mRNA_P-littoralis_Contig65.117.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig65.117.2
Unique NamemRNA_P-littoralis_Contig65.117.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig65.117.2 vs. uniprot
Match: A0A6H5K7M3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7M3_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 3.920e-28
Identity = 73/183 (39.89%), Postives = 100/183 (54.64%), Query Frame = 1 
Query:  226 VDIIG*HPRSNEQGERDDEGGFQVHVGALRAMGGTLQWWLGHYEVQ------EAVEREPKDLTLHRLAGIIGQVDEELYR----LFVQEKRKANSVTLEYPKQQIAMSPARMRILYFIAGWLLSRIWKHVRRNKVGEVEWMWFVDRHKYSSAQDAIRCEGELTDVVREVDRRNEPKGVRDCCF 744
            VD++     S  +G+R  +   +  V   +   GTL+ W+    +Q      ++VER       H L G+I QVDE   R    L   + R AN +T  YP+ Q+A+S  R R+LY+IAGW+LS+I  HVRR+ + E+EWMW VDRHKY S + A   E EL  V  EV RRN+P   R   F
Sbjct:   55 VDLLA----STCKGKRSTKEATKFTVARFQRWEGTLRGWMSDDVIQRVMFGLQSVERGK-----HELCGVINQVDEVNLRRLGGLAENKLRDANVITPTYPRTQVALSIPRRRLLYYIAGWVLSKIVTHVRRHNIQEIEWMWIVDRHKYPSKRAAEENEMELRGVTEEVQRRNDPTRPRGLVF 228
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BLAST of mRNA_P-littoralis_Contig65.117.2 vs. uniprot
Match: D7FVM7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVM7_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 1.070e-23
Identity = 54/96 (56.25%), Postives = 64/96 (66.67%), Query Frame = 3 
Query:  726 GTGLLFPTKVFLEFVLTLESGYYHILSQPFLLGAYRGDFPEEILRVILESPAVQSSWAACWTARDGDGEAIAVDPKVSREVFEFVTRKYQNCRMGD 1013
            G GLLF TKVF EF   LE GY+HILS+PFLLGAY GD P E LRV+ E+ AV+ +WA C     G       D KV+ EVF F+ +K+ NCRMGD
Sbjct:  267 GAGLLFATKVFFEFTYALEIGYFHILSKPFLLGAYLGDLPGETLRVVREATAVRDAWAECCPPSSGSVN-FEWDSKVAHEVFLFIVQKWHNCRMGD 361
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BLAST of mRNA_P-littoralis_Contig65.117.2 vs. uniprot
Match: A0A6H5KW14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW14_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 3.380e-21
Identity = 53/120 (44.17%), Postives = 73/120 (60.83%), Query Frame = 1 
Query:  388 DLTLHRLAGIIGQVDEELYRLFVQEKRKANSVTLEYPKQQIAMSPARMRILYFIAGWLLSRIWKHVRRNKVGEVEWMWFVDRHKYSSAQDAIRCEGELTDVVREVDRRNEPKGVRDCCFP 747
            D   H L  II  VDEELYR+FV+E+ K+N+V L YP +   +S AR ++LY+IAGWLLS+ W   RR+ + + EW + V  +   S+  AI  +  L D+V EVD RN+P       FP
Sbjct:   93 DQGRHYLCCIINVVDEELYRVFVKEREKSNTVALTYPTEIHKISTARGKVLYYIAGWLLSKAWSRKRRHNIPDQEWDFIVQHNHSPSSAGAIERDPILQDMVGEVDARNDPVNGAGLLFP 212
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BLAST of mRNA_P-littoralis_Contig65.117.2 vs. uniprot
Match: D7G5R0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5R0_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 1.240e-18
Identity = 45/108 (41.67%), Postives = 69/108 (63.89%), Query Frame = 1 
