mRNA_P-littoralis_Contig65.137.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig65.137.1
Unique NamemRNA_P-littoralis_Contig65.137.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig65.137.1 vs. uniprot
Match: D8LQH0_ECTSI (Chloride channel protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQH0_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 6.450e-25
Identity = 51/61 (83.61%), Postives = 54/61 (88.52%), Query Frame = 3 
Query:    3 YASAHRAYIMFRTLGLRHLVVVNHYNEVMGMITRENLLPEHFDAGGAYSIIRHDHGKISEA 185
            +ASAHRAYIMFRTLGLRHLVVVNHYNEVMGMITRENLLPEHF AGGAYS  +  H K+S A
Sbjct:  428 HASAHRAYIMFRTLGLRHLVVVNHYNEVMGMITRENLLPEHFGAGGAYSRTQDVHDKLSAA 488
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BLAST of mRNA_P-littoralis_Contig65.137.1 vs. uniprot
Match: A0A836CM41_9STRA (Chloride channel protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM41_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 2.770e-12
Identity = 32/39 (82.05%), Postives = 37/39 (94.87%), Query Frame = 3 
Query:    3 YASAHRAYIMFRTLGLRHLVVVNHYNEVMGMITRENLLP 119
            +ASAHRAY MFRTLGLRHL VVNH+NEV+G+I+RENLLP
Sbjct:  583 HASAHRAYEMFRTLGLRHLTVVNHFNEVVGIISRENLLP 621
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BLAST of mRNA_P-littoralis_Contig65.137.1 vs. uniprot
Match: A0A553P2Z1_TIGCA (Chloride channel protein n=1 Tax=Tigriopus californicus TaxID=6832 RepID=A0A553P2Z1_TIGCA)

HSP 1 Score: 58.5 bits (140), Expect = 1.760e-8
Identity = 28/59 (47.46%), Postives = 42/59 (71.19%), Query Frame = 3 
Query:    9 SAHRAYIMFRTLGLRHLVVVNHYNEVMGMITRENLLPEHFDAGGAYSIIRHDHGKISEA 185
            S HRAYI+FRTLGLRH+ VV+H N+V G++TR++L+    +      ++RH H K+S +
Sbjct:  877 SLHRAYILFRTLGLRHMTVVSHTNQVEGILTRKDLMGFAIEER-LERLLRHPHRKLSRS 934
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BLAST of mRNA_P-littoralis_Contig65.137.1 vs. uniprot
Match: A0A7S1D5H2_CYCTE (Chloride channel protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D5H2_CYCTE)

HSP 1 Score: 57.8 bits (138), Expect = 3.240e-8
Identity = 27/39 (69.23%), Postives = 34/39 (87.18%), Query Frame = 3 
Query:    6 ASAHRAYIMFRTLGLRHLVVVNHYNEVMGMITRENLLPE 122
            AS  R Y +FRTLGLR LVVVNH+N+V+G+ITR++LLPE
Sbjct:  376 ASIQRTYRLFRTLGLRFLVVVNHHNQVVGIITRKDLLPE 414
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BLAST of mRNA_P-littoralis_Contig65.137.1 vs. uniprot
Match: A0A6P8HNZ7_ACTTE (Chloride channel protein n=2 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8HNZ7_ACTTE)

HSP 1 Score: 57.4 bits (137), Expect = 4.490e-8
Identity = 30/57 (52.63%), Postives = 38/57 (66.67%), Query Frame = 3 
Query:    9 SAHRAYIMFRTLGLRHLVVVNHYNEVMGMITRENLLPEHFDAGGAYSIIRHDHGKIS 179
            S HR YI+FRTLGLRHLVVV+  N V G+ITR++L+  H +      +  HDHG  S
Sbjct:  772 SLHRTYIIFRTLGLRHLVVVSKSNRVKGIITRKDLMGFHLEERILQQL--HDHGPTS 826
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BLAST of mRNA_P-littoralis_Contig65.137.1 vs. uniprot
Match: A0A7R9VRQ8_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VRQ8_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 7.960e-8
Identity = 26/39 (66.67%), Postives = 32/39 (82.05%), Query Frame = 3 
Query:    6 ASAHRAYIMFRTLGLRHLVVVNHYNEVMGMITRENLLPE 122
            AS  R Y +FRTLGLR L VVNH N+V+G+ITR++LLPE
Sbjct:   61 ASIQRTYRLFRTLGLRFLCVVNHNNQVVGIITRKDLLPE 99
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BLAST of mRNA_P-littoralis_Contig65.137.1 vs. uniprot
Match: UPI00160537E6 (chloride channel protein C-like n=1 Tax=Folsomia candida TaxID=158441 RepID=UPI00160537E6)

