mRNA_P-littoralis_Contig65.135.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig65.135.1
Unique NamemRNA_P-littoralis_Contig65.135.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig65.135.1 vs. uniprot
Match: D8LQG9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQG9_ECTSI)

HSP 1 Score: 572 bits (1475), Expect = 1.060e-201
Identity = 292/369 (79.13%), Postives = 318/369 (86.18%), Query Frame = 1
Query:   61 MREMANKSSPSPTPLGRQRRLSLYERANS-IIHISNDGKGSGDHN----VPPVRSDRSSSSALV-KGRDIDTTVSEERTSVQDKKSALGRDKYNTVLRDWLMHVVEKDDPNNAEDVQNIWATARRRRRLAYKTFEAADYELYDSKVWHTHKQDAADSNHRGTKGSRRQRKLVGRWLTIALGVAVGLTGCFVTFFTEWIIHAKLHFIAHIIEEHEGESAIKRYGTAFGWLWFINSLLTAGAFSLVWYQPWSNGSGIPETKCVLNGVAIPQVLAPSTLVTKVLGVILGVASGLPVGKEGPMIHAGAAIGGVIANVPGIPCLAEFRNDRDRRDLAAMGTAAGVAAAFHTPIGGVLFTLEEGASFWTTFLTWR 1149
            MRE A  S   PTPLG+ RRLSL+ERANS II+ SN+GKG   +N    VP  R DRS S  +V  GRDI+    E+RT++ +  S  GRDKYNTVLRDWLMHVVEKDD  +AE VQ+IWATARRRRRLA+KTFEAADYELYDSKVWHTHKQDAA++N  GTKGS+R RKLVGR LT+ALG+AVGLTGCFVTFFTEWI+HAKLHFIAHIIEEHEGES   RYGTAF WLWFINSLLT GAF +VWYQPWSNGSGIPETKC+LNGV+IPQVLAPSTLVTKV GVILGVASGLP+GKEGPMIHAGAAIGG IAN+PGIP +AEFRNDRDRRDLAAMGTAAGVAAAF TPIGGVLF LEEGASFWTTFLTWR
Sbjct:    1 MREAAQPSDADPTPLGQHRRLSLFERANSTIIYSSNEGKGGDGNNSEDSVPHARCDRSKSGVVVVNGRDINAIGLEDRTTLINGDSTRGRDKYNTVLRDWLMHVVEKDDQQDAEQVQSIWATARRRRRLAHKTFEAADYELYDSKVWHTHKQDAANNNRGGTKGSKRHRKLVGRSLTLALGIAVGLTGCFVTFFTEWIVHAKLHFIAHIIEEHEGESDFTRYGTAFAWLWFINSLLTVGAFGMVWYQPWSNGSGIPETKCLLNGVSIPQVLAPSTLVTKVFGVILGVASGLPIGKEGPMIHAGAAIGGGIANIPGIPGVAEFRNDRDRRDLAAMGTAAGVAAAFRTPIGGVLFALEEGASFWTTFLTWR 369          
BLAST of mRNA_P-littoralis_Contig65.135.1 vs. uniprot
Match: A0A836CM41_9STRA (Chloride channel protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM41_9STRA)

HSP 1 Score: 234 bits (598), Expect = 4.030e-66
Identity = 120/211 (56.87%), Postives = 158/211 (74.88%), Query Frame = 1
Query:  781 QPWSNGSGIPETKCVLNGVAIPQVLAPSTLVTKVLGVILGVASGLPVGKEGPMIHAGAAIGGVIANVPG-IPCLAEFRNDRDRRDLAAMGTAAGVAAAFHTPIGGVLFTLEEGASFWTTFLTWRSFAAAVVTVVVYYLV-FQGTHMFDEPLTASDMFLFGEFQDS-DSSFFMWELSVFALIAALGGLIGAGFVAWSKRMALFRARNLAGAK 1404
            +PWS GSGIPE KCVLNG+ I Q+L+P T++ KV+GVI  +ASGLPVGKEGPMIHAGAAIG  +A  P  I  L+EFRNDRD+RD AAMGTAAGVA+AF TPIGGVLF +EEGAS+W + LTWR+F AA V +V  YL+  +G  +  +PL + DMF+FG+F  + D+ F+ WEL +F  +  LGGL+G  F+A +K++ ++R   L  ++
Sbjct:   20 EPWSAGSGIPEAKCVLNGINITQILSPRTVLCKVVGVIFALASGLPVGKEGPMIHAGAAIGANVAIGPRCIKFLSEFRNDRDKRDFAAMGTAAGVASAFRTPIGGVLFAIEEGASYWNSELTWRAFTAACVAIVTVYLLRSRGLSLLTDPLDSHDMFIFGQFSSATDTDFYFWELIIFTAMGVLGGLMGVCFIAANKQLNVWRRARLGSSR 230          
BLAST of mRNA_P-littoralis_Contig65.135.1 vs. uniprot
Match: A0A8J2SFY8_9STRA (Chloride channel protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SFY8_9STRA)

HSP 1 Score: 213 bits (541), Expect = 2.890e-57
Identity = 142/351 (40.46%), Postives = 197/351 (56.13%), Query Frame = 1
Query:  415 RRRRLAY--KTFEAADYELYDSKVWHTHKQDAADSNHRGTKGSRRQRKLVGRW-LTIALGVAVGLTGCFVTFFTEWIIHAKLHFIAHIIE-EHEGESAIKRYGTAFGWLWFINSLLTAGAFSLVWYQPWSNGSGIPETKCVLNGVAIPQVLAPSTLVTKVLGVILGVASGLPVGKEGPMIHAGAAIGGVIAN-------VPGIPCLAEFRNDRDRRDLAAMGTAAGVAAAFHTPIGGVLFTLEEGASFWTTFLTWRSFAAAVVTVVVYYLVFQGTHMFDEPLTASDMFLFGEF----QDSDSSFFMWELSVFALIAALGGLIGAGFVAWSKRMALFRARNLAGAKRRFIEA 1422