Query:  430 DEELYRLFVQEKRKANSVTLEYPKQQIAMSPARMRILYFIAGWLLSRIWKHVRRNKVGEVEWMWFVDRHKYSSAQDAIRCEGELTDVVREVDRRNEPKGVRDCCFPLK 753
            ++ELY +FV++K++AN + L YP  +  ++  R ++LY+I+GWLLS+ W HVRR K+ E EW+ FVD +K +S   A+  + EL  +V EV RRN+        F  K
Sbjct:  110 NQELYGVFVRKKKEANLIKLSYPDNKTRVTKPRAKVLYYISGWLLSKDWAHVRRQKIEEREWVSFVDLNKSASEGAAVEKDKELEHLVGEVKRRNDEINGAGLLFATK 217
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BLAST of mRNA_P-littoralis_Contig65.117.2 vs. uniprot
Match: D7FQM3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQM3_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 1.650e-10
Identity = 35/78 (44.87%), Postives = 45/78 (57.69%), Query Frame = 2 
Query:   89 LADPEAIVQRLVDAVDRLFTEHYRELIPLWDMTKGLAATRKVILDEWTSLVDILAATSKGKGTTKEASKFTLERFERW 322
            + D   + +++  A + LF EH+  L+ LW   K LA TR      W  LVD+ A  SKGKG+TKEAS FTL RF  W
Sbjct:   43 IRDAADVGEKVDAAAEGLFREHFPWLLDLWIQVKSLAPTRLFNATSWALLVDVQARVSKGKGSTKEASNFTLARFASW 120
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BLAST of mRNA_P-littoralis_Contig65.117.2 vs. uniprot
Match: A0A6H5K9K2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9K2_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 2.900e-6
Identity = 44/151 (29.14%), Postives = 62/151 (41.06%), Query Frame = 1 
Query:  331 LQWWLGHYEVQEAVEREPKDLTLHRLAGIIGQVDE------------ELYRLFVQEKRKANSVTLEYPKQQIAMSPARMRILYFIAGWLLSRIWKHVRRNKVGEVEWMWFVDRHKYSSAQDAIRCEGELTDVVREVDRRNEPKGVRDCCFP 747
            ++ W+ H  VQE       D   H L  II  VDE            ELYR+F++E+ K+N+V L Y  +   +S AR +                         EW + V  +   S+  AI  +  L D+V EVD RN+P       FP
Sbjct:  102 IRTWINHESVQEVARTRQGDQGTHYLRCIINVVDECYGEGVKPISGQELYRVFMEEREKSNTVALTYLTEIHKISTARGK-------------------------EWDFIVQHNHSPSSAGAIERDPILKDMVGEVDARNDPAAGAGLLFP 227
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BLAST of mRNA_P-littoralis_Contig65.117.2 vs. uniprot
Match: A0A6H5KLR4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLR4_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 1.750e-5
Identity = 30/107 (28.04%), Postives = 53/107 (49.53%), Query Frame = 1 
Query:  400 HRLAGIIGQVDEELYRLFVQEKRKANSVTLEYPKQQIAMSPARMRILYFIAGWLLSRIWKHVRRNKVGEVEWMWFVDRHKYSSAQDAIRCEGELTDVVREVDRRNEP 720
            H+L  + G +DE   +   Q+   A+ V + YP + + +   + R++Y IAGWLLS     V R +     ++ F + HK +SA++        + +   V+ RN P
Sbjct:  125 HKLTCVFGAIDEVADKTLTQQTDAAHLVKVAYPAEDVDLDVHQRRLVYNIAGWLLSSALSRVSRQRSLGSAFLPFFNSHKVASAEEFREAYPHFSGLEFVVEERNNP 231
