mRNA_P-littoralis_Contig649.47.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig649.47.1
Unique NamemRNA_P-littoralis_Contig649.47.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig649.47.1 vs. uniprot
Match: A0A6H5KN27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN27_9PHAE)

HSP 1 Score: 152 bits (383), Expect = 3.900e-43
Identity = 83/159 (52.20%), Postives = 106/159 (66.67%), Query Frame = 1 
Query:    1 GSNLVCTVVWLALARLFDMFGGP-TALYIDVLLLSLDNCVGENKNNIVMAFLGCLVLMGVVGRVEVNFMQVGHTHIKIDQIFSRLALGVKGLNVFARSEQVAILKSSYKAVPMNASTLRNEGNFKDFLMGRYKM----IPSITRWRAFRLLRSEGNVGV 462
            GSNLVCT +WLAL RL  M+  P    YI  L L LDNCVGENKNNIV+AF+G LV  GV+G  EV F+ VGHTHIKIDQ+FSR ++G  G ++F RS+   + + SYK +P++  TL N GNFK   +   K+    I +IT +RAFR+ +  G V V
Sbjct:   10 GSNLVCTALWLALKRLSAMWTKPGQRFYIKRLHLQLDNCVGENKNNIVLAFIGGLVAAGVIGSAEVCFLIVGHTHIKIDQVFSRFSVGTLGRSIFTRSQLGELFRESYKELPVHVGTLTNLGNFKGLYLDDNKLNLRKIRNITTFRAFRVGKVAGEVSV 168
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BLAST of mRNA_P-littoralis_Contig649.47.1 vs. uniprot
Match: A0A6H5KA02_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA02_9PHAE)

HSP 1 Score: 150 bits (379), Expect = 7.700e-40
Identity = 83/159 (52.20%), Postives = 105/159 (66.04%), Query Frame = 1 
Query:    1 GSNLVCTVVWLALARLFDMFGGP-TALYIDVLLLSLDNCVGENKNNIVMAFLGCLVLMGVVGRVEVNFMQVGHTHIKIDQIFSRLALGVKGLNVFARSEQVAILKSSYKAVPMNASTLRNEGNFKDFLMGRYKM----IPSITRWRAFRLLRSEGNVGV 462
            GSNLVCT +WLAL RL  M   P    YI  L L LDNCVGENKNNIV+AF+G LV  GV+G  EV F+ VGHTHIKIDQ+FSR ++G  G ++F RS+   + + SYK +P++  TL N GNFK   +   K+    I +IT +RAFR+ +  G V V
Sbjct:  122 GSNLVCTALWLALKRLSAMGTKPGQRFYIKRLHLQLDNCVGENKNNIVLAFIGGLVAAGVIGSAEVCFLIVGHTHIKIDQVFSRFSVGTLGRSIFTRSQLGELFRESYKELPVHVGTLTNLGNFKGLYLDDNKLNLRKIRNITTFRAFRVGKVAGEVSV 280
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BLAST of mRNA_P-littoralis_Contig649.47.1 vs. uniprot
Match: A0A6H5KAY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAY2_9PHAE)

HSP 1 Score: 142 bits (357), Expect = 2.830e-37
Identity = 83/185 (44.86%), Postives = 106/185 (57.30%), Query Frame = 1 
Query:    1 GSNLVCTVVWLALARLFDMFGGP-TALYIDVLLLSLDNCVGENKNNIVMAFLGCLVLMGVVGRVEVNFMQVGHTHIKIDQIFSRLALGVKGLNVFARSEQVAILKSSYKAVPMNASTLRNEGNFKDFLMGRYKM------------------------------IPSITRWRAFRLLRSEGNVGV 462
            GSNLVCT +WLAL RL  M+  P    YI  L L LDNCVGENKNNIV+AF+G LV  GV+G  EV F+ VGHTHIKIDQ+FSR ++G  G ++F RS+   + + SYK +P++  TL N GNFK   +   K+                              I +IT +RAFR+ +  G V V
Sbjct:   10 GSNLVCTALWLALKRLSAMWTKPGQRFYIKRLHLQLDNCVGENKNNIVLAFIGGLVAAGVIGSAEVCFLIVGHTHIKIDQVFSRFSVGTLGRSIFTRSQLGELFRESYKELPVHVGTLTNLGNFKGLYLDDNKLXLPLKPTXXXXXXXXXXXXXXXXXXXNLRKIRNITTFRAFRVGKVAGEVSV 194