            RR RLA   K  E+ ++   +++VW T K       +R    +     +  RW LT  +GV  GL G F+TFFT  +   K   +  +++ E EG     R  + F +L F N L  + A   V+ +P S GSGIPE KC LNG+ +P+++   TL  K  GV+  VA+ LPVGKEGPMIH+G+ IG  +A          G   + EFR+D ++RD  A G AAGVA AF  PIGGVLF LEEGASFW+T LTWR+F   ++T+   Y+V     ++     ++ MF FGEF     D  ++F +WEL +F  + ALGGL GA F   +KR+  +R R+ A    R +EA
Sbjct:   33 RRARLATWSKLPESLNFTTEENEVWRT-KHAQLQYTNRNRWWTSHNAVVFKRWVLTFIIGVLAGLVGTFITFFTRKLTDYKFEKVRRVMDAEDEGTY---RGSSFFCYLGF-NLLYVSVAILCVYIEPVSAGSGIPEVKCYLNGINVPRIVRVRTLFCKAFGVLFSVAAALPVGKEGPMIHSGSVIGASLAQGTRGLFGTLGDTRVLEFRSDPEKRDFVACGAAAGVATAFGAPIGGVLFALEEGASFWSTQLTWRAFFCGMITIYTLYVVRTSEDLWGSA-DSTKMFSFGEFTYKTSDGKANFSVWELLLFTALGALGGLAGALFNHLNKRLTQWRMRHCASKALRALEA 377          
BLAST of mRNA_P-littoralis_Contig65.135.1 vs. uniprot
Match: F0Y0N4_AURAN (Chloride channel protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y0N4_AURAN)

HSP 1 Score: 212 bits (539), Expect = 3.190e-57
Identity = 135/332 (40.66%), Postives = 189/332 (56.93%), Query Frame = 1
Query:  391 QNIWATARRRRRLA-YKTF-EAADYELYDSKVWHTHKQDAADSNHRGTKGSRRQRKLVGRW-LTIALGVAVGLTGCFVTFFTEWIIHAKLHFIAHIIEEHEGESAIKRYGTAFGWLWFINSLLTAGAFSLVWYQPWSNGSGIPETKCVLNGVAIPQVLAPSTLVTKVLGVILGVASGLPVGKEGPMIHAGAAIGGVIANVPGIPC-------LAEFRNDRDRRDLAAMGTAAGVAAAFHTPIGGVLFTLEEGASFWTTFLTWRSFAAAVVTVVVYYLVFQGTHMFDEPLTASDMFLFGEF---QDSDSSFFMWELSVFALIAALGGLIGAGF 1347
            ++I    RRR+RLA +KT  E+ ++ + +++VW T KQ      +R    +        RW LT+ +GV  G+ G F+T+FT++    K   +  +++  E    + R    F +L F N      A  +VW +P S GSGIPE KC LNG+ IP+++   TL  K LGV+  VA  LPVGKEGPMIH+G+ I   +A              + EFR D ++RD  A G AAGVA AF  PIGGVLF LEEGASFW+T LTWR F   ++T+   Y+V + T        ++ MF FGEF   +D  ++F +WEL +F ++ ALGGL GA F
Sbjct:   28 ESINPGVRRRQRLASWKTVPESLNFTVEENEVWRT-KQAQLQYTNRNRWWTSSTSTTFKRWVLTMVVGVLTGVVGIFITYFTQYFTRIKFAAVRDVMDR-EAAGDLARGAAFFAYLGF-NVFFVCVATLMVWIEPVSAGSGIPEVKCYLNGINIPRIVRFRTLACKALGVLFSVAGALPVGKEGPMIHSGSVIAAALAQGTRSTSAFGTDWRVLEFRTDPEKRDFVACGAAAGVATAFGAPIGGVLFALEEGASFWSTALTWRCFFCGMITIYTLYVV-RNTENLWGSADSTKMFSFGEFTSFRDGMANFSVWELLLFIVLGALGGLTGALF 355          
BLAST of mRNA_P-littoralis_Contig65.135.1 vs. uniprot
Match: A0A7S3NPJ8_9STRA (Chloride channel protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NPJ8_9STRA)

HSP 1 Score: 213 bits (541), Expect = 5.360e-57
Identity = 135/340 (39.71%), Postives = 202/340 (59.41%), Query Frame = 1
Query:  412 RRRRRLAYKTF-EAADYELYDSKVWHTHKQDAADSNHRGTKGSRRQRKLVGRW-LTIALGVAVGLTGCFVTFFTEWIIHAKLHFIAHIIEEHEGESAIKRYGTAFG-WLWFINSLLTAGAFSLVWYQPWSNGSGIPETKCVLNGVAIPQVLAPSTLVTKVLGVILGVASGLPVGKEGPMIHAGAAIGGVIANVPGIPCLA---------EFRNDRDRRDLAAMGTAAGVAAAFHTPIGGVLFTLEEGASFWTTFLTWRSFAAAVVTVVVYYLVFQGTHMFDEPLTASDMFLFGEF---QDSDSSFFMWELSVFALIAALGGLIGAGFVAWSKRMALFRAR 1386
            RRRR +A++   E+ ++   +++VW T KQ      +RG   +     +  RW LT  +G+    TG F+T+FT++    K   +  I+E+ +   A  R G+AF  WL F N L  + A  +V+ +P + GSGIPE KC LNG+ IP+++   TL  K LGV+  V++ LPVGKEGPMIH+G+ I   +A   G   ++         EFR+D ++RD  A G AAGVA AF  PIGGVLF LEEGASFW+T LTWR+F A+++T+   Y+V    + +     ++ MF FGEF   +   ++F +WEL +F ++  LGGL GA F   ++R+ + R++
