mRNA_P-littoralis_Contig65.39.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig65.39.1
Unique NamemRNA_P-littoralis_Contig65.39.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig65.39.1 vs. uniprot
Match: A0A6H5K4J8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4J8_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 1.780e-28
Identity = 58/91 (63.74%), Postives = 64/91 (70.33%), Query Frame = 1
Query:    1 LAPLVCRKSVLHEGLGVYLVQEHGKSMNGNLVTIFEVPDANGGGGRLKCTCRTPLRWRLPCCDVLAVLRHIDRLDATVAFVDTGYTLTSYR 273
            LAPLV  K V   GLG YLVQEHGKS  GN VTI  +PD  G GG +KCTCR P R+ L C D LAVL+ IDRLD T A +D+GYTL SYR
Sbjct:    3 LAPLVGSKHVKSMGLGTYLVQEHGKSQYGNRVTIV-LPDTEGKGGCVKCTCRVPTRFHLLCQDALAVLKSIDRLDCTRALIDSGYTLASYR 92          
BLAST of mRNA_P-littoralis_Contig65.39.1 vs. uniprot
Match: A0A6H5K7B6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7B6_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 6.730e-24
Identity = 51/84 (60.71%), Postives = 59/84 (70.24%), Query Frame = 1
Query:   22 KSVLHEGLGVYLVQEHGKSMNGNLVTIFEVPDANGGGGRLKCTCRTPLRWRLPCCDVLAVLRHIDRLDATVAFVDTGYTLTSYR 273
            K V   GLG YLVQEHGKS  GN V I  +PD  G GGR++CTCR P R+ L C D LAVL+ IDRLD T A +D+GYTL S+R
Sbjct:   50 KHVKSMGLGTYLVQEHGKSQYGNRVIIV-LPDTEGNGGRVECTCRVPTRFHLLCQDALAVLKSIDRLDCTRALIDSGYTLASFR 132          
BLAST of mRNA_P-littoralis_Contig65.39.1 vs. uniprot
Match: D7G6Q0_ECTSI (MULE domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Q0_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 1.010e-22
Identity = 54/88 (61.36%), Postives = 59/88 (67.05%), Query Frame = 1
Query:   10 LVCRKSVLHEGLGVYLVQEHGKSMNGNLVTIFEVPDANGGGGRLKCTCRTPLRWRLPCCDVLAVLRHIDRLDATVAFVDTGYTLTSYR 273
            L   K V   GLG YLVQEHGKS  GN VTI  +PD  G GGR++CTC  P R+ L C D LAVL+ IDRLD T A VD GYTL SYR
Sbjct:  391 LSLHKHVKSLGLGTYLVQEHGKSQYGNRVTIV-LPDTEGKGGRVECTCSVPSRFHLLCQDSLAVLKSIDRLDCTRAHVDGGYTLASYR 477          
BLAST of mRNA_P-littoralis_Contig65.39.1 vs. uniprot
Match: A0A6H5K405_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K405_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 1.400e-22
Identity = 51/88 (57.95%), Postives = 58/88 (65.91%), Query Frame = 1
Query:   10 LVCRKSVLHEGLGVYLVQEHGKSMNGNLVTIFEVPDANGGGGRLKCTCRTPLRWRLPCCDVLAVLRHIDRLDATVAFVDTGYTLTSYR 273
            L   K V   GLG YL QEHGKS  GN VTI  +PD  G GGR++CTCR P R+   C D LAVL+ IDRLD T A +D+ YTL SYR
Sbjct:   75 LSLNKHVKSMGLGTYLAQEHGKSQYGNRVTIV-LPDTEGKGGRVECTCRVPTRFHHLCQDALAVLKSIDRLDCTRALIDSRYTLASYR 161          
BLAST of mRNA_P-littoralis_Contig65.39.1 vs. uniprot
Match: A0A6H5K9J4_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9J4_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 1.460e-15
Identity = 42/68 (61.76%), Postives = 47/68 (69.12%), Query Frame = 1
Query:    4 APLVCRKSVLHEGLGVYLVQEHGKSMNGNLVTIFEVPDANGGGGRLKCTCRTPLRWRLPCCDVLAVLR 207
            APLV  K V   GLG YLVQEHGKS  GN VTI  +PD  G GGR++CTCR P R+ L C D LAVL+
Sbjct:  169 APLVGSKHVKSMGLGTYLVQEHGKSQYGNRVTIV-LPDTEGKGGRVECTCRVPTRFHLLCHDALAVLK 235          
BLAST of mRNA_P-littoralis_Contig65.39.1 vs. uniprot
Match: A0A6H5KWZ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWZ7_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 7.130e-15
Identity = 37/62 (59.68%), Postives = 43/62 (69.35%), Query Frame = 1
Query:   22 KSVLHEGLGVYLVQEHGKSMNGNLVTIFEVPDANGGGGRLKCTCRTPLRWRLPCCDVLAVLR 207
            K V   GLG YLVQEHGKS  GN VTI  +PD  G GGR++CTCR P R+ L C D +AVL+
