mRNA_P-littoralis_Contig65.51.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig65.51.1 vs. uniprot
Match: A0A6H5L7E1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7E1_9PHAE) HSP 1 Score: 120 bits (302), Expect = 3.080e-24 Identity = 142/437 (32.49%), Postives = 185/437 (42.33%), Query Frame = 3
Query: 126 SDSQDQNLTGLDGFEVEIFKVVRQEAASEQWKEWLRVPLEHAAAKQGQRGSLHEADGCWCRRQRR-------------LAGKQWANATRLRCTR*KREGGCCSAQRRRKA*P*RQVGWRRKESRHCMWQRHKVQTPWLRLSSCLLGQTLICDMWKNVVPSTLQLKRGIMWS*ESCC*KGHCPNEKTGDEEREETPLHLAAKEGHALWVSRLLLGGADIDSRNNKGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSCDSNGFTALHVAAGVDGSVRDNGGVVRFLLEAGADIEARTTDTY--TPLHITADCLKPSTSSGXXXXXXXXXXXXXXXXXXXXXXXXLACRRSNVAGVELLLRWGADEKTRGDDGCVAEHLMGV*ERYSDVWDDGRSQRHADDSRIRQMLA 1391
S ++++ + +DGF++EIFK+V++EA SEQWKEWLR PLEHAAAK+ GSLH ADG W + R L G + +A + R + C A A P R W + ++ T ++S + + + V +L L R + + KT + TPLHLAA EG AL +S LLLG N L + A VDG V DNG VR LL GAD+ A+TTD+ +PLH+ D + S G XXXXXXXXXXXXXX LACR S+V GVELLLRWGADEK G ++ R D +R ADD RI +M+A
Sbjct: 4 SKREEEDRSRVDGFKIEIFKLVQREATSEQWKEWLRAPLEHAAAKE--LGSLHTADGHWSEKMVRTLLTAGATDDANVLFGVEHESALHVVLARGAEDS--CRALMIAGADP-----TLRDRGDDTRWFK-EMDTRIFNMTSVIERIWVAAVAGHHRVIGSLLLNRADV-------------HAKTASQS---TPLHLAASEGRALCLSELLLGA-------NNHLEAVQELLAAGANCGLRCMLTNGSHSSLDMAAGRGHADVLTALLDKDN---------------------IFFAMSVDGPVHDNGDAVRALLGVGADVNAKTTDSICASPLHLAVD--RRIASDGMIXXXXXXXXXXXXXXGDDNKPLHLACRHSSVHGVELLLRWGADEKLTNSVGKTPADVI----RALQQGDLDDKEREADDQRIGRMVA 380
BLAST of mRNA_P-littoralis_Contig65.51.1 vs. uniprot
Match: A0A6H5L812_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L812_9PHAE) HSP 1 Score: 102 bits (253), Expect = 6.210e-19 Identity = 112/437 (25.63%), Postives = 161/437 (36.84%), Query Frame = 3
Query: 126 SDSQDQNLTGLDGFEVEIFKVVRQEAASEQWKEWLRVPLEHAAAKQGQRGSLHEADGCWCRRQRRLAGKQWANATRLRCTR*KREGGCCSAQRRRKA*P*RQVGWRRKESRHCMWQRHKVQTPWLRLSSCLLGQTLICDMWKNVVPSTLQLKRGIMWS*ESCC*KGHCPNEKTGDEEREETPLHLAAKEGHALWVSRLLLGGADIDSRNNKG---------------LXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSCDSNGFTALHVAAGVDGSVRDNGGVVRFLLEAGADIEARTTDTYTPLHITADCLKPSTSSGXXXXXXXXXXXXXXXXXXXXXXXXLACRRSNVAGVELLLRWGADEKTRGDDGCVAEHLMGV*ERYSDVWDDGRSQRHADDSRIRQMLA 1391
S ++++ + LDGFE+EIFK+V++ A SEQWKEWLR P EHAAA+ G+L TRL + G + GWR R + ++ + ++ G T ++ L + G PN + + R+ +PLHLAA GH V LLL A + ++ + ++ D G+ ALH AA +DG VRDNG VR LL AGAD+ A+ T + + S G +AC RS+ GVELLLRWGAD+K + G H++ ++ D DD + AD+ RIR+MLA
Sbjct: 4 SKREEEDRSRLDGFEIEIFKLVQRGATSEQWKEWLRAPREHAAAE----GNLDFF-------------------TRLM------DAGANAG-----------AGWRGCNGRTLLGAAAFGRSEKMVRTTLTAGATDDVNVLFGGEREALMID-------------GADPNVR---DRRKRSPLHLAAVAGHHRVVGMLLLNRACVHAKTASQXXXXXXXXXXXXALCISELLLGANSHLEAVQELLAAGANYSLRTNGSRSPLEIAANRGQADVVKALLDKDSGEVDATDGGGWAALHYAASIDGPVRDNGDAVRVLLRAGADVSAKGTKDPCDTSLYLAVNRRIASDGTIRALLEGGANINARIGGDQTPLHVACSRSSAVGVELLLRWGADDKLTTNVGQTPAHVVRALQQ--DDLDD--EELEADNQRIRRMLA 380