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BLAST of mRNA_P-littoralis_Contig649.47.1 vs. uniprot
Match: A0A6H5KK38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK38_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 3.030e-37
Identity = 78/159 (49.06%), Postives = 103/159 (64.78%), Query Frame = 1 
Query:    1 GSNLVCTVVWLALARLFDMFGGP-TALYIDVLLLSLDNCVGENKNNIVMAFLGCLVLMGVVGRVEVNFMQVGHTHIKIDQIFSRLALGVKGLNVFARSEQVAILKSSYKAVPMNASTLRNEGNFKDFLMGRYKM----IPSITRWRAFRLLRSEGNVGV 462
            GSNLVCT +WLAL RL +M+  P    +I  L L LDNCVGENKNNIVMAF+G LV  GV+G  EV F+ VGHTH K DQ+FSRL++G  G ++F R +   + + SY+ +P+   T  N GNFK   +   K+    I ++T +RAFR+ +  G V V
Sbjct:  237 GSNLVCTALWLALKRLSEMWNKPGERFHIKRLHLQLDNCVGENKNNIVMAFIGGLVAAGVIGSAEVCFLIVGHTHTKTDQVFSRLSVGTLGRSIFTRIQLGELFRESYRELPVRIGTPTNLGNFKGLYLADIKLNLRKIRNMTTFRAFRVGKIAGEVSV 395
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BLAST of mRNA_P-littoralis_Contig649.47.1 vs. uniprot
Match: A0A6H5JUU1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUU1_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 1.550e-36
Identity = 75/159 (47.17%), Postives = 99/159 (62.26%), Query Frame = 1 
Query:    1 GSNLVCTVVWLALARLFDMFGG----PTALYIDVLLLSLDNCVGENKNNIVMAFLGCLVLMGVVGRVEVNFMQVGHTHIKIDQIFSRLALGVKGLNVFARSEQVAILKSSYKAVPMNASTLRNEGNFKDFLMGRYKMIPSITRWRAFRLLRS-EGNVGV 462
            G NL CT   LA+ R+ D +      P+   I      +DNCV ENKNN  + + G LV   VV  VE++FM VGHTH KIDQ+FSR + G+KG N+F R+     L++SY  VP+  STLRNEGNFK  L+GR   +P+IT +RAFR+ +  +G V V
Sbjct:  186 GCNLACTAAHLAITRIIDKYHDSPPHPSGCIIQHAHWQVDNCVSENKNNFFLGYAGLLVAADVVRVVEIHFMMVGHTHTKIDQVFSRFSRGIKGKNIFTRTHLAEELRASYTEVPVFCSTLRNEGNFKGLLIGRVNRVPNITTYRAFRVEKGGDGRVKV 344
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BLAST of mRNA_P-littoralis_Contig649.47.1 vs. uniprot
Match: A0A6H5JTH9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTH9_9PHAE)

HSP 1 Score: 138 bits (348), Expect = 3.140e-35
Identity = 79/159 (49.69%), Postives = 101/159 (63.52%), Query Frame = 1 
Query:    1 GSNLVCTVVWLALARLFDMFGGP-TALYIDVLLLSLDNCVGENKNNIVMAFLGCLVLMGVVGRVEVNFMQVGHTHIKIDQIFSRLALGVKGLNVFARSEQVAILKSSYKAVPMNASTLRNEGNFKDFLMGRYKM----IPSITRWRAFRLLRSEGNVGV 462
            GSNLVCT +WLAL RL  M+  P    YI  L L L NCVGE KNNIV+AF+G LV  GVV   EV F+ VGHT IKID +FSR ++G  G ++F RS+   + + SYK +P++  TL N GNFK   +   K+    I +IT +RAFR+ +  G V V
Sbjct:  284 GSNLVCTALWLALKRLSAMWAKPGQRFYIKRLHLQLHNCVGEKKNNIVLAFIGGLVAAGVVVSAEVCFLIVGHTLIKIDHVFSRFSVGTLGRSIFTRSQLGELFRESYKELPVHVGTLTNLGNFKGLYLDDNKLNLRKIRNITTFRAFRVGKVAGEVSV 442
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BLAST of mRNA_P-littoralis_Contig649.47.1 vs. uniprot