Sbjct:   98 RRRRLVAWRAIPESLNFIDEENEVWRT-KQAQLQYTNRGRWWTSASSTVFKRWALTFIVGMLTAFTGIFITYFTQYFTAIKFKAVKQIMEKEQIGDA--RTGSAFFVWLGF-NLLFASFATLMVYIEPVAAGSGIPEVKCYLNGINIPRIVRFQTLACKALGVLFSVSAALPVGKEGPMIHSGSVIAAALAQ--GTRSISIFGHDWRILEFRSDPEKRDFVACGAAAGVATAFGAPIGGVLFALEEGASFWSTQLTWRAFFASMITIYTLYVVRNSENNWGTA-ASTKMFSFGEFTSFEQGKANFSVWELLLFIVVGILGGLSGAIFNGMNRRLTVLRSK 430          
BLAST of mRNA_P-littoralis_Contig65.135.1 vs. uniprot
Match: D8LDY8_ECTSI (Phatr1_ua_kg.chr_17000030 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDY8_ECTSI)

HSP 1 Score: 196 bits (499), Expect = 5.590e-54
Identity = 121/295 (41.02%), Postives = 175/295 (59.32%), Query Frame = 1
Query:  568 LTIALGVAVGLTGCFVTFFTEWIIHAKLHFIAHIIEEHEGESAIKRYGTAFGWLWFINSLLTAGAFSLVWYQPWSNGSGIPETKCVLNGVAIPQVLAPSTLVTKVLGVILGVASGLPVGKEGPMIHAGAAIGGVIA----NVPGIPC----LAEFRNDRDRRDLAAMGTAAGVAAAFHTPIGGVLFTLEEGASFWTTFLTWRSFAAAVVTVVVYYLVFQGTHMFDEPLTASDMFLFGEFQDSDS---SFFMWELSVFALIAALGGLIGAGFVAWSKRMALFRARNLAGAKRRFIE 1419
            +T+ +G   GL   FVTF T+ +++ K   +   +    G S       AF  +   N      A  LVW +P + GSGIPE K  LNG+ +P+V+   TL+ KVLGV+  VA+GLP GKEGPM+H+G+ +   I+    NV G         +FRNDR++RD  A G AAGVAAAF  PIGGVLF+LEEGASFW+T LTWR+F  A++TV   Y +    +++ +      MF FGEF + ++   +F +WEL +F L+  +GGLIGA F   ++R++ +R +++     R +E
Sbjct:    1 MTLIVGALTGLIAVFVTFCTKTLLNVKFTPVYTALHIAGGPS-----WRAFLVMLGFNLSYVTVANGLVWLEPLAAGSGIPEIKSFLNGIDLPRVVRVKTLLCKVLGVMFSVAAGLPAGKEGPMVHSGSVVAAGISQGKSNVLGFDTSFSKFQDFRNDREKRDFVACGAAAGVAAAFGAPIGGVLFSLEEGASFWSTKLTWRAFFCAMMTVFTLYAIKSTQNLWGQQ-DLYYMFSFGEFDELEAGQGNFSVWELWLFILVGCMGGLIGACFNRMNQRLSTWRRKHVCTPFLRLME 289          
BLAST of mRNA_P-littoralis_Contig65.135.1 vs. uniprot
Match: A0A7S4J0F6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J0F6_9STRA)

HSP 1 Score: 194 bits (492), Expect = 1.160e-53
Identity = 110/247 (44.53%), Postives = 154/247 (62.35%), Query Frame = 1
Query:  709 GTAFGWLWFINSLLTAGAFSLVWYQPWSNGSGIPETKCVLNGVAIPQVLAPSTLVTKVLGVILGVASGLPVGKEGPMIHAGAAIGGVIANV--------PGIPCLAEFRNDRDRRDLAAMGTAAGVAAAFHTPIGGVLFTLEEGASFWTTFLTWRSFAAAVVTVVVYYLVFQGTHMFDEPLTASDMFLFGEFQD---SDSSFFMWELSVFALIAALGGLIGAGFVAWSKRMALFRARNLAGAKRRFI 1416
            G+AF    F  +L  A A   V+ +P S GSGIPE KC LNG+ +P+V+   TL+ KV+GV   VA+GLPVGKEGPM+H+G+ +   I+                ++FRNDR++RD  A G AAGVA+AF  PIGGVLF+LEEGAS+W+T LTWR+F  A+VT+   + V +G   F        +F FGEF       S++ +WEL +F +I  LGGLIGA F A ++ + ++R +N+   K+R +
Sbjct:   50 GSAFLAYLFYQTLFAAAAAMFVYLEPVSGGSGIPEIKCFLNGIDLPRVVRVKTLICKVVGVTFSVAAGLPVGKEGPMVHSGSVVAAGISQGRTKFWGVDTSFSKFSDFRNDREKRDFVASGAAAGVASAFGAPIGGVLFSLEEGASYWSTKLTWRAFFCAMVTMGTLFAV-RGFDSFWGQANMEKLFSFGEFNSLTGEGSNYSIWELLLFIIIGCLGGLIGAVFNATNEHLTIWRMKNVNICKKRRV 295          
BLAST of mRNA_P-littoralis_Contig65.135.1 vs. uniprot
Match: A0A7S2YMG2_9STRA (Chloride channel protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YMG2_9STRA)

HSP 1 Score: 201 bits (512), Expect = 1.480e-53
Identity = 114/245 (46.53%), Postives = 161/245 (65.71%), Query Frame = 1
