mRNA_P-littoralis_Contig649.43.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig649.43.1
Unique NamemRNA_P-littoralis_Contig649.43.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig649.43.1 vs. uniprot
Match: A0A6H5JJG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJG9_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 4.220e-11
Identity = 37/110 (33.64%), Postives = 55/110 (50.00%), Query Frame = 1 
Query:   10 ELVGQYMPDKAVIRLYDKSKSGVYDLYLTEQKGLHGNISGA-----CSASHFNRIWREGCQFLKLTQGRDFMLCNVCTLANQTLHGTPGGEATTDSSIRESTEAALATHL 324
            ++ GQ MP+     LY KSK  +Y+ Y    + L+G    +     CS ++FN++W      LKL    DFMLC +CTL  + +HG  G     D + RE  ++    HL
Sbjct:  263 DMYGQKMPNSDQSYLYLKSKLELYEEYSKNTRELYGQDPASLAERLCSKNYFNQVWSAHFGNLKLKPNGDFMLCEICTLLKEKIHGQAGSRGVLDEAERERHQSVYKEHL 372
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig649.43.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JJG9_9PHAE4.220e-1133.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig649contigP-littoralis_Contig649:94147..99260 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size464
Hectar predicted targeting categoryother localisation
Exons2
Cds size339
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791351.4377573-UTR-P-littoralis_Contig649:94146..941731680791351.4377573-UTR-P-littoralis_Contig649:94146..94173Pylaiella littoralis U1_48UTRP-littoralis_Contig649 94147..94173 +
1680791351.4735286-UTR-P-littoralis_Contig649:99162..992601680791351.4735286-UTR-P-littoralis_Contig649:99162..99260Pylaiella littoralis U1_48UTRP-littoralis_Contig649 99163..99260 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791351.4476426-CDS-P-littoralis_Contig649:94173..942181680791351.4476426-CDS-P-littoralis_Contig649:94173..94218Pylaiella littoralis U1_48CDSP-littoralis_Contig649 94174..94218 +
1680791351.459527-CDS-P-littoralis_Contig649:98868..991621680791351.459527-CDS-P-littoralis_Contig649:98868..99162Pylaiella littoralis U1_48CDSP-littoralis_Contig649 98869..99162 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig649.43.1prot_P-littoralis_Contig649.43.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig649 94174..99162 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig649.43.1

