mRNA_P-littoralis_Contig65.109.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig65.109.1 vs. uniprot
Match: D8LQI0_ECTSI (JmjC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQI0_ECTSI) HSP 1 Score: 514 bits (1324), Expect = 3.020e-174 Identity = 253/347 (72.91%), Postives = 283/347 (81.56%), Query Frame = 1
Query: 226 APLERIDVSGLSPSQVSEVVDFSRPCILTGALVIPECEAWCDALLEDLGEETCAFQIRDNNTGRSGVFEASLVDFVRGLQEESTHEESWYLLEEDLLGLSQARPELGALLAKSQDLLGMDEFELFPASVRPKNLCAIIGGVGARSFLHSDPMEWMGWNVLLEGRKSWTFLPPLPELDAPLGTYRLAPNAFGSHNISAGWQSDVDLYQRGATAXXXXXXXXXXXXXXXXCCASWPKEGEGHEVMQHAVSGVQEVGDLVLIPPRHWHQVYHLEPSVAVASQFMDQRVRHRVFRHILDWCGAASPSSEDFMFSSDFDALTPADQIREVLRAALVARYGREKGLEAFTSLE 1266
A L RIDV+GLS +QV+++VDFSRPCILTG L P+CE+WCD LL+DLGEETCAFQIRDN +GRS VFEASL+DFV+ LQ+ESTH ESWYLL+E LL QARPELGALL K QDLLG DEF+LFP SVRP+NLC I+GGVGARSFLHSDPMEWMGWNVLLEGRK WTFLPPL +LD+ LGTYRLAPNAFGSHN+SAGWQS+VDLYQ GA ASWP GEG EVMQHAVSGVQE G+LVLIPPRHWHQVYHLEPS+AVASQ+MD RVR RVFRH+LDWCGA S+D + SS FDAL DQI+EVL+ ALVAR+G EKGLEAF L+
Sbjct: 82 ASLPRIDVTGLSRAQVADLVDFSRPCILTGVLSSPDCESWCDGLLQDLGEETCAFQIRDNESGRSEVFEASLMDFVKRLQDESTHNESWYLLDEHLLDFPQARPELGALLEKPQDLLGTDEFQLFPPSVRPQNLCTIVGGVGARSFLHSDPMEWMGWNVLLEGRKLWTFLPPLADLDSSLGTYRLAPNAFGSHNVSAGWQSNVDLYQHGAAT------------------ASWPTAGEGQEVMQHAVSGVQEAGELVLIPPRHWHQVYHLEPSLAVASQYMDFRVRDRVFRHMLDWCGA----SDDVLLSSRFDALALRDQIKEVLKVALVARHGGEKGLEAFDGLD 406
BLAST of mRNA_P-littoralis_Contig65.109.1 vs. uniprot
Match: A0A7S2R9P6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R9P6_9STRA) HSP 1 Score: 207 bits (526), Expect = 1.350e-55 Identity = 136/378 (35.98%), Postives = 184/378 (48.68%), Query Frame = 1
Query: 238 RIDVSGLSPSQVSEVVDFSRPCILTGAL--------VIPECEAWCDALLEDLGEETCAFQIRDNNTGRSGVFEASLVDFVRGLQEESTHEESWYLLEEDLLGLSQARPELGALLAKSQDLLGMDEFELFPASVRPKNLCAIIGGVGARSFLHSDPMEWMGWNVLLEGRKSWTFLPPLPELDAPLGTYRLAPNAF--GSHNISAGWQSDVDLYQ-----RGATAXXXXXXXXXXXXXXXXCCASWPKEG--------------------EGHEVMQHAVSGVQEVGDLVLIPPRHWHQVYHLEPSVAVASQFMDQRVRHRVFRHILDWCGAA-SPSSEDFMFSSDFDALTPADQIREVLRAALVARYGREKGLEAFTSL 1263
+ DV P Q VD R ++ AL EAW A E +E +D+ TG + + SL FV L +S H+ S+YLL+E LL + P L + L + G D F LFPA ++PK C ++GG G+RS LH+DPMEW GWN LLEG K WTFLPP + LG+ R+ + G +NISAGWQSDVDLY +G + A EG +G + ++ +Q GDLV IPP WHQ YHLEPSVAVA Q++ + +V H+ WC A+ + F +D + A I+E+L AL A++G+ KG E F+SL