Query:  733 FINSLLTAGAFSL-VWYQPWSNGSGIPETKCVLNGVAIPQVLAPSTLVTKVLGVILGVASGLPVGKEGPMIHAGAAIG-----GVIANVPGIPC------LAEFRNDRDRRDLAAMGTAAGVAAAFHTPIGGVLFTLEEGASFWTTFLTWRSFAAAVVTVVVYYLVFQGTHMFDEPLTASDMFLFGEFQD---SDSSFFMWELSVFALIAALGGLIGAGFVAWSKRMALFRARNLAGAK-RRFIE 1419
            F+  ++ A   SL VW++P S GSGIPE KC LNG+ +P+V+   TL+ KV+GV   VA+GLPVGKEGPM+H+G+ +      G +   PG          ++FRNDR++RD  A G AAGVAAAF  PIGGVLF+LEEGAS+W+T LTWR+F  A+ T+   + +     M+ +      +F FGEF +    DS+F +WEL++FA+I  LGGLIGA F A ++ + ++R +N+  +K RRF+E
Sbjct:   69 FLYQVIFASISSLFVWFEPVSAGSGIPEIKCYLNGIDLPRVVDVKTLICKVVGVTFSVAAGLPVGKEGPMVHSGSVVAASLSQGGLPTCPGSGADKSFSRFSDFRNDREKRDFVACGAAAGVAAAFGAPIGGVLFSLEEGASYWSTKLTWRAFFCAMTTLATLFWIRNVDTMWGQA-NVDKLFSFGEFSNLNGGDSNFSVWELTLFAVIGCLGGLIGAVFNATNEHLTIWRMKNVNHSKLRRFLE 312          
BLAST of mRNA_P-littoralis_Contig65.135.1 vs. uniprot
Match: A0A836CAG3_9STRA (Chloride channel protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAG3_9STRA)

HSP 1 Score: 200 bits (509), Expect = 1.980e-53
Identity = 129/309 (41.75%), Postives = 176/309 (56.96%), Query Frame = 1
Query:  445 EAADYELYDSKVWHTHKQDAADSNHRGTKGSRRQRKLVGRWL-TIALGVAVGLTGCFVTFFTEWIIHAKLHFIAHIIEEHEGESAIKRYGTAFGWLWFINSLLTAGAFSLVWYQPWSNGSGIPETKCVLNGVAIPQVLAPSTLVTKVLGVILGVASGLPVGKEGPMIHAGAAIGGVIANVPGIPCLA--------EFRNDRDRRDLAAMGTAAGVAAAFHTPIGGVLFTLEEGASFWTTFLTWRSFAAAVVTVVVYYLVFQGTHMFDEPLTASDMFLFGEFQD---SDSSFFMWELSVFALIAALGGLI 1335
            ++ DYE  +S VW  H+   A +  RG   +  +R  + RWL T+ +G   GLT   VT  T  +   K   +  ++E   G     R   AF      N    A A ++V  +P   GSGIP+ KC LNG+ +  V+ P  LV KV+G++  VA GLP GKEGPM+H+GA I   I+   G  C +        EFRNDR++RD  A G AAGVAAAF  PIGGVLF+LEEGASFW+T LTWR+F  A+VTV   Y+V    +++ +   A  MF FGEF +      ++ +WELS+F L+  +GGL+
Sbjct:    8 DSHDYEPDESDVWRAHRARRARAE-RGAWWTVGRRVSLLRWLVTLGIGACTGLTAMLVTLSTGALTRLKFGAVRGVMEREGGPGV--RALCAFC---AFNVAYVAIANAMVVIEPLCAGSGIPDIKCFLNGINLLGVVKPKALVCKVVGIMFAVAGGLPAGKEGPMVHSGAVIAATISQ--GDACCSDSSSSQFQEFRNDREKRDFVASGAAAGVAAAFGAPIGGVLFSLEEGASFWSTRLTWRAFFCAMVTVFTLYVVKSSENLWGQQDLAK-MFSFGEFGELTMGHGNYSVWELSLFVLLGCMGGLV 307          
BLAST of mRNA_P-littoralis_Contig65.135.1 vs. uniprot
Match: A0A1E7FXI3_9STRA (Chloride channel protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FXI3_9STRA)

HSP 1 Score: 202 bits (513), Expect = 2.000e-53
Identity = 131/338 (38.76%), Postives = 193/338 (57.10%), Query Frame = 1
Query:  445 EAADYELYDSKVWHTHKQDAADSNHRGTKGSRRQRKLVGRW-LTIALGVAVGLTGCFVTFFTEWIIHAKLHFIAHIIEEHEGESAIKRYGTAFGWLWFINSLLTAGAFSLVWYQPWSNGSGIPETKCVLNGVAIPQVLAPSTLVTKVLGVILGVASGLPVGKEGPMIHAGAAIGGVIANVP----GIPC----LAEFRNDRDRRDLAAMGTAAGVAAAFHTPIGGVLFTLEEGASFWTTFLTWRSFAAAVVTVVVYYLVFQGTHMFDEPLTASDMFLFGEFQDSD---SSFFMWELSVFALIAALGGLIGAGFVAWSKRMALFRARNLAGAK-RRFIE 1419
            ++ +YE  +S+VW  +      SN RG   +  +++ + RW LT A+GV   +      F +  +   K  +I  ++     ES+     TAF     I  LL A A   V+ +P S GSGIPE KC LNG+ +P+V+   TL+ KV+GV   V+ GLPVGKEGPM+H+GA +   ++       G+       ++FRNDR++RD  A G AAGVA+AF  PIGGVLF+LEEGAS+W+T LTWR+F  A+ T++    +      + +      +F FGEF       S++ +WEL +F LI  LGGLIGA F A ++ + ++R + +  +K RR IE