HSP 1 Score: 56.6 bits (135), Expect = 8.270e-8
Identity = 25/36 (69.44%), Postives = 32/36 (88.89%), Query Frame = 3 
Query:    9 SAHRAYIMFRTLGLRHLVVVNHYNEVMGMITRENLL 116
            S HRAY++FR LGLRHLVVV+ YNEV G++TR++LL
Sbjct:  371 SLHRAYVVFRDLGLRHLVVVDEYNEVQGIVTRKDLL 406
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BLAST of mRNA_P-littoralis_Contig65.137.1 vs. uniprot
Match: A0A226EGE1_FOLCA (Chloride channel protein n=2 Tax=Folsomia candida TaxID=158441 RepID=A0A226EGE1_FOLCA)

HSP 1 Score: 56.6 bits (135), Expect = 8.500e-8
Identity = 25/36 (69.44%), Postives = 32/36 (88.89%), Query Frame = 3 
Query:    9 SAHRAYIMFRTLGLRHLVVVNHYNEVMGMITRENLL 116
            S HRAY++FR LGLRHLVVV+ YNEV G++TR++LL
Sbjct:  764 SLHRAYVVFRDLGLRHLVVVDEYNEVQGIVTRKDLL 799
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BLAST of mRNA_P-littoralis_Contig65.137.1 vs. uniprot
Match: A0A8J1UR58_OWEFU (Chloride channel protein n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1UR58_OWEFU)

HSP 1 Score: 56.2 bits (134), Expect = 1.140e-7
Identity = 24/36 (66.67%), Postives = 32/36 (88.89%), Query Frame = 3 
Query:    9 SAHRAYIMFRTLGLRHLVVVNHYNEVMGMITRENLL 116
            S HR YI+FRTLGLRHL V NH+N+V+G+ITR++L+
Sbjct:  469 SLHRTYIIFRTLGLRHLTVTNHHNKVVGIITRKDLM 504
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BLAST of mRNA_P-littoralis_Contig65.137.1 vs. uniprot
Match: A0A7S2XUS9_9STRA (Chloride channel protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUS9_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 1.560e-7
Identity = 23/39 (58.97%), Postives = 34/39 (87.18%), Query Frame = 3 
Query:    9 SAHRAYIMFRTLGLRHLVVVNHYNEVMGMITRENLLPEH 125
            S  R Y +FRTLGLRH++V+N++N+V+GMITR++LL +H
Sbjct:  559 SVERTYRLFRTLGLRHIIVINNHNQVVGMITRKDLLADH 597
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig65.137.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQH0_ECTSI6.450e-2583.61Chloride channel protein n=1 Tax=Ectocarpus silicu... [more]
A0A836CM41_9STRA2.770e-1282.05Chloride channel protein n=1 Tax=Tribonema minus T... [more]
A0A553P2Z1_TIGCA1.760e-847.46Chloride channel protein n=1 Tax=Tigriopus califor... [more]
A0A7S1D5H2_CYCTE3.240e-869.23Chloride channel protein n=1 Tax=Cyclophora tenuis... [more]
A0A6P8HNZ7_ACTTE4.490e-852.63Chloride channel protein n=2 Tax=Actinia tenebrosa... [more]
A0A7R9VRQ8_9STRA7.960e-866.67Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
UPI00160537E68.270e-869.44chloride channel protein C-like n=1 Tax=Folsomia c... [more]
A0A226EGE1_FOLCA8.500e-869.44Chloride channel protein n=2 Tax=Folsomia candida ... [more]
A0A8J1UR58_OWEFU1.140e-766.67Chloride channel protein n=1 Tax=Owenia fusiformis... [more]
A0A7S2XUS9_9STRA1.560e-758.97Chloride channel protein n=1 Tax=Fibrocapsa japoni... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig65contigP-littoralis_Contig65:689604..689791 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LQH0
Preferred nameCLCN6
PFAMsCBS,Voltage_CLC
Model size188
Max annot lvl2759|Eukaryota
KEGG koko:K05015,ko:K05016
KEGG TC2.A.49.3.3,2.A.49.3.4
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000323,GO:0003008,GO:0003674,GO:0005215,GO:0005216,GO:0005244,GO:0005247,GO:0005253,GO:0005254,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005764,GO:0005765,GO:0005768,GO:0005770,GO:0005773,GO:0005774,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006821,GO:0006884,GO:0007039,GO:0007154,GO:0007165,GO:0007600,GO:0008150,GO:0008152,GO:0008308,GO:0008361,GO:0008509,GO:0009056,GO:0009057,GO:0009268,GO:0009605,GO:0009612,GO:0009628,GO:0009987,GO:0010008,GO:0012505,GO:0015075,GO:0015103,GO:0015108,GO:0015267,GO:0015291,GO:0015297,GO:0015318,GO:0015698,GO:0016020,GO:0016021,GO:0016043,GO:0019538,GO:0019725,GO:0022803,GO:0022804,GO:0022832,GO:0022836,GO:0022838,GO:0022839,GO:0022857,GO:0023052,GO:0030163,GO:0031090,GO:0031224,GO:0031410,GO:0031974,GO:0031981,GO:0031982,GO:0032501,GO:0032535,GO:0034220,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0050794,GO:0050877,GO:0050896,GO:0050954,GO:0050975,GO:0051179,GO:0051234,GO:0051716,GO:0055085,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071840,GO:0090066,GO:0097708,GO:0098588,GO:0098656,GO:0098660,GO:0098661,GO:0098805,GO:0098852,GO:1901564,GO:1901565,GO:1901575,GO:1902476,GO:1905146
Exons1
Evalue1.82e-20
EggNOG OGsCOG0038@1|root,KOG0474@2759|Eukaryota
DescriptionChloride Channel
Cds size159
COG categoryP
BRITEko00000,ko01009,ko04040
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791361.0248575-UTR-P-littoralis_Contig65:689603..6896321680791361.0248575-UTR-P-littoralis_Contig65:689603..689632Pylaiella littoralis U1_48UTRP-littoralis_Contig65 689604..689632 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791361.0388765-CDS-P-littoralis_Contig65:689632..6897911680791361.0388765-CDS-P-littoralis_Contig65:689632..689791Pylaiella littoralis U1_48CDSP-littoralis_Contig65 689633..689791 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig65.137.1prot_P-littoralis_Contig65.137.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig65 689633..689791 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig65.137.1