Sbjct: 76 QFDVVTGRPEQFRSEVDGRRVGVIKNALWGDMGAARSAEAMEAWTAAFFEAFAQERVTCHTKDSTTGETTALDLSLSHFV-DLAFKSNHQHSYYLLDESLLS---SAPSLASSLTLPEAWFGKDHFGLFPAELQPKQPCLVMGGAGSRSSLHADPMEWTGWNYLLEGSKLWTFLPPGKGTETALGSRRVLSGEWDGGKYNISAGWQSDVDLYMEKIAGKGRSGDWPSAAALGVMPSIARDYALGLVEGSCNTGHPFMPSNAMVLDALVDGRSLEDGRIAVLQREGDLVHIPPGWWHQTYHLEPSVAVAGQYLSSQNFQKVAAHVCKWCDASIGDAGSHFQQVADTEGYETA--IQELLLLALRAQHGQAKGDELFSSL 447
BLAST of mRNA_P-littoralis_Contig65.109.1 vs. uniprot
Match: W7TWL4_9STRA (F-box protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TWL4_9STRA) HSP 1 Score: 160 bits (406), Expect = 1.630e-39 Identity = 123/382 (32.20%), Postives = 173/382 (45.29%), Query Frame = 1
Query: 241 IDVSGLSPSQVSEVVDFSRPCILTGAL-VIPEC-----EAWCDALLEDLGEETCAFQIRDNNT-GRSGVFEASLVDFVRGLQEESTHEESWYLLEEDLLGLSQARPELGALLAKSQDLLG-MDEFELFPASVRPKNLCAIIGGVGARSFLHSDPMEWMGWNVLLEGRKSWTFLPPLPELDAPLGTYRLAPNAFGSHNISAGWQS-DVDLYQRGATAXXXXXXXXXXXXXXXXCCASWPKEGEGHEVMQHAVSGVQEVGDLVLIPPRHWHQVYHLEPSVAVASQFMDQRVRHRVFRHILDWC----------------------GAASPSSEDFMFSSDF---DALTPADQ-------IREVLRAALVARYGREKGLEAFTSL 1263
+D L Q + PC+LT A P + + D E+ + Q++ N+ + ++ +L V G+ ++STHEE+WYLL E LL SQ R ++ L G +D F+LFP +RPK C I+GG GARSFLH DP EW G N LLEGRK WTF PP A LG R+ P A+ +SAGW+S D DLY + + EG + + VQE G+LV+IPP HQVYHL+P +++A Q + V H+L W G + E + D D+ I + LR A++ R+G E+GL+A+ L
Sbjct: 36 LDARDLPSQQALDAYIKKGPCVLTHAFDKDPNTRKMADDTFSDTFFEEFQDVELEVQLKRNSKIAKPRLYSGTLAGIVDGMMQKSTHEEAWYLLNEKLLEDSQNR-KIKDPFRLPPSLFGKLDYFDLFPQRIRPKKHCLILGGTGARSFLHVDPFEWTGVNYLLEGRKIWTFFPPC---SADLGLKRVLPEAWEGE-VSAGWKSTDFDLYYKVPEIFEGAVTLDLPEVLA---------DVEGVQAL------VQEEGELVVIPPGWAHQVYHLKPGLSLAWQVCNHGNLKNVIMHMLTWAIESGGNLRHAQERPLHGGKAGLGQMEGTQEHVTRMVEIICQDTTEGVDERHQVMATIEKALRQAMILRHGPERGLQAYERL 397
BLAST of mRNA_P-littoralis_Contig65.109.1 vs. uniprot
Match: L1JM62_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JM62_GUITC) HSP 1 Score: 140 bits (353), Expect = 2.610e-32 Identity = 103/330 (31.21%), Postives = 158/330 (47.88%), Query Frame = 1
Query: 232 LERIDVSGLSPSQVSEVVDF--SRPCILTGALVI--PECEAWCDALLEDLGEETCAFQIRDNNTGRSGVFEASLVDFVRGLQEESTHEESWYLLEEDLLGLSQARPELGALLAKSQDLLGMDEFELFPASVRPKNLCAIIGGVGARSFLHSDPMEWMGWNVLLEGRKSWTFLPP---------------LPELDAP-LGTYRLAPNAFGSHN-------ISAGWQSDVDLYQRGATAXXXXXXXXXXXXXXXXCCASWPKEGEGHEVMQHAVSGVQEVGDLVLIPPRHWHQVYHLEPSVAVASQFMDQRVRHRVFRHILDWCGAASPSSE 1140
++ +D+ +SPS + D RP +L A+ + E E+WC+ L+ ++ FQ R G + + S DF+ + +S H++ ++L +E LL + + L ++ QD + FELFP S+RPK+ C +IGGVG+RS LH+DP +WMGWN LEG K WTFLPP L L+A +YRL PNA+ + + ++AGWQSD DLY+ W + Q++ + +G L + PS+A+ASQ+ + RV H+LDW + PS E