Match: A0A6H5JAR9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAR9_9PHAE)

HSP 1 Score: 135 bits (340), Expect = 7.200e-35
Identity = 76/159 (47.80%), Postives = 100/159 (62.89%), Query Frame = 1 
Query:    1 GSNLVCTVVWLALARLFDMFGGP-TALYIDVLLLSLDNCVGENKNNIVMAFLGCLVLMGVVGRVEVNFMQVGHTHIKIDQIFSRLALGVKGLNVFARSEQVAILKSSYKAVPMNASTLRNEGNFKDFLMGRYKM----IPSITRWRAFRLLRSEGNVGV 462
            GSNL CT +WLAL RL  M+  P    +I    L LDNCVGENKNNIVMAF+G LV  GV+G  EV F+ +GHTHIKIDQ+FSRL +G  G ++F + +   + + SYK +P++   L N GN K   +   K+    I +I  +RAFR+ +  G V V
Sbjct:   10 GSNLECTTLWLALKRLSAMWTKPGERFHIKRRHLQLDNCVGENKNNIVMAFIGGLVAAGVIGFAEVCFLILGHTHIKIDQVFSRLFVGTLGRSIFTKIQLGELFRESYKELPVHVGILTNLGNLKGLYLADNKLNLRKIRNIATFRAFRVGKVAGEVSV 168
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BLAST of mRNA_P-littoralis_Contig649.47.1 vs. uniprot
Match: A0A6H5JCW3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCW3_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 4.480e-32
Identity = 63/120 (52.50%), Postives = 81/120 (67.50%), Query Frame = 1 
Query:  106 DNCVGENKNNIVMAFLGCLVLMGVVGRVEVNFMQVGHTHIKIDQIFSRLALGVKGLNVFARSEQVAILKSSYKAVPMNASTLRNEGNFKDFLMGRYKMIPSITRWRAFRLLRS-EGNVGV 462
            DNC  ENKNN  + F G LV   V+  VE+NFM VGHTH+KIDQIFSR + G+KG N+F R++   +L++SY  VP+  STL NEGNF   L GR   +P IT +RAFR+ +  +G V V
Sbjct:   22 DNCASENKNNFFLGFAGLLVAASVIRVVEINFMMVGHTHMKIDQIFSRFSRGIKGKNIFTRTQLAEVLQASYTEVPVFCSTLGNEGNFNGLLQGRVNRVPDITTYRAFRVEKGGDGRVKV 141
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BLAST of mRNA_P-littoralis_Contig649.47.1 vs. uniprot
Match: A0A6H5JXN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXN7_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 3.120e-28
Identity = 61/123 (49.59%), Postives = 83/123 (67.48%), Query Frame = 1 
Query:  106 DNCVGENKNNIVMAFLGCLVLMGVVGRVEVNFMQVGHTHIKIDQIFSRLALGVKGLNVFARSEQVAILKSSYKAVPMNASTLRNEGNFKDFLMGRYKM----IPSITRWRAFRLLRSEGNVGV 462
            DNCVGENKNNIV+AF+G LV  GV+G  EV F+ VGHTHIKIDQ+FSR ++G  G ++F RS+     + SYK +P++  TL N GNFK   +   K+    I ++T++ AFR+ +  G V V
Sbjct:  213 DNCVGENKNNIVLAFIGGLVAAGVIGSAEVCFLIVGHTHIKIDQVFSRFSVGTLGRSIFTRSQLGERFRESYKELPVHVGTLTNLGNFKGLYLDDNKLNLRRIRNVTKFWAFRVGKVAGEVSV 335
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BLAST of mRNA_P-littoralis_Contig649.47.1 vs. uniprot
Match: A0A6H5KUA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUA0_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 3.190e-16
Identity = 36/57 (63.16%), Postives = 44/57 (77.19%), Query Frame = 1 
Query:   79 YIDVLLLSLDNCVGENKNNIVMAFLGCLVLMGVVGRVEVNFMQVGHTHIKIDQIFSR 249
            YI    + +DNCV ENKN+IV+ +LG LV  G++G VEV FM VGHTHIKIDQ+FSR
Sbjct:   10 YIYRFTIQVDNCVSENKNHIVIGYLGSLVAQGIIGEVEVQFMPVGHTHIKIDQVFSR 66