BLAST of mRNA_P-littoralis_Contig65.51.1 vs. uniprot
Match: D7FZ92_ECTSI (Pfs, NACHT and Ankyrin domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ92_ECTSI) HSP 1 Score: 97.8 bits (242), Expect = 8.350e-18 Identity = 166/446 (37.22%), Postives = 210/446 (47.09%), Query Frame = 3
Query: 135 QDQNLTGLDGFEVEIFKVVRQEAASEQWKEWLRVPLEHAAAKQGQRGSLH--------EADG-----CWCRRQRRLAGKQWANATRLRCTR*KREGGCCSAQRRRKA*P*RQVGWRRKESRHCMWQRHKVQTPWLRLSSCLLGQTLICDMWKNVVPSTLQLKRGIMWS*ESCC*KGHCPNEKTGDEEREETPLHLAAKEGH-----------------------------------ALWVSRLLLGGADIDSRNNKG-LXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSCDSNGFTALHVAAGVDGSVRDNGGVVRFLLEAGADIEARTT-----DTYTPLHITADCLKPSTSSGXXXXXXXXXXXXXXXXXXXXXXXXLACRRSNVAGVELLLRWGADEKTRGDDGCVAEHLMGV 1310
++++ + +DGFE+EIFK+V++EA S+QWK+WLR PLEHAAAK G+L A G W R+R L G C ++ + + ++ + G T + V + +M + G PN D + +PLHLAA+ GH L +S LL+GGAD D + KG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ++ D G+TALH AA VD SV DNG VR LLEAGAD+ +T D +TPLH+ + + S XXXXXXXXXXXXXXX +AC NV+GVELLLRWGADE + +GV
Sbjct: 6 REEDRSRVDGFEIEIFKLVKEEATSKQWKQWLRTPLEHAAAK----GNLDLFTRLIDAGAGGEPGWQGWGHRERTLLG-----------------AAACG-------------------NKSDVMVQALLEAGETEFVNTSFGATRESALHVTVARGAEDASKALMMA-------GADPNLGNVDGD---SPLHLAAEAGHHRVIGILLLRKEAQSADPMNLFLETXXXXXXXXXXXLCISELLMGGADKDVTDGKGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRGNAAMLKAFLDKDSREVDATDGRGWTALHYAAYVDRSVHDNGDAVRALLEAGADVNVKTDAHASDDIFTPLHVAVN--RRMASICMIXXXXXXXXXXXXXXXCNQTPLHVACMWGNVSGVELLLRWGADEMLKNHRADTPADEIGV 399
BLAST of mRNA_P-littoralis_Contig65.51.1 vs. uniprot
Match: D8LQI9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQI9_ECTSI) HSP 1 Score: 92.4 bits (228), Expect = 8.310e-17 Identity = 63/154 (40.91%), Postives = 79/154 (51.30%), Query Frame = 3
Query: 948 DSNGFTALHVAAGVDGSVRDNGGVVRFLLEAGADI-EARTTDT-YTPLHITADCLKPSTSSGXXXXXXXXXXXXXXXXXXXXXXXXLACRRSNVAGVELLLRWGADEKTRGDDGCVAEHLMGV*ERYSDVWDDGRSQRHADDSRIRQMLASARA 1403
D G+ ALH AA VDG VRDNG VR LL AGAD+ E D+ +TPLHI + K S G +AC+ ++V GVELLLRWGADEK + G ++ R +D D +R AD+ RIR+ML A A
Sbjct: 114 DGEGWAALHYAAVVDGPVRDNGDAVRVLLGAGADVNETNNNDSCFTPLHIAVNGRK--VSDGTVRALLEGGSNIHARALLDQTPLHIACKHASVTGVELLLRWGADEKLTNNVGKTPADVIRP-RRQNDF--DDEEEREADNQRIRRMLEHAPA 262
BLAST of mRNA_P-littoralis_Contig65.51.1 vs. uniprot
Match: A0A6H5JB39_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB39_9PHAE) HSP 1 Score: 87.8 bits (216), Expect = 1.340e-14 Identity = 115/252 (45.63%), Postives = 141/252 (55.95%), Query Frame = 3