Sbjct:   44 QSHNYEPDESEVWRAYVAQVHFSN-RGQWWTTGKKRALKRWILTFAVGVVQAVVATSCNFASRSMTSRKYDYIYELLNPSFVESS-----TAFWNFCLIQVLLCAVASMFVYIEPVSGGSGIPEIKCYLNGIDLPRVVRIKTLICKVIGVTFSVSGGLPVGKEGPMVHSGAVVAAALSQGKTTCWGVDTSFSKFSDFRNDREKRDFVACGAAAGVASAFGAPIGGVLFSLEEGASYWSTKLTWRAFFCAMTTILTIQAITNIDTWWGQT-EVGRLFSFGEFNSISGGASNYSIWELPIFGLIGCLGGLIGAVFNAANEHLTIWRMKRVNHSKIRRVIE 374          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig65.135.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQG9_ECTSI1.060e-20179.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CM41_9STRA4.030e-6656.87Chloride channel protein n=1 Tax=Tribonema minus T... [more]
A0A8J2SFY8_9STRA2.890e-5740.46Chloride channel protein n=1 Tax=Pelagomonas calce... [more]
F0Y0N4_AURAN3.190e-5740.66Chloride channel protein n=1 Tax=Aureococcus anoph... [more]
A0A7S3NPJ8_9STRA5.360e-5739.71Chloride channel protein n=1 Tax=Aureoumbra lagune... [more]
D8LDY8_ECTSI5.590e-5441.02Phatr1_ua_kg.chr_17000030 n=1 Tax=Ectocarpus silic... [more]
A0A7S4J0F6_9STRA1.160e-5344.53Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A7S2YMG2_9STRA1.480e-5346.53Chloride channel protein n=1 Tax=Amphiprora paludo... [more]
A0A836CAG3_9STRA1.980e-5341.75Chloride channel protein n=1 Tax=Tribonema minus T... [more]
A0A1E7FXI3_9STRA2.000e-5338.76Chloride channel protein n=1 Tax=Fragilariopsis cy... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig65contigP-littoralis_Contig65:679187..683845 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LQG9
Preferred nameCLCN6
PFAMsCBS,Voltage_CLC
Model size1446
Max annot lvl2759|Eukaryota
KEGG koko:K05015,ko:K05016
KEGG TC2.A.49.3.3,2.A.49.3.4
Hectar predicted targeting categoryother localisation
GOsGO:0000323,GO:0003008,GO:0003674,GO:0005215,GO:0005216,GO:0005244,GO:0005247,GO:0005253,GO:0005254,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005764,GO:0005765,GO:0005768,GO:0005770,GO:0005773,GO:0005774,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006821,GO:0006884,GO:0007039,GO:0007154,GO:0007165,GO:0007600,GO:0008150,GO:0008152,GO:0008308,GO:0008361,GO:0008509,GO:0009056,GO:0009057,GO:0009268,GO:0009605,GO:0009612,GO:0009628,GO:0009987,GO:0010008,GO:0012505,GO:0015075,GO:0015103,GO:0015108,GO:0015267,GO:0015291,GO:0015297,GO:0015318,GO:0015698,GO:0016020,GO:0016021,GO:0016043,GO:0019538,GO:0019725,GO:0022803,GO:0022804,GO:0022832,GO:0022836,GO:0022838,GO:0022839,GO:0022857,GO:0023052,GO:0030163,GO:0031090,GO:0031224,GO:0031410,GO:0031974,GO:0031981,GO:0031982,GO:0032501,GO:0032535,GO:0034220,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0050794,GO:0050877,GO:0050896,GO:0050954,GO:0050975,GO:0051179,GO:0051234,GO:0051716,GO:0055085,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071840,GO:0090066,GO:0097708,GO:0098588,GO:0098656,GO:0098660,GO:0098661,GO:0098805,GO:0098852,GO:1901564,GO:1901565,GO:1901575,GO:1902476,GO:1905146
Exons8
Evalue1.74e-202
EggNOG OGsCOG0038@1|root,KOG0474@2759|Eukaryota
DescriptionChloride Channel
Cds size1446
COG categoryP
BRITEko00000,ko01009,ko04040