Sbjct: 86 MQTVDLDRISPSDFQRLYDQPDGRPVLLKNAIAMRQEERESWCEELVGEMAGSEIEFQRRCK--GSTSLEYESFEDFI-DIVFDSKHDDYYFLFDESLL---EDKESLRKRISLRQDFFPGNLFELFPKSIRPKDSCLVIGGVGSRSTLHADPYDWMGWNFCLEGSKLWTFLPPSFCGERVAARADLELLISLEADDKSSYRLEPNAWDAEDEQMTNFSLAAGWQSDNDLYREMFATGIV-----------------WME--------QNSQQNLINLGRLEI-------------PSIAIASQYANLAGFDRVLNHMLDW--SKLPSEE 369
BLAST of mRNA_P-littoralis_Contig65.109.1 vs. uniprot
Match: A0A8J2SEA1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SEA1_9STRA) HSP 1 Score: 136 bits (342), Expect = 1.420e-31 Identity = 97/282 (34.40%), Postives = 132/282 (46.81%), Query Frame = 1
Query: 271 VSEVVDFSRPCILTGALVIPECEAWCDALLEDLGEETCAFQIRDNNTGRSGVFEASLVDFVRGLQEESTHEESWYLLEEDLLGLSQARPELGALLAKSQDLLGMDEF-ELFPASVRPKNLCAIIGGVGARSFLHSDPMEWMGWNVLLEGRKSWTFLPPLPELDAPLGTYRLAPNAFGSHNISAGWQSDVDLY--QRGATAXXXXXXXXXXXXXXXXCCASWPKEGEGHEVMQHAVSGVQEVGDLVLIPPRHWHQVYHLEPSVAVASQFMDQRVRHRVFRHIL 1107
+ +D +P + GAL C+AW L+E G+ QI + F+A L +F STHE +L +E LL + A+ + G + + + FPA RP + C + G GARS LH DP +W G ++ LEG K W FL L DA L Y+L AFG SAG QSD+DLY Q G A +V + +Q GD+V++PP+ WHQ Y LEPS AVASQF +R VF H++
Sbjct: 32 IRAALDSGQPFVAAGALSPEACDAWTGNLMEGFGDAIVTQQIAGD------PFDAPLAEFFYDALA-STHETPHFLFDEALL---EGNLRAAAIAPQRAIFEGEESWLDAFPAERRPADACVVCAGAGARSPLHRDPYDWTGTSLCLEGSKVWRFL--LDVDDADLEAYKLPSEAFGDD--SAGTQSDIDLYCVQEG---DWPDAADFEDDRDLVKAKAGPENFTPSTQVPGRFCTALQFAGDVVIVPPKSWHQTYALEPSCAVASQFCGRRDAPTVFEHMI 296
BLAST of mRNA_P-littoralis_Contig65.109.1 vs. uniprot
Match: F0YQV8_AURAN (Expressed protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YQV8_AURAN) HSP 1 Score: 129 bits (324), Expect = 1.640e-29 Identity = 99/287 (34.49%), Postives = 130/287 (45.30%), Query Frame = 1
Query: 229 PLERIDVSGLSPSQVSEVVDFSRPCILTGALVIPECEAWCDALLEDLGEETCAFQIRDN--NTGRSGVFEASLVDFVRGLQEESTHEESWYLLEEDLL-GLSQARPELGALLAKSQDLLGMDE--FELFPASVRPKNLCAIIGGVGARSFLHSDPMEWMGWNVLLEGRKSWTFLPPLPELDAPLGTYRLAPNAFGSHNISAGWQSDVDLYQRGATAXXXXXXXXXXXXXXXXCCASWPKEGE-----GHEVMQHAVSGVQEVGDLVLIPPRHWHQVYHLEPSVAVAS 1059
P R+D + ++ +D P I AL +CEAW DAL+ LG+ Q R FE +L S+H +L +E LL G R GA + + + G + F+ FP S RP++ C + G GARS LH DP +W G ++ +EG K W F L DA LG Y LA AFG SAG QSD DLY R A+W V+ +Q GD+V++PPR WHQ Y LEPS+AVAS
Sbjct: 30 PAARVDAR--DHAAIAAALDAGEPFIAAEALSARDCEAWTDALMMRLGDAPVRRQRRGEALEMPLGAFFEDALT---------SSHALPSFLFDEFLLDGDDDLR---GAAVGPQRAIFGGERSWFDHFPESRRPRDGCVVGAGAGARSPLHRDPYDWTGTSLCVEGSKVWRFA--LDVADADLGAYELASEAFGGD--SAGTQSDADLYAR---RVGDGWPEPYAYDDDPALAATWSAAARFAPDVALPKTARFVTALQRAGDVVVVPPRAWHQTYALEPSLAVAS 295
BLAST of mRNA_P-littoralis_Contig65.109.1 vs. uniprot