Sbjct:   66 KHVKSMGLGTYLVQEHGKSQCGNRVTIV-LPDTEGNGGRVECTCRAPTRFHLLCQDAIAVLK 126          
BLAST of mRNA_P-littoralis_Contig65.39.1 vs. uniprot
Match: D7FMJ7_ECTSI (MULE domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMJ7_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 9.220e-15
Identity = 43/81 (53.09%), Postives = 52/81 (64.20%), Query Frame = 1
Query:   31 LHEGLGVYLVQEHGKSMNGNLVTIFEVPDANGGGGRLKCTCRTPLRWRLPCCDVLAVLRHIDRLDATVAFVDTGYTLTSYR 273
            +H G  V    EHGKS  GN VTI  +PD  G GGR++CTC  P R+ L   D LAVL+ I+RLD T A VD+G+TL S R
Sbjct:  235 VHGGREVAQPSEHGKSQYGNRVTIV-LPDTEGKGGRVECTCSIPSRFYLLYQDTLAVLKSINRLDCTRALVDSGHTLASNR 314          
BLAST of mRNA_P-littoralis_Contig65.39.1 vs. uniprot
Match: A0A6H5KSL9_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSL9_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 5.630e-14
Identity = 36/64 (56.25%), Postives = 46/64 (71.88%), Query Frame = 1
Query:   82 NGNLVTIFEVPDANGGGGRLKCTCRTPLRWRLPCCDVLAVLRHIDRLDATVAFVDTGYTLTSYR 273
            +G  VTI  +P+  G GGR++CTCR P R+ L C D LAVL+ I+RLD T A +D+GYTL SYR
Sbjct:   19 HGYRVTIV-LPETEGNGGRVECTCRVPTRFHLLCQDALAVLKSINRLDCTRALIDSGYTLASYR 81          
BLAST of mRNA_P-littoralis_Contig65.39.1 vs. uniprot
Match: A0A6H5K7Q3_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Q3_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 2.540e-12
Identity = 36/62 (58.06%), Postives = 42/62 (67.74%), Query Frame = 1
Query:   22 KSVLHEGLGVYLVQEHGKSMNGNLVTIFEVPDANGGGGRLKCTCRTPLRWRLPCCDVLAVLR 207
            K V   GLG YLVQ HGK+  GN VTI  +PD  G GGR++CTCR P R+ L C D LAVL+
Sbjct:  261 KHVKSMGLGTYLVQVHGKNQYGNRVTIV-LPDTEGKGGRVECTCRVPTRFHLLCQDALAVLK 321          
BLAST of mRNA_P-littoralis_Contig65.39.1 vs. uniprot
Match: A0A6H5K0L7_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0L7_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 8.160e-6
Identity = 27/74 (36.49%), Postives = 44/74 (59.46%), Query Frame = 1
Query:   52 YLVQEHGKSMNGNLVTIFEVPDANGGGGRLKCTCRTPLRWRLPCCDVLAVLRHIDRLDATVAFVDTGYTLTSYR 273
            + V++ G S  GN V + E    +GG   + CTC    R+++PCCD++AV R +++ D  +A +D  Y L +YR
Sbjct:  242 FTVRKRG-SQYGNRVRL-EFGGTDGGVTLMSCTCGFTTRFKIPCCDIIAVGRVLNKSDEVMASIDPAYHLDTYR 313          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig65.39.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5K4J8_9PHAE1.780e-2863.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7B6_9PHAE6.730e-2460.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G6Q0_ECTSI1.010e-2261.36MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5K405_9PHAE1.400e-2257.95Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9J4_9PHAE1.460e-1561.76MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KWZ7_9PHAE7.130e-1559.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FMJ7_ECTSI9.220e-1553.09MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KSL9_9PHAE5.630e-1456.25SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K7Q3_9PHAE2.540e-1258.06MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5K0L7_9PHAE8.160e-636.49MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig65contigP-littoralis_Contig65:143715..145116 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size277
Hectar predicted targeting categoryother localisation
Exons2
Cds size276