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig649.47.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KN27_9PHAE3.900e-4352.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KA02_9PHAE7.700e-4052.20Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAY2_9PHAE2.830e-3744.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KK38_9PHAE3.030e-3749.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUU1_9PHAE1.550e-3647.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTH9_9PHAE3.140e-3549.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAR9_9PHAE7.200e-3547.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCW3_9PHAE4.480e-3252.50Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXN7_9PHAE3.120e-2849.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUA0_9PHAE3.190e-1663.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig649contigP-littoralis_Contig649:99861..100483 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog7739.XP_002587783.1
Preferred nameEXOC1
PFAMsSec3-PIP2_bind,Sec3_C
Model size469
Max annot lvl33208|Metazoa
KEGG koko:K19983
Hectar predicted targeting categorysignal peptide
GOsGO:0000145,GO:0002791,GO:0002793,GO:0003674,GO:0005488,GO:0005515,GO:0005543,GO:0005546,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005938,GO:0006810,GO:0006887,GO:0006892,GO:0006893,GO:0007154,GO:0007165,GO:0008104,GO:0008150,GO:0008289,GO:0009894,GO:0009898,GO:0009987,GO:0010506,GO:0016020,GO:0016192,GO:0016241,GO:0016324,GO:0017016,GO:0017048,GO:0017049,GO:0019222,GO:0019899,GO:0023052,GO:0031267,GO:0031323,GO:0031329,GO:0031503,GO:0032879,GO:0032880,GO:0032940,GO:0032991,GO:0033036,GO:0034613,GO:0034629,GO:0035091,GO:0035556,GO:0043167,GO:0043168,GO:0044424,GO:0044425,GO:0044444,GO:0044448,GO:0044459,GO:0044464,GO:0045177,GO:0046903,GO:0048015,GO:0048017,GO:0048193,GO:0048518,GO:0048522,GO:0050708,GO:0050714,GO:0050789,GO:0050794,GO:0050896,GO:0051020,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051601,GO:0051641,GO:0051716,GO:0065007,GO:0070201,GO:0070727,GO:0071944,GO:0090087,GO:0098552,GO:0098562,GO:0098590,GO:0098592,GO:0098876,GO:0099023,GO:0099568,GO:1901981,GO:1902936,GO:1903530,GO:1903532,GO:1904951
Exons2
Evalue1.12e-12
EggNOG OGsKOG2148@1|root,KOG2148@2759|Eukaryota,38EC2@33154|Opisthokonta,3B9M0@33208|Metazoa,3CWXP@33213|Bilateria,48923@7711|Chordata
DescriptionExocyst complex component
Cds size465
COG categoryU
BRITEko00000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791351.506864-CDS-P-littoralis_Contig649:99860..1001081680791351.506864-CDS-P-littoralis_Contig649:99860..100108Pylaiella littoralis U1_48CDSP-littoralis_Contig649 99861..100108 +