Match: A0A835YWS3_9STRA (JmjC domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWS3_9STRA) HSP 1 Score: 122 bits (306), Expect = 2.040e-28 Identity = 76/188 (40.43%), Postives = 100/188 (53.19%), Query Frame = 1
Query: 706 LEGRKSWTFLPPLPELDAPLGTYRLAPNAFG-SHNISAGWQSDVDLYQRGATAXXXXXXXXXXXXXXXXCCASWPKEGEGHEVMQHAVSGVQEVGDLVLIPPRHWHQVYHLEPSVAVASQ-FMDQRVRHRVFRHILDWCGAASPSSEDFMFSSDFDALTPADQIREVLRAALVARYGREKGLEAFTSL 1263
+EG K WTFLPP PE L YRL PNA+G S+N+SAGWQS VDLY+ + + A++ G +V VQ G+ VLIPPR WHQV HL PS+AVASQ + R R R+F+HI DWCG ++ + + P Q+ VL+ L A++G + G F L
Sbjct: 1 MEGEKLWTFLPPCPE--HLLDGYRLPPNAWGGSYNVSAGWQSPVDLYRPFSESGAHGSDGIMLS-----AAAAY---GVPEDVWARRKQVVQREGETVLIPPRWWHQVIHLAPSIAVASQHYAGARGRRRIFQHIRDWCGCGGSAAPP-----EIRSWPPQKQVEWVLQEGLCAKHGTDVGERLFKEL 173
BLAST of mRNA_P-littoralis_Contig65.109.1 vs. uniprot
Match: A0A830HZM1_9CHLO (JmjC domain-containing protein n=2 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HZM1_9CHLO) HSP 1 Score: 124 bits (312), Expect = 1.340e-27 Identity = 87/275 (31.64%), Postives = 129/275 (46.91%), Query Frame = 1
Query: 340 AWCDALLEDLGEETCAFQIRDNNTGRSGVFEASLVDFVRGLQEESTHEESWYLLEEDLLGLSQARPELGALLAKSQDLLGMDEFELFPASVRPKNLCAIIGGVGARSFLHSDPMEWMGWNVLLEGRKSWTFLP----PLPELDAPLGTYRLAPNAFGSHN--ISAGWQSDVDLY-QRGATAXXXXXXXXXXXXXXXXCCASWPKEGEGHE--------VMQHAVSGVQEVGDLVLIPPRHWHQVYHLEPSVAVASQFMDQRVRHRVFRHILDWCG 1119
+W L+ +R+NN + F A ++ + + S H+ S ++EEDLL S A + A L K ++ ++ + P S+RP C + GG G+RS LH+D W+GWN L+EG K+WTF+P P E+ R+ P A+ N I AGWQ+ VD Y +R A S+ G E + H ++ Q G+LV+IPP +HQVYH +VA+A Q+ D V RH+ W G
Sbjct: 52 SWLSDLVASAENTHVEVLLRENN--HTSSFVAPFMEALGEIAHASDHDSSVLIVEEDLLANSPAHVQDAARLPK--EICAENKLDQLPPSLRP-GTCVLFGGAGSRSSLHADAFGWVGWNYLVEGEKTWTFIPHDAFPADEV-----CVRVPPAAWAGDNTSIGAGWQTAVDAYAERSADG------------------TSFTARGGTQEHARAVEEAIQNHGITVHQSEGELVIIPPECFHQVYHHTATVAIAGQYADNTNWPIVCRHVGRWVG 298
BLAST of mRNA_P-littoralis_Contig65.109.1 vs. uniprot
Match: A0A812XB14_9DINO (PSR protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A812XB14_9DINO) HSP 1 Score: 126 bits (316), Expect = 1.380e-26 Identity = 87/272 (31.99%), Postives = 124/272 (45.59%), Query Frame = 1
Query: 346 CDALLEDLGEETCAFQ--IRDNNTGRSGVFEASLVDFVRGLQEESTHEESWYLLEEDLLGLSQARPELGALLAKSQDLLGMDEFELFPASVRPKNLCAIIGGVGARSFLHSDPMEWMGWNVLLEGRKSWTFLPPLPELDAPLGTYRLAPNAFGSHN-------ISAGWQSDVDLY-QRGATAXXXXXXXXXXXXXXXXCCASWPKEGEGHEVMQHAVSGVQEVGDLVLIPPRHWHQVYHLEPSVAVASQFMDQRVRHRVFRHILDWCGAASP 1131
C LLE+ G + ++ + + + L DFV S HE+ L++E+++ + +LL + L D F FP +RP LC ++GG GARS LH DP+ W GWN LL+GRK W F P +P+ +R A FG I +GW+SDVDL+ R TA A +P ++H VQE G+ ++ P WHQ YHL P+ A Q ++ RV HI+ WC P