>prot_P-littoralis_Contig649.43.1 ID=prot_P-littoralis_Contig649.43.1|Name=mRNA_P-littoralis_Contig649.43.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=113bp
MPDKAVIRLYDKSKSGVYDLYLTEQKGLHGNISGACSASHFNRIWREGCQ
FLKLTQGRDFMLCNVCTLANQTLHGTPGGEATTDSSIRESTEAALATHLK
VNSHPFNPGKKR*
back to top

mRNA from alignment at P-littoralis_Contig649:94147..99260+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig649.43.1 ID=mRNA_P-littoralis_Contig649.43.1|Name=mRNA_P-littoralis_Contig649.43.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5114bp|location=Sequence derived from alignment at P-littoralis_Contig649:94147..99260+ (Pylaiella littoralis U1_48)
GCACGAGGCGAACTAGTTGGTCAGTACATGCCAGACAAGGCGGTCATCCG
ACTGTACGACAAGAGCAAGTCGGTAAGAAGCTCGTTTCGGTTTCGTCAAA
GTTTATACTTTATGAAATTGATTTGGCATTTTCATAAGAGCGGTGAGCAA
AGCGCATCTCCCGTACGTAAGTAAATCTTTTCCTGGCATCACGACTACCT
ACCCAACCTTTACCTACGCCCCCCCAACCCGAGGGGGGTGGGGGGGAGCA
ACCTGACGTAACTCAACGAAGTCAACGCAACTTAACCTAACCCCACCCAA
ACAATGTCAGCCAAATCCCCCGCGTACGCTTGCCTGGCCACAGAGGGCTT
GAGACACATCCGAGGATTAGAGGGGGCGGGTTCCACACGGGCGCTTTCAT
AAAACCGATATTCTCGGTATTCTGCTGTTCGTATCCCTAGCGACATTTTT
GCATTTTAGTTGAGACATATGTCCCTGACATGGGCGAGACCCTCCCCCTA
CCCGCTAGAGTAGATATCTGGGAATCGACGATGACCGGCATTCACGGAAC
CCCCCTTTTTTTCGGGAGAATCGATTGTTTTCGGGAAAAGCAGGAAGTGT
TGCTTGCTGCCGAAAGAGCACGCCCAAAAACACGCACCAACCCATCCTCG
CACTACCCCTCGACCCCAACCGGATCCATTCTGTCACTCCCACCCGACGA
ACGCTCACAACCCGGCTGTGTTCTATAGTCTGATGTTAGAGTAGCAGCAG
TAAACGCCAGCACTAGTTCCAGGAAGAGGACGGGAGAGGGCTGTGGGTGC
TTTGCCTATCGTTAGGGGCTCAATGCTGGTGGTTGTTTCTGCATACAGCA
GTAGTACAGCAGTGTAGTATGAAGTACGATTAGTACTGCTGACTCCACGA
CGAGTAGGTAGGTGACCACACACAGCAGTACCAGGACGAGGAGGCCACTC
CGCGCACAGCACATAGACCTTTGAGACTCCAGAGTGAGAAATATAGAGAG
GTTTTCGAACGATATCCCGACGTAACTCAAACGCCAACCCAACGAAACTA
CCCCAACCCAAGCCACCCTTACAATcCCCCCTAACCCAACTTAACCCCAC
CGCCCCAACTCATCCGAACCCAACCCAAATCAACCCAAACCAACCCAACC
ATACGGTACCCTCCCCTACCCCCCCCCAGAGAGTGGGGCGCAACCCTACA
CAACTCAACTCAACCCGACCCAACTCTACCGAACTCAACCCTCCCCAACC
CAACGCTACCCGACCCAACCCAACCCAACCATACGGTACCCCCCAACCCC
CCCCCCTGGGGGGGAGGGGGGCGCGCAACTCAACATAACACAACACAACA
CAACACAACCCCGATCATGAGTGGGGGCGTAACCCTACAGACCCAACCCA
ACCGTACTGTACCCCTCCCCAACCCCCCCAGAGGAGACAAGTTGCAAACT
CGCGACCTCGCATGATCGCCCAAATTTGAGACTTTGTTTTTTTATCGGTC