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791353.9305995-CDS-P-littoralis_Contig65:143714..1439221680791353.9305995-CDS-P-littoralis_Contig65:143714..143922Pylaiella littoralis U1_48CDSP-littoralis_Contig65 143715..143922 +
1680791353.9418776-CDS-P-littoralis_Contig65:145048..1451161680791353.9418776-CDS-P-littoralis_Contig65:145048..145116Pylaiella littoralis U1_48CDSP-littoralis_Contig65 145049..145116 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig65.39.1prot_P-littoralis_Contig65.39.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig65 143715..145116 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig65.39.1

>prot_P-littoralis_Contig65.39.1 ID=prot_P-littoralis_Contig65.39.1|Name=mRNA_P-littoralis_Contig65.39.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=92bp
LAPLVCRKSVLHEGLGVYLVQEHGKSMNGNLVTIFEVPDANGGGGRLKCT
CRTPLRWRLPCCDVLAVLRHIDRLDATVAFVDTGYTLTSYRE
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mRNA from alignment at P-littoralis_Contig65:143715..145116+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig65.39.1 ID=mRNA_P-littoralis_Contig65.39.1|Name=mRNA_P-littoralis_Contig65.39.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1402bp|location=Sequence derived from alignment at P-littoralis_Contig65:143715..145116+ (Pylaiella littoralis U1_48)
TTGGCTCCCCTCGTGTGCAGGAAATCTGTCCTGCATGAGGGCCTCGGGGT GTATCTGGTCCAGGAACACGGAAAGAGCATGAACGGCAACCTCGTGACGA TCTTCGAGGTGCCGGACGCCAACGGGGGAGGTGGTCGCCTCAAGTGCACC TGCCGCACCCCTTTAAGGTGGAGGCTTCCTTGCTGCGACGTACTCGCGGT GTTGAGACGTGAGTTTTTTCGGGGGCCTTCTTTCGGGGTAGGACACTTAG GGGCCTGAATGCCATTGTGTGGGTCTCTCAGCAGCAGTAGCTTCTGCTGC GCCTGCTGTTTTCTGTCTGCTGTGCCATTGTCTCTTGGTTGTCTTTTCGT TTTTTTCTTTAGTTGTCATCTTGCCTACGAGAAAAATGGCCGTTTGCTTG TTGGGTATATGGAACCACGAAGGGGAAGCCCGCAGCGAATAACCCGGTGT TACCTCAGGTTGAATGCTGTGGTAATGGTTTCATTTTGCGAGTTTGAGTG TGGCATGTACGCGGTCCCGCCATAGTGGGCGACACTTCTCTGTGATCTAC CGTCTGAACAAACTAATGTACACCAGTCATCTCCGTTCCATCCGCCGTGA GCTGTATGGCTCGACGACTTCAGGCAACTAAACGGAAGCTGTGTCGTTTT TGTCACCGAGGAAACACCACAGCTGCTTGTTGGCTTCGTTTCTGTCTCAT GGCGTCAATTGCCTCGGTTTTCTTCTTTCCCTTTCCTTTCCTCCCTGTCA AAACGCAATACTCGTTGGTTATAGTCACAGGCGTCGACTCTTCCCCCCCC CCTCCCCCTTCGTCATGTCGCGAAAAAATGGACGAGCATGTACAGCGATG ACCATCAGACTTGGCCGCTTGAAAGTTTGCACCTCCACAACGGGCAAAGC TCCCCCCCCCCCCTCACACCACGACCCTCCCTCTTCCCATCGGCTCCTCG GCCCAAAAAACGTTGGGCGGAAAGTATGCAACCACCGGAGTACTTGTGTT CCTCGTGTGTACCCCATCCCTACCCGCAGTAGAACATTGAAATCTACCGT TGTTTAGTTTTGGCCTAGATGCACAAAGGGAATTTTTTGCACCCGCTGCT GTTCAAGGGCATTGCTTCCACGTTTTTTGATTGCCAACCGTAATGCACCC AGTACAAACAACCGGGTGGGACGTTCTTTGAATCGGGAAAATCGAGCATG TTATTTCGAGGGTTTCCAGCTGGCGGACTATGAGTGTGCACCTTTGACAT GATGGTGACATGACCTACAGTTTATTTTGGGTCGCCCTTCGCCCACCTTC GCCCACCTTGCCCCTTTTCTTCAAAACTTGGCAGACATCGACAGGCTGGA TGCCACCGTGGCGTTTGTTGACACCGGGTATACCCTGACATCCTACCGGG AG
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Coding sequence (CDS) from alignment at P-littoralis_Contig65:143715..145116+

>mRNA_P-littoralis_Contig65.39.1 ID=mRNA_P-littoralis_Contig65.39.1|Name=mRNA_P-littoralis_Contig65.39.1|organism=Pylaiella littoralis U1_48|type=CDS|length=276bp|location=Sequence derived from alignment at P-littoralis_Contig65:143715..145116+ (Pylaiella littoralis U1_48)
TTGGCTCCCCTCGTGTGCAGGAAATCTGTCCTGCATGAGGGCCTCGGGGT
GTATCTGGTCCAGGAACACGGAAAGAGCATGAACGGCAACCTCGTGACGA
TCTTCGAGGTGCCGGACGCCAACGGGGGAGGTGGTCGCCTCAAGTGCACC
TGCCGCACCCCTTTAAGGTGGAGGCTTCCTTGCTGCGACGTACTCGCGGT
GTTGAGACACATCGACAGGCTGGATGCCACCGTGGCGTTTGTTGACACCG
GGTATACCCTGACATCCTACCGGGAG
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