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig65.117.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5K7M3_9PHAE3.920e-2839.89Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7FVM7_ECTSI1.070e-2356.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KW14_9PHAE3.380e-2144.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5R0_ECTSI1.240e-1841.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FQM3_ECTSI1.650e-1044.87Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K9K2_9PHAE2.900e-629.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLR4_9PHAE1.750e-528.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig65contigP-littoralis_Contig65:589569..591373 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1091
Hectar predicted targeting categoryother localisation
Exons3
Cds size456
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791360.2942169-UTR-P-littoralis_Contig65:589568..5898851680791360.2942169-UTR-P-littoralis_Contig65:589568..589885Pylaiella littoralis U1_48UTRP-littoralis_Contig65 589569..589885 -
1680791360.338017-UTR-P-littoralis_Contig65:590753..5910371680791360.338017-UTR-P-littoralis_Contig65:590753..591037Pylaiella littoralis U1_48UTRP-littoralis_Contig65 590754..591037 -
1680791360.3576493-UTR-P-littoralis_Contig65:591339..5913731680791360.3576493-UTR-P-littoralis_Contig65:591339..591373Pylaiella littoralis U1_48UTRP-littoralis_Contig65 591340..591373 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791360.309919-CDS-P-littoralis_Contig65:589885..5902241680791360.309919-CDS-P-littoralis_Contig65:589885..590224Pylaiella littoralis U1_48CDSP-littoralis_Contig65 589886..590224 -
1680791360.3249571-CDS-P-littoralis_Contig65:590636..5907531680791360.3249571-CDS-P-littoralis_Contig65:590636..590753Pylaiella littoralis U1_48CDSP-littoralis_Contig65 590637..590753 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig65.117.2prot_P-littoralis_Contig65.117.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig65 589886..590753 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig65.117.2

>prot_P-littoralis_Contig65.117.2 ID=prot_P-littoralis_Contig65.117.2|Name=mRNA_P-littoralis_Contig65.117.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=152bp
MGGTLQWWLGHYEVQEAVEREPKDLTLHRLAGIIGQVDEELYRLFVQEKR
KANSVTLEYPKQQIAMSPARMRILYFIAGWLLSRIWKHVRRNKVGEVEWM
WFVDRHKYSSAQDAIRCEGELTDVVREVDRRNEPKGVRDCCFPLKCSSNS
F*
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mRNA from alignment at P-littoralis_Contig65:589569..591373-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig65.117.2 ID=mRNA_P-littoralis_Contig65.117.2|Name=mRNA_P-littoralis_Contig65.117.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=1805bp|location=Sequence derived from alignment at P-littoralis_Contig65:589569..591373- (Pylaiella littoralis U1_48)
ACCTCGTGACGACGACAACGGACAGGGTCAGCTGGTCAGTTTCGATTCTG
CCACATCCAAAACTCATACTCCCGTAGCCCTCGTCTGTGGCGATTTATGG