Sbjct: 39 CKTLLEEAGCQEVEYKRAAQGELSLATDSLSRVLCDFVPN----SCHEDPVLLMDENVVSTTSLA---NSLLEAAPPFLREDLFCEFPLMLRPAQLCLVVGGQGARSDLHIDPLSWTGWNCLLQGRKLWRFFPDIPQ---HAEAFRPASRPFGIRKGGAEVCTIGSGWRSDVDLFANRTNTAAEPPCDSFGWLSPDL---AKFPHVKGCSAPLEH----VQEPGETLIFPGHWWHQTYHLTPTFGFAGQVLNSGNLGRVLGHIIRWCELEVP 293
BLAST of mRNA_P-littoralis_Contig65.109.1 vs. uniprot
Match: A0A812KFH2_9DINO (PSR protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A812KFH2_9DINO) HSP 1 Score: 120 bits (302), Expect = 2.160e-26 Identity = 82/271 (30.26%), Postives = 119/271 (43.91%), Query Frame = 1
Query: 346 CDALLEDLGEETCAFQIRDNNTGR--SGVFEASLVDFVRGLQEESTHEESWYLLEEDLLGLSQARPELGALLAKSQDLLGMDEFELFPASVRPKNLCAIIGGVGARSFLHSDPMEWMGWNVLLEGRKSWTFLPPLPELDAPLGTYRLAPNAFGSHN-------ISAGWQSDVDLYQRGATAXXXXXXXXXXXXXXXXCCASWPKEGEGHEVMQHAVSGVQEVGDLVLIPPRHWHQVYHLEPSVAVASQFMDQRVRHRVFRHILDWCGAASP 1131
C LLE+ G + ++ + + + L DFV S HE+ L++E+++ + +LL + L D F FP +RP LC ++GG GARS LH DP+ W GWN LL+GRK W F P +P+ +R FG I +GW+SDVDL+ +P ++H VQE G+ ++ P WHQ YHL P+ A Q ++ RV HI+ WC P
Sbjct: 39 CKTLLEEAGCQEVEYKRATHGELNLATDLLSKVLCDFVPN----SYHEDPVLLMDENVVSTTSLA---NSLLEAAPPFLREDLFCEFPRMLRPAPLCLVVGGRGARSDLHIDPLSWTGWNCLLQGRKLWRFFPDIPQ---NAEAFRPMSRPFGIRKGGAEVCTIGSGWRSDVDLFAN--RTHPAAEPLCDSFGSLSPDLGQFPHVKGCSAPLEH----VQEPGETLIFPGHWWHQTYHLTPTFGFAGQVLNSGNLGRVLGHIIRWCELEVP 293 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig65.109.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 19
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig65.109.1 >prot_P-littoralis_Contig65.109.1 ID=prot_P-littoralis_Contig65.109.1|Name=mRNA_P-littoralis_Contig65.109.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=419bp MRWLGVAGTAVLIAVAVDSFNVLPQRKSSGKSQAAVRSTLLPASNAAGGCback to top mRNA from alignment at P-littoralis_Contig65:557895..561644+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig65.109.1 ID=mRNA_P-littoralis_Contig65.109.1|Name=mRNA_P-littoralis_Contig65.109.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3750bp|location=Sequence derived from alignment at P-littoralis_Contig65:557895..561644+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig65:557895..561644+ >mRNA_P-littoralis_Contig65.109.1 ID=mRNA_P-littoralis_Contig65.109.1|Name=mRNA_P-littoralis_Contig65.109.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1257bp|location=Sequence derived from alignment at P-littoralis_Contig65:557895..561644+ (Pylaiella littoralis U1_48)back to top |