TCTTTCGACGCCTGCTTCATTTTGGCCTGATAAAGCCGGATTGGGCTTCC
GTGTTTCATACTCGCAAAGCCCCAGTGGATTTGTTTCCATGTCAGAGTAC
CCGCTCAAGAAACGGAATAATCAATCAAGAGACAAAGCAAAAAAGGAATA
CTGCTGTCGTACGAGTAGAGTACCACCCACTAAACAACCAACAATCAATA
GTGATGATGTGGTATCATCTGTAAAACATTGCGGGCTAGCCCACTTTCTT
GTGCTCGATGGAACTCACGTCCCGCCGCCTTCAACCTACTCCAGATAACA
ATACTGCTCGTGATTGTGCACCACAACAGTTGGTGTAGACAGACGGTTTT
GCAAGCCAGCTTTTAATATCAGCAGGCAGCCCGAAATTAGACAAAACGAA
ATCACACCCTTTCATCTATCTCTACAGACACCTTTGATGCTCGTTTTAGC
AACACTCCGCTTCTGTACAGAGTAGGTACAAATGGGGCTCCCAAAAAGCA
GGGGAAAGGCCATGTACAGCAGCATATTGAAGCAGGTTCAAGGCGACGGG
TAGGTGTGTATAGGTGTACAGAAGCAGCAGCACGTGATCAAAGCTCTCGA
TTATCGCATGTTGGAATGAGAACGCACGGCGAATCATTTTATTTTTCCTG
GAATAGTTGGATGTATTTTTTTGTTTTTGCTGCTTCGCGCTCTCATTGCT
CGGCTGCCTTGCGGGCTCCGATCTCGCGCGGTTTGCTAAGCGGAAGCCTT
AGGAAGCTTTTTGATATCGACGTTGTTAGCGAGGCAGGGCAGTCAGCGGT
GTCACGAGTCGACCATGTATAGAGCTTTCTGGCATCGTCTTCGTGTGTGT
GTCTTAGGGTTGGTACTCGTAAAAGTAGTGCTGGTGTGCTGTGCTGTGCT
ACAGCAGCAGCAGTGCGGCAGCACGGCAGAAGTATTTACTCGCTGGGTGT
TCTCATCATGGTGTTGTGTACTCGTATCACAAGATTGATCGTGGGGGGTG
ATTTGGTGAGGAACGAAGcCCCCCCGTGATGGCCGTCTGTGAATCCCCCG
CTTGATGAAGCTTTGGTGAAGAAAAGCTACTTTGTTTGATCGAGCGGGAA
TTTTGCAACTTGGGACGTCCTCCCAAATCCTGCTTTATTTAGATGCCGAA
AGAAGCAAGGAAAAATTGCCCTTTGTTTCACACTCGTAAAGCTATATCGC
CCATTTCTCGGAATGTTTGGGATGAAGAGCCTAATACTGACTACGGTTAT
GCAAGGTCTCGATTTTGCAACGTGTCTAGGGGGGCACGCGACCCAACCCA
ACCCCCCAACCGTACGGTACCCCATGCAACCCCCCCCAAACCCCCCCAGA
GGGGAGGGCGCAACCCTACACAACTCAACCCAACCCAACCCTCCCCAACC
CAACCCTACCCAATCGAACCAAAACCAACCATACGGTATCCCCCCCAACC
CCCCCACCCAACCCAGCCCAACACAACCCACACAACCCAATACAACACAA
CACAGCCCAACCGTACGGTACCCCCCCCAACCCCCCGAGGGGGGGGCGCA
ACCTTTCCCTACCCAACCCAATCGTGGGTGGGGGGCAGCGCAACCCTACA
CAACCCAACTCAAATGAAAACACCACCCAACCAAACACAACCTAAAACCC
CTGCCCAACCCCCTCCCGGCAACCCAACCCAACCAAACACGACCCAAAAC
CCTACACAACCCAACTCAAATACAAACACCAACCCAACCATACGGTACCC
CTCCCAACCCCCCCCAAAGGGGGGGGCGCAACCCTACCCTACCCAACCAA
ACTAACCAACCCCGCCCAACACAACCCAACTCAACCCAACATCTTCCAAC
CCCCCCCCCCCACAGGGGCCCCGTGGTGGAATGTTTTTTCACTAATAGAT
TTGTGTTTTATTTTAACTCAGAAAAATTGTTTGCAGTGCACTCGCGCGAT
TCAGTGGTTTATTGAGGCCTAGCTCCGATTCGTTTTGTTGAAATCAGGGC
GTCTACGACATGGAACCCTAACCCCTACCAGAAGCTTTGGTGAAGAAAAG
CTACTTTGCTTGATCAAGCGGGAACTCTGCAACTTAAAACATCCTTCCAA
ACCCTGCTAAATTTAGATGCCGAAGGAAGGAAAAATTGCCCTTTGTTTCA
