mRNA_P-littoralis_Contig65.39.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig65.39.1 vs. uniprot
Match: A0A6H5K4J8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4J8_9PHAE) HSP 1 Score: 110 bits (275), Expect = 1.780e-28 Identity = 58/91 (63.74%), Postives = 64/91 (70.33%), Query Frame = 1
Query: 1 LAPLVCRKSVLHEGLGVYLVQEHGKSMNGNLVTIFEVPDANGGGGRLKCTCRTPLRWRLPCCDVLAVLRHIDRLDATVAFVDTGYTLTSYR 273
LAPLV K V GLG YLVQEHGKS GN VTI +PD G GG +KCTCR P R+ L C D LAVL+ IDRLD T A +D+GYTL SYR
Sbjct: 3 LAPLVGSKHVKSMGLGTYLVQEHGKSQYGNRVTIV-LPDTEGKGGCVKCTCRVPTRFHLLCQDALAVLKSIDRLDCTRALIDSGYTLASYR 92
BLAST of mRNA_P-littoralis_Contig65.39.1 vs. uniprot
Match: A0A6H5K7B6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7B6_9PHAE) HSP 1 Score: 102 bits (253), Expect = 6.730e-24 Identity = 51/84 (60.71%), Postives = 59/84 (70.24%), Query Frame = 1
Query: 22 KSVLHEGLGVYLVQEHGKSMNGNLVTIFEVPDANGGGGRLKCTCRTPLRWRLPCCDVLAVLRHIDRLDATVAFVDTGYTLTSYR 273
K V GLG YLVQEHGKS GN V I +PD G GGR++CTCR P R+ L C D LAVL+ IDRLD T A +D+GYTL S+R
Sbjct: 50 KHVKSMGLGTYLVQEHGKSQYGNRVIIV-LPDTEGNGGRVECTCRVPTRFHLLCQDALAVLKSIDRLDCTRALIDSGYTLASFR 132
BLAST of mRNA_P-littoralis_Contig65.39.1 vs. uniprot
Match: D7G6Q0_ECTSI (MULE domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Q0_ECTSI) HSP 1 Score: 100 bits (249), Expect = 1.010e-22 Identity = 54/88 (61.36%), Postives = 59/88 (67.05%), Query Frame = 1
Query: 10 LVCRKSVLHEGLGVYLVQEHGKSMNGNLVTIFEVPDANGGGGRLKCTCRTPLRWRLPCCDVLAVLRHIDRLDATVAFVDTGYTLTSYR 273
L K V GLG YLVQEHGKS GN VTI +PD G GGR++CTC P R+ L C D LAVL+ IDRLD T A VD GYTL SYR
Sbjct: 391 LSLHKHVKSLGLGTYLVQEHGKSQYGNRVTIV-LPDTEGKGGRVECTCSVPSRFHLLCQDSLAVLKSIDRLDCTRAHVDGGYTLASYR 477
BLAST of mRNA_P-littoralis_Contig65.39.1 vs. uniprot
Match: A0A6H5K405_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K405_9PHAE) HSP 1 Score: 98.2 bits (243), Expect = 1.400e-22 Identity = 51/88 (57.95%), Postives = 58/88 (65.91%), Query Frame = 1
Query: 10 LVCRKSVLHEGLGVYLVQEHGKSMNGNLVTIFEVPDANGGGGRLKCTCRTPLRWRLPCCDVLAVLRHIDRLDATVAFVDTGYTLTSYR 273
L K V GLG YL QEHGKS GN VTI +PD G GGR++CTCR P R+ C D LAVL+ IDRLD T A +D+ YTL SYR
Sbjct: 75 LSLNKHVKSMGLGTYLAQEHGKSQYGNRVTIV-LPDTEGKGGRVECTCRVPTRFHHLCQDALAVLKSIDRLDCTRALIDSRYTLASYR 161
BLAST of mRNA_P-littoralis_Contig65.39.1 vs. uniprot
Match: A0A6H5K9J4_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9J4_9PHAE) HSP 1 Score: 80.1 bits (196), Expect = 1.460e-15 Identity = 42/68 (61.76%), Postives = 47/68 (69.12%), Query Frame = 1
Query: 4 APLVCRKSVLHEGLGVYLVQEHGKSMNGNLVTIFEVPDANGGGGRLKCTCRTPLRWRLPCCDVLAVLR 207
APLV K V GLG YLVQEHGKS GN VTI +PD G GGR++CTCR P R+ L C D LAVL+
Sbjct: 169 APLVGSKHVKSMGLGTYLVQEHGKSQYGNRVTIV-LPDTEGKGGRVECTCRVPTRFHLLCHDALAVLK 235
BLAST of mRNA_P-littoralis_Contig65.39.1 vs. uniprot
Match: A0A6H5KWZ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWZ7_9PHAE) HSP 1 Score: 73.9 bits (180), Expect = 7.130e-15 Identity = 37/62 (59.68%), Postives = 43/62 (69.35%), Query Frame = 1
Query: 22 KSVLHEGLGVYLVQEHGKSMNGNLVTIFEVPDANGGGGRLKCTCRTPLRWRLPCCDVLAVLR 207
K V GLG YLVQEHGKS GN VTI +PD G GGR++CTCR P R+ L C D +AVL+