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig65.135.1prot_P-littoralis_Contig65.135.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig65 679187..683845 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791360.7577035-CDS-P-littoralis_Contig65:679186..6795701680791360.7577035-CDS-P-littoralis_Contig65:679186..679570Pylaiella littoralis U1_48CDSP-littoralis_Contig65 679187..679570 +
1680791360.7716599-CDS-P-littoralis_Contig65:679986..6800791680791360.7716599-CDS-P-littoralis_Contig65:679986..680079Pylaiella littoralis U1_48CDSP-littoralis_Contig65 679987..680079 +
1680791360.782933-CDS-P-littoralis_Contig65:680496..6807131680791360.782933-CDS-P-littoralis_Contig65:680496..680713Pylaiella littoralis U1_48CDSP-littoralis_Contig65 680497..680713 +
1680791360.800394-CDS-P-littoralis_Contig65:681013..6811681680791360.800394-CDS-P-littoralis_Contig65:681013..681168Pylaiella littoralis U1_48CDSP-littoralis_Contig65 681014..681168 +
1680791360.8134506-CDS-P-littoralis_Contig65:681540..6817161680791360.8134506-CDS-P-littoralis_Contig65:681540..681716Pylaiella littoralis U1_48CDSP-littoralis_Contig65 681541..681716 +
1680791360.8243523-CDS-P-littoralis_Contig65:682449..6825751680791360.8243523-CDS-P-littoralis_Contig65:682449..682575Pylaiella littoralis U1_48CDSP-littoralis_Contig65 682450..682575 +
1680791360.835987-CDS-P-littoralis_Contig65:683286..6834041680791360.835987-CDS-P-littoralis_Contig65:683286..683404Pylaiella littoralis U1_48CDSP-littoralis_Contig65 683287..683404 +
1680791360.845459-CDS-P-littoralis_Contig65:683668..6838451680791360.845459-CDS-P-littoralis_Contig65:683668..683845Pylaiella littoralis U1_48CDSP-littoralis_Contig65 683669..683845 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig65.135.1

>prot_P-littoralis_Contig65.135.1 ID=prot_P-littoralis_Contig65.135.1|Name=mRNA_P-littoralis_Contig65.135.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=482bp
MINEAAASSSQSLVDREVLVMREMANKSSPSPTPLGRQRRLSLYERANSI
IHISNDGKGSGDHNVPPVRSDRSSSSALVKGRDIDTTVSEERTSVQDKKS
ALGRDKYNTVLRDWLMHVVEKDDPNNAEDVQNIWATARRRRRLAYKTFEA
ADYELYDSKVWHTHKQDAADSNHRGTKGSRRQRKLVGRWLTIALGVAVGL
TGCFVTFFTEWIIHAKLHFIAHIIEEHEGESAIKRYGTAFGWLWFINSLL
TAGAFSLVWYQPWSNGSGIPETKCVLNGVAIPQVLAPSTLVTKVLGVILG
VASGLPVGKEGPMIHAGAAIGGVIANVPGIPCLAEFRNDRDRRDLAAMGT
AAGVAAAFHTPIGGVLFTLEEGASFWTTFLTWRSFAAAVVTVVVYYLVFQ
GTHMFDEPLTASDMFLFGEFQDSDSSFFMWELSVFALIAALGGLIGAGFV
AWSKRMALFRARNLAGAKRRFIEASRGMMRG*
back to top

mRNA from alignment at P-littoralis_Contig65:679187..683845+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig65.135.1 ID=mRNA_P-littoralis_Contig65.135.1|Name=mRNA_P-littoralis_Contig65.135.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4659bp|location=Sequence derived from alignment at P-littoralis_Contig65:679187..683845+ (Pylaiella littoralis U1_48)