CACTTGTAAAGCTATATCGCCCATTTCTCGGAATGTTTGGCATTAAGAGC
CGAATATTGGCTACGATCATGCAAGGTCTCGATTTTTTATGATGTGTCTA
GGGGGGCACGCGACCCAACCCAACTCCCCAACCGTACGGTATCCCCCCCA
ACCCCCTCAACCCCCCCCAGAGGTGAGGGCGCAACCCTACACAACTCAAC
CCAACCCAACCCTCCCCAACCCAGCCCTACCCAATCGAACCAAACCCAAC
CAAACAATACCCCTCCCAATCCCCCCACCCAACCCAGCCCAACACAACCC
CACACAACCCAACACAACCCAACACAGCCCAACCGTACGGTACCCCCCCC
ATCCCCCCGAGGGGGGGGCGCAACCTTACCCTACCCAACCCAATCGTGGG
GGGGGGGCGCAACCCTACCCTACCCAACCCAATCATGGCGAGGGGCGTAA
TCCTACCAACCCAACCCAACCGTACGGTACCCCCCCCCCCCCCCCCAGAG
GGGGGGGCGCAACCTGACACAACCCAACCCAACCCAACCGTACGGTACCC
CCCCAACCCTCCCCAGAGGGGGGGGCGCAACCCGACACAACCCAACCCAA
CCCAACCGTACGGTATCCCCCCCAGCCTCCCCCATAGGGGGGGGCGCAAC
CATACCGTACTCCCCCCCAACCCCCTCCCGAGGGGGGGGCGCAACCCAAG
ACAACCAAACACAACCCGAAACCCTACACAACCCAACTCAATTGAAAACA
CCACACAACCAAACACAACCCAAAACCCTACACAACCCAACTCAATTATA
AACACCACCCCAACCCAACCATACGGTTCCCCTCCCAACCCCCCGGGCGC
AACCCTACCCTACTCAACCAAACCGACCAACCCAACGAAACACAACCCAA
CTCAACCCAACACTTGACCAACCCTCCCCCCCCGACAGGGGCCCCGTGGT
GGAATATTTTTTTACAAATAGTTTTGTGTTTTTTTTTTACTCAGAAAAAT
TGTTTGCAGTGCACTCGCGCGATTCAGTGGTTTTTAATGAGGCCTAGTTC
CGATTCGTTTTGTTGAAATCAGGGCGTCTACGACCTGTACCTGACCGAAC
AGAAGGGGCTACATGGCAACATTTCCGGAGCCTGCAGCGCCTCGCACTTC
AACAGGATTTGGAGGGAAGGATGCCAGTTTCTGAAGCTCACACAAGGGAG
AGACTTTATGCTCTGCAATGTTTGTACGCTAGCGAACCAAACCCTTCATG
GAACACCCgGGGGAGAGGCTACGACTGACTCCTCGATCAGAGAGTCGACA
GAAGCGGCTCTCGCTACACATCTAAAGGTAAATAGTCACCCGTTCAACCC
AGGCAAAAAACGATAATTAAAGACAACAAATACTAAATTGTCACGTCGAG
TTCATGCGTCATCGTCCTCTGATAATAACCTCCGGCGCAACCTGCGTGAA
GAAACGTGTGCTTT
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig649:94147..99260+

>mRNA_P-littoralis_Contig649.43.1 ID=mRNA_P-littoralis_Contig649.43.1|Name=mRNA_P-littoralis_Contig649.43.1|organism=Pylaiella littoralis U1_48|type=CDS|length=339bp|location=Sequence derived from alignment at P-littoralis_Contig649:94147..99260+ (Pylaiella littoralis U1_48)
ATGCCAGACAAGGCGGTCATCCGACTGTACGACAAGAGCAAGTCGGGCGT
CTACGACCTGTACCTGACCGAACAGAAGGGGCTACATGGCAACATTTCCG
GAGCCTGCAGCGCCTCGCACTTCAACAGGATTTGGAGGGAAGGATGCCAG
TTTCTGAAGCTCACACAAGGGAGAGACTTTATGCTCTGCAATGTTTGTAC
GCTAGCGAACCAAACCCTTCATGGAACACCCgGGGGAGAGGCTACGACTG
ACTCCTCGATCAGAGAGTCGACAGAAGCGGCTCTCGCTACACATCTAAAG
GTAAATAGTCACCCGTTCAACCCAGGCAAAAAACGATAA
back to top