1680791351.5227869-CDS-P-littoralis_Contig649:100264..1004811680791351.5227869-CDS-P-littoralis_Contig649:100264..100481Pylaiella littoralis U1_48CDSP-littoralis_Contig649 100265..100481 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig649.47.1prot_P-littoralis_Contig649.47.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig649 99861..100481 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig649.47.1

>prot_P-littoralis_Contig649.47.1 ID=prot_P-littoralis_Contig649.47.1|Name=mRNA_P-littoralis_Contig649.47.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=155bp
GSNLVCTVVWLALARLFDMFGGPTALYIDVLLLSLDNCVGENKNNIVMAF
LGCLVLMGVVGRVEVNFMQVGHTHIKIDQIFSRLALGVKGLNVFARSEQV
AILKSSYKAVPMNASTLRNEGNFKDFLMGRYKMIPSITRWRAFRLLRSEG
NVGVC
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mRNA from alignment at P-littoralis_Contig649:99861..100483+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig649.47.1 ID=mRNA_P-littoralis_Contig649.47.1|Name=mRNA_P-littoralis_Contig649.47.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=623bp|location=Sequence derived from alignment at P-littoralis_Contig649:99861..100483+ (Pylaiella littoralis U1_48)
GGGAGTAACCTTGTCTGCACTGTGGTGTGGCTTGCGTTGGCTCGACTGTT
TGACATGTTCGGCGGCCCCACGGCACTGTACATCGACGTGTTGCTTCTAT
CCCTGGACAATTGCGTCGGCGAAAACAAAAACAACATTGTCATGGCCTTC
CTGGGATGCTTGGTGCTGATGGGGGTCGTTGGGAGAGTGGAAGTAAACTT
CATGCAAGTTGGACACACACACATAAAAATCGATCAGATTTTTTCCAGGT
ACGGATAGATCCCTGATCGAAATTGATAACCCTAAGTGCTGCTTCGTTGC
TGTCAAGTCACATCAAAACTGTAGGATACCACACGTTTGCTTTCGTCCTA
TTCCTTCGAGAGCCCTCCTAGAGTTGACTTCCTTCCGTCCGCTCGGTGTG
GCAGGTTGGCCCTGGGTGTGAAAGGTCTCAACGTTTTCGCGAGGAGTGAG
CAGGTGGCAATACTCAAATCTTCGTATAAAGCAGTTCCCATGAACGCTTC
CACGCTTCGGAACGAGGGCAATTTCAAGGATTTTCTCATGGGGCGGTACA
AAATGATTCCAAGCATCACGCGATGGCGGGCATTCCGGTTGCTGCGTTCG
GAAGGCAACGTTGGCGTCTGCGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig649:99861..100483+

>mRNA_P-littoralis_Contig649.47.1 ID=mRNA_P-littoralis_Contig649.47.1|Name=mRNA_P-littoralis_Contig649.47.1|organism=Pylaiella littoralis U1_48|type=CDS|length=465bp|location=Sequence derived from alignment at P-littoralis_Contig649:99861..100483+ (Pylaiella littoralis U1_48)
GGGAGTAACCTTGTCTGCACTGTGGTGTGGCTTGCGTTGGCTCGACTGTT
TGACATGTTCGGCGGCCCCACGGCACTGTACATCGACGTGTTGCTTCTAT
CCCTGGACAATTGCGTCGGCGAAAACAAAAACAACATTGTCATGGCCTTC
CTGGGATGCTTGGTGCTGATGGGGGTCGTTGGGAGAGTGGAAGTAAACTT
CATGCAAGTTGGACACACACACATAAAAATCGATCAGATTTTTTCCAGGT
TGGCCCTGGGTGTGAAAGGTCTCAACGTTTTCGCGAGGAGTGAGCAGGTG
GCAATACTCAAATCTTCGTATAAAGCAGTTCCCATGAACGCTTCCACGCT
TCGGAACGAGGGCAATTTCAAGGATTTTCTCATGGGGCGGTACAAAATGA
TTCCAAGCATCACGCGATGGCGGGCATTCCGGTTGCTGCGTTCGGAAGGC
AACGTTGGCGTCTGC
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