ATGATTAACGAGGCGGCGGCAAGTAGTTCGCAGTCGTTGGTGGACCGCGA AGTACTTGTCATGCGCGAAATGGCGAATAAGTCCTCGCCCAGTCCGACAC CACTTGGACGGCAACGGCGACTGAGCCTCTACGAGCGGGCGAATAGCATC ATTCACATTTCAAACGACGGAAAGGGGAGCGGCGACCACAACGTACCGCC CGTTAGGAGCGACCGCAGTAGTAGTAGCGCGCTGGTGAAGGGCCGGGACA TTGACACAACCGTAAGTGAGGAGAGAACATCCGTGCAAGATAAAAAGTCG GCACTCGGCCGAGACAAGTACAACACGGTTCTTCGCGACTGGCTAATGCA CGTGGTGGAAAAAGATGACCCGAACAATGCCGAGGTGAGACACGGGGAGC ACTTTCGGCTACAGTACGTATGTAGACCTTGCGCTGATGATTACGGTGAA TACGCTGAGCACTTTCGTATTTTAAAGTACCACGTATACTTGTGCAGATG TGTGCATATGTATATTTCTGGGCATGCCTACCCGTGTACATAGCGCATCA ACACCGTCGTGGGCGACGACAGAGGACTTTGTTCGCAACAGAACCACGAC ATTGGCCTTGTTGTCAATCGCCAATAAATGAAAACCAGGTGCGTAAACTT ACTGGTAGTCTATACCATATGCACTTGGACTTCGAGATACATACCCGATC AAACAGATGACGAATGGCTTACTGCTGTACTATAATCAAGGTACTCGTTT AATATTTGTACGTTTTTGTCGCCATTTTGGCTGGATTTACCATGTACCAG GATGTACAGAATATTTGGGCCACGGCCCGTCGGCGGCGAAGGCTGGCTTA CAAGACCTTCGAGGCCGCAGACTACGAGCTGTATGACAGCAAGGTGCAGA GCTTCCGGCCTCTGTCGACTCATTTTGCCCCTCAACGACTATTCGCAAAA AAAGGAAACTTGGGTAGGAAATTCATGCGGGCGCCGGGAAGGTAGTGGCG ACAAAAAATGATGGTCAACAAACAGAGTGGCTCCGGTTCATGGCATAAGT GAGCTAGTTCCTCGCAAAGAGTCCTTGGGGAAACACGAGCAAGCACCCAC CGGGTACGGCACTAATCGATTTGCTCAGTTGTTACCTTTCGATGCTTCTC TATTCGCCGAAAACAAGGGCATACCTCAGCCCTCGCGTTCGGTGTTCGGC ATGGTAGGTAGCCATGTTGTACAGCTTCGTGAGGCGTCTACACAGCAGCA AGATCAACAGTAGTGTGTCACCTGTGCATATACCACCTCTCATTCGCGAA TATGAACAAGGTATGGCATACGCACAAACAAGATGCAGCGGACAGCAACC ACCGTGGGACGAAGGGATCGAGACGACAGCGAAAGCTGGTCGGGCGCTGG CTGACTATCGCGTTGGGCGTCGCCGTGGGACTGACCGGTTGCTTCGTGAC GTTCTTCACGGAGTGGATCATTCATGCGAAGCTCCACTTTATTGCCCACA TCATAGAGGAACACGAGGGCGAATCCGGTGGGTTTTGGTCTAGTCGAGAG CGTTCGCTCCACCGCTTTATCATATGTATGTATGTGTATGTGTATATGTA TGCGTGTGTGGAGACCAACAAAGTTAAAATATGCACTCGCATTCTTCGAG AAACATGTACTACTGCAGTTCAGTATAAAATATTACGTGGACTGAACCAT CACACATTAGGCTTCGAATCGTTGAACGAGTGTTGAAAGTACAAATGCAC TGTACTGGCCGAGTGATTTCCTCGTCTCGTCCTAGCAACTGATCATTGAC TCAAGCCACTTCTCGCATCGTTTGAAGCCATCAAGCGCTACGGCACAGCG TTCGGGTGGCTATGGTTCATCAACAGCCTCCTCACGGCTGGAGCTTTCAG CCTAGTATGGTACCAGCCGTGGTCCAACGGGTCGGGAATACCGGAGACCA AGTGCGTGTTGAACGGAGTCGCCATCCCCCAGGTAATGAGTGGAACTGAT TTTCTACTGCAACTCGCCCTGCGGCATTTGCTTTGGGGTGGGACAACCGC AAGGGGTGGACATCATGATTAAAATACAGCACCCCGCCGTATAACAGGTC ACACTTTAGGGCTCTCGTAGCCCGTGGGAAGATGCGCAAGTACCACCGTC AACGAGCTACACCGCCCCTAAGCTGGCACAGAGTTTCGCACACCAACAAC AATGAGCATGGAACTGGTCTGAAGCAACGACGTTGAAGTAGGCGATGGCA CCACATTCAATGATGAGAATCCCGAACACACCATTCATATTCACACTCCC GTCCTCCTTCGGGTAAGCACACCGAAATCCCCCCCCGTCGATTCATGAAA CCAGGTTCTCGCTCCAAGCACCCTGGTCACCAAAGTGCTCGGCGTGATTC TCGGCGTTGCCTCGGGACTACCTGTCGGGAAGGAGGGCCCCATGATTCAT GCGGGAGCCGCGATTGGCGGGGTCATCGCCAACGTTCCTGGGATCCCGTG TCTTGCGGAGTTCCGCAACGATCGAGACAGGTGACAGCATACGGGAGCAT GACACAGCCGTCGATACTGCGAGAAGTGCGCTCACGTTGTGCTTGGTTAT CTTACGGAAGACTTGAAGCAAGTGTGGTAAGTTCAGCATGTGCTTGTAAG ATGAGGCGTAAAAGCAATATGATGAGGTTGACGCTGGTCGTTTTACCGGT GAATATTTCAATATTGGGTCGGTAGTTAATAGAACGCTGGTTTTGACGTT ACCATATCATAGTTTCACAATGTACGGTTTGATCGGACAAACTCTTCAGC CCAAAATAGTTATTTCTGAGATATTAAGTGATACTGGTATATTGCAACAG AACGAGAACGTTCGTCGAGCGTTAGGGGCATTTGACGACCCAAGTCACCA ATGCAAAAGAGTTGTCATGAGGGTTGACCGGTCTACTTCAGACCAGACTC GTCATGTCGCTTGTCTCGTGGCCTTAGATATCCTTGCGCACGTTGTGTAT TTACTGCTGTGCAATCCGTTCCTAATGGGCGTTATCTTTGGCCGTTTGGA GAAAAGCAAATGCTCTGGGGTAACTTTATTGAATCTCGGGAACCCACAAT AGCATTGACTGTTATCTGTGAAAGAGGTAGTAACGGTGCCGGCATCGGAA CACAACACTAAACCCACGGGCCCTTACGATCGAGCTTGCTTGTAATCTGA CAATATCCAACAGGAGAACAATTGGAACTGAGCTGCCGTACCGTTCCTTT CCGTGCTTCGCAGACGCGACTTGGCAGCCATGGGCACGGCCGCTGGTGTG GCCGCCGCGTTTCACACCCCGATCGGAGGCGTTCTCTTCACCCTGGAGGA GGGGGCATCTTTCTGGACAACTTTTTTAACATGGAGAAGGTAGATCAGTA AAAGCCTCAGCGAGAGAACATTGCAATATGTTTGGCTGCTTCGTAGCACA