>prot_P-littoralis_Contig65.137.1 ID=prot_P-littoralis_Contig65.137.1|Name=mRNA_P-littoralis_Contig65.137.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=53bp
MFRTLGLRHLVVVNHYNEVMGMITRENLLPEHFDAGGAYSIIRHDHGKIS
EA*
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mRNA from alignment at P-littoralis_Contig65:689604..689791+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig65.137.1 ID=mRNA_P-littoralis_Contig65.137.1|Name=mRNA_P-littoralis_Contig65.137.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=188bp|location=Sequence derived from alignment at P-littoralis_Contig65:689604..689791+ (Pylaiella littoralis U1_48)
AATATGCCTCCGCCCATCGGGCGTACATCATGTTCCGCACGCTGGGTCTA
CGACACCTCGTGGTGGTGAACCACTACAACGAGGTTATGGGCATGATAAC
CAGGGAGAATCTGTTGCCGGAACACTTCGACGCCGGTGGAGCATACTCTA
TTATCCGTCACGACCACGGCAAAATATCCGAGGCGTAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig65:689604..689791+

>mRNA_P-littoralis_Contig65.137.1 ID=mRNA_P-littoralis_Contig65.137.1|Name=mRNA_P-littoralis_Contig65.137.1|organism=Pylaiella littoralis U1_48|type=CDS|length=159bp|location=Sequence derived from alignment at P-littoralis_Contig65:689604..689791+ (Pylaiella littoralis U1_48)
ATGTTCCGCACGCTGGGTCTACGACACCTCGTGGTGGTGAACCACTACAA
CGAGGTTATGGGCATGATAACCAGGGAGAATCTGTTGCCGGAACACTTCG
ACGCCGGTGGAGCATACTCTATTATCCGTCACGACCACGGCAAAATATCC
GAGGCGTAG
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