Sbjct: 66 KHVKSMGLGTYLVQEHGKSQCGNRVTIV-LPDTEGNGGRVECTCRAPTRFHLLCQDAIAVLK 126
BLAST of mRNA_P-littoralis_Contig65.39.1 vs. uniprot
Match: D7FMJ7_ECTSI (MULE domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMJ7_ECTSI) HSP 1 Score: 77.8 bits (190), Expect = 9.220e-15 Identity = 43/81 (53.09%), Postives = 52/81 (64.20%), Query Frame = 1
Query: 31 LHEGLGVYLVQEHGKSMNGNLVTIFEVPDANGGGGRLKCTCRTPLRWRLPCCDVLAVLRHIDRLDATVAFVDTGYTLTSYR 273
+H G V EHGKS GN VTI +PD G GGR++CTC P R+ L D LAVL+ I+RLD T A VD+G+TL S R
Sbjct: 235 VHGGREVAQPSEHGKSQYGNRVTIV-LPDTEGKGGRVECTCSIPSRFYLLYQDTLAVLKSINRLDCTRALVDSGHTLASNR 314
BLAST of mRNA_P-littoralis_Contig65.39.1 vs. uniprot
Match: A0A6H5KSL9_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSL9_9PHAE) HSP 1 Score: 75.1 bits (183), Expect = 5.630e-14 Identity = 36/64 (56.25%), Postives = 46/64 (71.88%), Query Frame = 1
Query: 82 NGNLVTIFEVPDANGGGGRLKCTCRTPLRWRLPCCDVLAVLRHIDRLDATVAFVDTGYTLTSYR 273
+G VTI +P+ G GGR++CTCR P R+ L C D LAVL+ I+RLD T A +D+GYTL SYR
Sbjct: 19 HGYRVTIV-LPETEGNGGRVECTCRVPTRFHLLCQDALAVLKSINRLDCTRALIDSGYTLASYR 81
BLAST of mRNA_P-littoralis_Contig65.39.1 vs. uniprot
Match: A0A6H5K7Q3_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Q3_9PHAE) HSP 1 Score: 70.5 bits (171), Expect = 2.540e-12 Identity = 36/62 (58.06%), Postives = 42/62 (67.74%), Query Frame = 1
Query: 22 KSVLHEGLGVYLVQEHGKSMNGNLVTIFEVPDANGGGGRLKCTCRTPLRWRLPCCDVLAVLR 207
K V GLG YLVQ HGK+ GN VTI +PD G GGR++CTCR P R+ L C D LAVL+
Sbjct: 261 KHVKSMGLGTYLVQVHGKNQYGNRVTIV-LPDTEGKGGRVECTCRVPTRFHLLCQDALAVLK 321
BLAST of mRNA_P-littoralis_Contig65.39.1 vs. uniprot
Match: A0A6H5K0L7_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0L7_9PHAE) HSP 1 Score: 52.4 bits (124), Expect = 8.160e-6 Identity = 27/74 (36.49%), Postives = 44/74 (59.46%), Query Frame = 1
Query: 52 YLVQEHGKSMNGNLVTIFEVPDANGGGGRLKCTCRTPLRWRLPCCDVLAVLRHIDRLDATVAFVDTGYTLTSYR 273
+ V++ G S GN V + E +GG + CTC R+++PCCD++AV R +++ D +A +D Y L +YR
Sbjct: 242 FTVRKRG-SQYGNRVRL-EFGGTDGGVTLMSCTCGFTTRFKIPCCDIIAVGRVLNKSDEVMASIDPAYHLDTYR 313 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig65.39.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig65.39.1 >prot_P-littoralis_Contig65.39.1 ID=prot_P-littoralis_Contig65.39.1|Name=mRNA_P-littoralis_Contig65.39.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=92bp LAPLVCRKSVLHEGLGVYLVQEHGKSMNGNLVTIFEVPDANGGGGRLKCTback to top mRNA from alignment at P-littoralis_Contig65:143715..145116+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig65.39.1 ID=mRNA_P-littoralis_Contig65.39.1|Name=mRNA_P-littoralis_Contig65.39.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1402bp|location=Sequence derived from alignment at P-littoralis_Contig65:143715..145116+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig65:143715..145116+ >mRNA_P-littoralis_Contig65.39.1 ID=mRNA_P-littoralis_Contig65.39.1|Name=mRNA_P-littoralis_Contig65.39.1|organism=Pylaiella littoralis U1_48|type=CDS|length=276bp|location=Sequence derived from alignment at P-littoralis_Contig65:143715..145116+ (Pylaiella littoralis U1_48)back to top |