Query: 663 ETPLHLAAKEGHALWVSRLLLGGADIDSRNNKGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSCDSNGFTALHVAAGVDGSVRDNGGVVRFLLEAGADIEAR-----TTDTYTPLHITADCLKPSTSSGXXXXXXXXXXXXXXXXXXXXXXXXLACRRSNVAGVELLLRWGADEKTRGDDGCVAEHLMGV*ERYSDVWDDGRSQRHADDSRIRQMLASARA 1403
ETP +AA GH L +S LL+GGAD D + KG XXXXXXXXXXXXXXXXXXXXXXXXXX ++ D+ G+TALH AA D V DNG VR LLEAGAD+ + + D +TPLH+ +P S XXXXXXXXXXXXXXX +AC +++GVELLLRWGADE + + ++GV + D D + AD+ RIR +LA A A
Sbjct: 116 ETPRQIAAAMGHTLCISELLMGGADRDVDDGKG---------------ETXXXXXXXXXXXXXXXXXXXXXXXXXXLTMSYRSPLQAAASRVDATDNRGWTALHCAAYFDRPVHDNGDAVRALLEAGADVNVKNDAHVSDDIFTPLHVAVS--RPMASICTIXXXXXXXXXXXXXXXCNQTPLHVACMWGDLSGVELLLRWGADEMLKKNRVDTPADVIGV---WGDE-DRNDEEIEADNQRIRPVLARAAA 346
BLAST of mRNA_P-littoralis_Contig65.51.1 vs. uniprot
Match: D8LD22_ECTSI (MHC_I C-terminus family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD22_ECTSI) HSP 1 Score: 87.0 bits (214), Expect = 5.860e-14 Identity = 64/158 (40.51%), Postives = 74/158 (46.84%), Query Frame = 3
Query: 939 NSCDSNGFTALHVAAGVDGSVRDNGGVVRFLLEAGADIEARTTDTY---TPLHITADCLKPSTSSGXXXXXXXXXXXXXXXXXXXXXXXXLACRRSNVAGVELLLRWGADEKTRGDDGCVAEHLMGV*ERYSDVWDDGRSQRHADDSRIRQMLASARA 1403
N+ D G+TALH AA ++ RD G VR LL AGAD+ A+TTD + PLHI PST G AC S+VA VELLLRWGADEK D ++G DV D AD RI QMLA A A
Sbjct: 271 NATDHYGYTALHHAALIEVHGRDKGDAVRVLLAAGADVHAKTTDDHLRCAPLHIAVCGRVPST--GTIRALLEGGADVNVRDIEDRTPLHEACTYSSVAAVELLLRWGADEKLTDDGDVTPADMIGT---SGDVGSD-HGDIEADGQRIHQMLARAPA 422
BLAST of mRNA_P-littoralis_Contig65.51.1 vs. uniprot
Match: D8LQN0_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQN0_ECTSI) HSP 1 Score: 83.6 bits (205), Expect = 6.470e-13 Identity = 58/151 (38.41%), Postives = 79/151 (52.32%), Query Frame = 3
Query: 957 GFTALHVAAGVDGSVRDNGGVVRFLLEAGADIEARTTDTY--TPLHITADCLKPSTSSGXXXXXXXXXXXXXXXXXXXXXXXXLACRRSNVAGVELLLRWGADEKTRGDDGCVAEHLMGV*ERYSDVWDDGRSQRHADDSRIRQMLASARA 1403
G+ ALH A D +VRD G VR LL AGAD+ + T+ TPLH+ + + TS+G +AC R + VELLLRWGADEK +DG ++GV E+ +D+ D+ +R AD+ RI +MLA A A
Sbjct: 279 GWAALHYVASFDETVRDKGDAVRVLLGAGADVNVKGTNDSCATPLHLAVN--RWMTSTGTICALLEGGANINARTAGDDTPLHIACTRLRGSVVELLLRWGADEKLPNNDGDTPADVVGVLEQ-NDLDDE---EREADNQRIHRMLARAPA 423
BLAST of mRNA_P-littoralis_Contig65.51.1 vs. uniprot
Match: D8LB27_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB27_ECTSI) HSP 1 Score: 82.4 bits (202), Expect = 1.460e-12 Identity = 61/155 (39.35%), Postives = 75/155 (48.39%), Query Frame = 3
Query: 948 DSNGFTALHVAAGVDGSVRDNGGVVRFLLEAGADIEARTTDTY---TPLHITADCLKPSTSSGXXXXXXXXXXXXXXXXXXXXXXXXLACRRSNVAGVELLLRWGADEKTRGDDGCVAEHLMGV*ERYSDVWDDGRSQRHADDSRIRQMLASARA 1403
D G+TA+H A G + DNG VVR LLEAG + A T + TPLH + + S +AC SNVA VELLLRWGADE D+G V ++GV +R DV D+ AD RIR+MLA A A