GATCGGAGTTCAGGCGTGTTCGTTTGACAAAGGATTGAAAAAGATTTATC
TCGTTAAGTTGTCGGTTCGCCGCACACCGTCTTCTGTCACATTCGAGCTC
ATGGTGGTACTCGCGAATAGGGCTCTATAGTTTCTGTGAGTTCCGGACAA
CATCTCTCAAATGCCTGCCCTTGGCATGTCCCACCCCTAAACCAGCTTTG
CCTCGTGCTTTCTTTGGCTGTACCTTTCAACGGCAGGGGACCGCCAGCTC
CCGGACGCAGGCCTTGTTGGATGCCCACGCAGACAAGCTGCTGGCGGACC
CGGAAGCCATCGTTCAGCGTCTCGTGGATGCCGTCGATCGACTTTTCACC
GAGCACTACAGAGAGTTGATTCCCCTTTGGGATATGACGAAGGGTCTGGC
GGCCACGCGCAAGGTAATCCTCGACGAGTGGACATCATTGGTTGACATCC
TCGCAGCAACGAGCAAGGGGAAAGGGACGACGAAGGAGGCTTCCAAGTTC
ACGTTGGAGCGCTTCGAGCGATGGGGGGCACTTTGCAATGGTGGCTAGGT
CACTATGAGGTCCAGGAGGCGGTGGAGCGCGAGCCCAAGGACCTCACCCT
CCACCGGCTGGCGGGCATCATCGGCCAGGTGGACGAGGTATGGGCATATG
TTCTGCTGTTGTTGCATTGTGTTTCGTTGGTCGTGTAAAATTTGCGCCTG
CATGTGTGGGCGCAAATGTGTATGTTTACTTTGCGGATGGGGGGCTCACC
AGAGTGTCTCACCTCTCAATTTTCTCACGGGTCATACGGCATACTCCAAG
AGTTCTTGCATGCCTTGCGGCGCTTCGAAAGACGCGCGAAGTCTGGTAGG
TTCTTCATGTGTAGCTCGACTGAAAAGTAATTATTTGGCCTACGCTCGTT
TGTTTCAGCAGTGAGGGCTGAAATGATGCCCGCCGTTAAATTTGTGGCGT
TAACCTAGGCCTGATCTTTTACAAACCCTCGTGCCGTCGTGCGTCCTCGC
CCGTTGTTCGCTCCCGACTTGTTCCATCTGTCCGTTTTCTGTTTCGAAGG
AGCTGTACAGGCTGTTTGTCCAAGAGAAGAGGAAGGCGAACTCGGTCACC
CTCGAGTACCCGAAGCAACAGATAGCCATGTCGCCAGCGCGCATGCGGAT
CTTGTACTTCATCGCCGGGTGGTTGTTGAGCAGGATTTGGAAACACGTCC
GTAGGAACAAGGTGGGGGAGGTCGAATGGATGTGGTTCGTGGATCGCCAC
AAGTACTCGTCCGCGCAGGACGCCATACGGTGCGAGGGAGAACTGACCGA
TGTCGTGCGTGAGGTAGATCGGAGGAACGAACCAAAGGGGGTACGGGACT
GTTGTTTCCCACTAAAGTGTTCCTCGAATTCGTTTTGACGCTCGAGTCTG
GGTACTACCACATCCTGTCACAGCCATTTCTTTTGGGCGCGTATCGCGGC
GACTTTCCGGAGGAGATTTTGCGGGTGATACTAGAATCACCCGCAGTTCA
AAGTAGTTGGGCAGCTTGCTGGACGGCTCGTGACGGGGACGGTGAAGCCA
TCGCTGTTGATCCCAAAGTGTCACGTGAAGTGTTCGAATTCGTGACTCGT
AAATACCAGAATTGCCGTATGGGAGACTGGACCCGGCGTGTTAGTCGTAT
GACCTCCATTAGCAAAGCGCAGGCATCGGTTGCGCTGCGCACGGAACTTA
AGGTT
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Coding sequence (CDS) from alignment at P-littoralis_Contig65:589569..591373-

>mRNA_P-littoralis_Contig65.117.2 ID=mRNA_P-littoralis_Contig65.117.2|Name=mRNA_P-littoralis_Contig65.117.2|organism=Pylaiella littoralis U1_48|type=CDS|length=456bp|location=Sequence derived from alignment at P-littoralis_Contig65:589569..591373- (Pylaiella littoralis U1_48)
ATGGGGGGCACTTTGCAATGGTGGCTAGGTCACTATGAGGTCCAGGAGGC
GGTGGAGCGCGAGCCCAAGGACCTCACCCTCCACCGGCTGGCGGGCATCA
TCGGCCAGGTGGACGAGGAGCTGTACAGGCTGTTTGTCCAAGAGAAGAGG
AAGGCGAACTCGGTCACCCTCGAGTACCCGAAGCAACAGATAGCCATGTC
GCCAGCGCGCATGCGGATCTTGTACTTCATCGCCGGGTGGTTGTTGAGCA
GGATTTGGAAACACGTCCGTAGGAACAAGGTGGGGGAGGTCGAATGGATG
TGGTTCGTGGATCGCCACAAGTACTCGTCCGCGCAGGACGCCATACGGTG
CGAGGGAGAACTGACCGATGTCGTGCGTGAGGTAGATCGGAGGAACGAAC
CAAAGGGGGTACGGGACTGTTGTTTCCCACTAAAGTGTTCCTCGAATTCG
TTTTGA
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