCAGACTGAAGCGTTTTGAGGAAACGAAAACGTCATACGCCGAC
ATGATGATGGAGGCGGCTGGGGGTTGGACCCCCGGAGACGAAAGTGATGG
TGTTGATGGTGGGGCAGCAGTGGCGGGAGTGGAGGGGTCTCCGTCGGGGT
TGCGACGAAGACGGGGTAACGAAGAATAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig65:200105..206583-

>mRNA_P-littoralis_Contig65.54.1 ID=mRNA_P-littoralis_Contig65.54.1|Name=mRNA_P-littoralis_Contig65.54.1|organism=Pylaiella littoralis U1_48|type=CDS|length=534bp|location=Sequence derived from alignment at P-littoralis_Contig65:200105..206583- (Pylaiella littoralis U1_48)
ATGGCTGGTCCAAACATAAAGTGGACGGCTGGTCCCGGCCCTGCGCCGTT
GCCGTACTCGAAGCGGGCACGAGAAGCTATGGGCGTTTCTGATGATGACA
AACCCTGGGCGCACCCTGACCCACCTGCGGCAGAGAACTGGGGATTTGGC
GGTGGGAAAGGCGGTGGTGACAGTGATATTCTCAGGGAGGGGAGGCTACG
GACAAATTTATTCATCATCGTGCTATCGATCATTGTCGCCATCTGGGTGT
ACCGAAAATACGTTAAGCGGGATCACAATCCCTTCTTTTACGTCCCTCCA
ACCGAACTCCAGGACCCTAAGGTGAGGCAAATACGAGAGGGCGTACGAAT
AGCGAGAGAGGCCAGACTGAAGCGTTTTGAGGAAACGAAAACGTCATACG
CCGACATGATGATGGAGGCGGCTGGGGGTTGGACCCCCGGAGACGAAAGT
GATGGTGTTGATGGTGGGGCAGCAGTGGCGGGAGTGGAGGGGTCTCCGTC
GGGGTTGCGACGAAGACGGGGTAACGAAGAATAG
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