Sbjct: 273 DDQGYTAIHCAVNRHGPL-DNGAVVRLLLEAGGGVNAETGRDFLRWTPLHFAVE--RRIASIDTTLALLEGGANTNAHGDHSGTPLHVACMHSNVAAVELLLRWGADETCSNDNGDVPADVIGVYDR-GDVNDEDVK---ADHKRIRRMLARAPA 420
BLAST of mRNA_P-littoralis_Contig65.51.1 vs. uniprot
Match: A0A6H5JXF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXF0_9PHAE) HSP 1 Score: 76.6 bits (187), Expect = 1.450e-11 Identity = 53/157 (33.76%), Postives = 75/157 (47.77%), Query Frame = 3
Query: 939 NSCDSNGFTALHVAAGVDGSVRDNGGVVRFLLEAGADIEARTT--DTYTPLHITADCLKPSTSSGXXXXXXXXXXXXXXXXXXXXXXXXLACRRSNVAGVELLLRWGADEKTRGDDGCVAEHLMGV*ERYSDVWDDGRSQRHADDSRIRQMLASARA 1403
N+ + G ALH AA V G V D G VR LL AG D+ TT +TPLH+ D +S +AC+ ++V+GVELLLRWGADE+ + G + ++ + D+ D+ + AD+ RI +ML A A
Sbjct: 36 NATNDLGLAALHYAASVVGPVHDKGDAVRVLLGAGVDVNVNTTTDSCFTPLHVAVD---GRIASDGTIRALLEGADVDSRARHDQTPLHIACKHASVSGVELLLRWGADEQLTNNRGDMPADVIRA-RQQGDLDDE---EHDADNQRICRMLTRAPA 185
BLAST of mRNA_P-littoralis_Contig65.51.1 vs. uniprot
Match: A0A6H5KVD2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVD2_9PHAE) HSP 1 Score: 72.0 bits (175), Expect = 4.230e-11 Identity = 61/120 (50.83%), Postives = 72/120 (60.00%), Query Frame = 3
Query: 951 SNGFTALHVAAGVDGSVRDNGGVVRFLLEAGADIEARTTD-TYTPLHITADCLKPSTSSGXXXXXXXXXXXXXXXXXXXXXXXXLACRRSNVAGVELLLRWGADEKTRGDDGCVAEHLMG 1307
+N TALH AA D G VR LLEAGADIEA+T D + TP+H++A C + STS G XXXXXXXXXX LAC +S+V VELLLRWGA+EK G A +G
Sbjct: 25 NNWKTALHHAAEPSRRGSDKGNAVRVLLEAGADIEAKTKDCSSTPVHLSA-CSRSSTS-GAILXXXXXXXXXXAEEVDRCPPLHLACAKSSVPAVELLLRWGANEKLVDSLGQTAADTLG 142 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig65.51.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 24
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig65.51.1 >prot_P-littoralis_Contig65.51.1 ID=prot_P-littoralis_Contig65.51.1|Name=mRNA_P-littoralis_Contig65.51.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=169bp MEELLAAGANVDVRDLKEWSMLDTAATEGREDVMKVLLRHGGDTNSCDSNback to top mRNA from alignment at P-littoralis_Contig65:194206..198644+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig65.51.1 ID=mRNA_P-littoralis_Contig65.51.1|Name=mRNA_P-littoralis_Contig65.51.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4439bp|location=Sequence derived from alignment at P-littoralis_Contig65:194206..198644+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig65:194206..198644+ >mRNA_P-littoralis_Contig65.51.1 ID=mRNA_P-littoralis_Contig65.51.1|Name=mRNA_P-littoralis_Contig65.51.1|organism=Pylaiella littoralis U1_48|type=CDS|length=507bp|location=Sequence derived from alignment at P-littoralis_Contig65:194206..198644+ (Pylaiella littoralis U1_48)back to top |