CACGGGGAAAACGCGGTGTTCGAAAATCGAGAGAACACCAGTCGAAGGTT GGGCCCGGTGTGCTGCCAAACCAAGGCCGGAGGCGGGATAAGGGGGGGCA AAGGAAGTGAGAGGGGTTGTTATCGCAGCGAACGGGTCGGCCCCGGATGC CTGACCAAAGGGGTACAAACAGAGCAACATCGCACCGTTTGACTAGTTTA GTTGTTAATGTGTTTTTTGTGTGTTGTTTTCTTCGTCGGCGCCATTATCG TTTCTCCCGACCCTCCTCCACTGCCATTGCTGCTGCGGGGCTTGATCTCG GCCTGCGCATATTATTTTGTCGCCAACTTGGACCCCGGACGTAACACGGG TTTAGATAAATATGTATATCCTGAAAAACCTTACTATTAGGGCCATTGTA CGGCAGTGCCCACTTCAAGATGATCGTTACGCCTTGTTCTGTTTCGACCC CCCTTGAACAGCATTGCAGTCTGTCAAAATATCCGTACCCCCCCCTCTCC CGACGAGTCGAACCCGGCCGCAGGCAGTTTGTCTCTACTGCTTGAGGCAA TAATCTGGTCCCGTCGACATTGGACGTACCTCGCGCCCCCCACCCCCCGT ATCGTGGACATCCTCTGATAATGCCGTGCTTTTACCGCTTGGCGGGTCAG TTTTGCGGCCGCAGTCGTGACGGTGGTGGTGTACTACCTTGTGTTCCAGG GGACGCACATGTTCGATGAGCCCCTCACTGCTTCGGACATGTTTCTGTTC GGAGAGTTTCAAGACTCGGTGAGTCAGTCAGTCACTCCCACGGGTCTCCC TTGTCTCGCTTGGTCTCATCGCTTTAGAAATAGCTGGGGGGAGGGAATTC TTGAAACACAAAGACGAGTTTCATGGCAACGTTTTTCTCGTTGTGAAGGG TGAGCTTGAGTGTGCGTATATCATAGCATTGTGCTGCAAAGTGTTCAAGC ATCAGATTCAAGTACCCGCGGGGGAAATCCATGCGAACCACGACGATACC AACCAATCTTGCACGCTCCCTTTCACGTGCAGGACTCGAGCTTCTTCATG TGGGAGCTGTCGGTGTTTGCCCTGATTGCCGCCCTCGGCGGTCTCATCGG CGCCGGCTTCGTGGCCTGGAGCAAGCGCATGGCATTGTTCAGAGCCCGGA ACCTTGCGGGAGCAAAGCGTCGCTTCATTGAGGCAAGCCGTGGAATGATG CGTGGATAA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig65:679187..683845+

>mRNA_P-littoralis_Contig65.135.1 ID=mRNA_P-littoralis_Contig65.135.1|Name=mRNA_P-littoralis_Contig65.135.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1446bp|location=Sequence derived from alignment at P-littoralis_Contig65:679187..683845+ (Pylaiella littoralis U1_48)
ATGATTAACGAGGCGGCGGCAAGTAGTTCGCAGTCGTTGGTGGACCGCGA
AGTACTTGTCATGCGCGAAATGGCGAATAAGTCCTCGCCCAGTCCGACAC
CACTTGGACGGCAACGGCGACTGAGCCTCTACGAGCGGGCGAATAGCATC
ATTCACATTTCAAACGACGGAAAGGGGAGCGGCGACCACAACGTACCGCC
CGTTAGGAGCGACCGCAGTAGTAGTAGCGCGCTGGTGAAGGGCCGGGACA
TTGACACAACCGTAAGTGAGGAGAGAACATCCGTGCAAGATAAAAAGTCG
GCACTCGGCCGAGACAAGTACAACACGGTTCTTCGCGACTGGCTAATGCA
CGTGGTGGAAAAAGATGACCCGAACAATGCCGAGGATGTACAGAATATTT
GGGCCACGGCCCGTCGGCGGCGAAGGCTGGCTTACAAGACCTTCGAGGCC
GCAGACTACGAGCTGTATGACAGCAAGGTATGGCATACGCACAAACAAGA
TGCAGCGGACAGCAACCACCGTGGGACGAAGGGATCGAGACGACAGCGAA
AGCTGGTCGGGCGCTGGCTGACTATCGCGTTGGGCGTCGCCGTGGGACTG
ACCGGTTGCTTCGTGACGTTCTTCACGGAGTGGATCATTCATGCGAAGCT
CCACTTTATTGCCCACATCATAGAGGAACACGAGGGCGAATCCGCCATCA
AGCGCTACGGCACAGCGTTCGGGTGGCTATGGTTCATCAACAGCCTCCTC
ACGGCTGGAGCTTTCAGCCTAGTATGGTACCAGCCGTGGTCCAACGGGTC
GGGAATACCGGAGACCAAGTGCGTGTTGAACGGAGTCGCCATCCCCCAGG
TTCTCGCTCCAAGCACCCTGGTCACCAAAGTGCTCGGCGTGATTCTCGGC
GTTGCCTCGGGACTACCTGTCGGGAAGGAGGGCCCCATGATTCATGCGGG
AGCCGCGATTGGCGGGGTCATCGCCAACGTTCCTGGGATCCCGTGTCTTG
CGGAGTTCCGCAACGATCGAGACAGACGCGACTTGGCAGCCATGGGCACG
GCCGCTGGTGTGGCCGCCGCGTTTCACACCCCGATCGGAGGCGTTCTCTT
CACCCTGGAGGAGGGGGCATCTTTCTGGACAACTTTTTTAACATGGAGAA
GTTTTGCGGCCGCAGTCGTGACGGTGGTGGTGTACTACCTTGTGTTCCAG
GGGACGCACATGTTCGATGAGCCCCTCACTGCTTCGGACATGTTTCTGTT
CGGAGAGTTTCAAGACTCGGACTCGAGCTTCTTCATGTGGGAGCTGTCGG
TGTTTGCCCTGATTGCCGCCCTCGGCGGTCTCATCGGCGCCGGCTTCGTG
GCCTGGAGCAAGCGCATGGCATTGTTCAGAGCCCGGAACCTTGCGGGAGC
AAAGCGTCGCTTCATTGAGGCAAGCCGTGGAATGATGCGTGGATAA
back to top