mRNA_P-littoralis_Contig648.20.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig648.20.1
Unique NamemRNA_P-littoralis_Contig648.20.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig648.20.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig648contigP-littoralis_Contig648:124431..126656 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size292
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size159
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791348.6929104-CDS-P-littoralis_Contig648:124430..1245351680791348.6929104-CDS-P-littoralis_Contig648:124430..124535Pylaiella littoralis U1_48CDSP-littoralis_Contig648 124431..124535 -
1680791348.7135134-CDS-P-littoralis_Contig648:126469..1265231680791348.7135134-CDS-P-littoralis_Contig648:126469..126523Pylaiella littoralis U1_48CDSP-littoralis_Contig648 126470..126523 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791348.7265744-UTR-P-littoralis_Contig648:126523..1266561680791348.7265744-UTR-P-littoralis_Contig648:126523..126656Pylaiella littoralis U1_48UTRP-littoralis_Contig648 126524..126656 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig648.20.1prot_P-littoralis_Contig648.20.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig648 124431..126523 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig648.20.1

>prot_P-littoralis_Contig648.20.1 ID=prot_P-littoralis_Contig648.20.1|Name=mRNA_P-littoralis_Contig648.20.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=53bp
MRSRKQERDTSRKIAQAEDEPARTWEKKQPEDNDTFRALRDAGLPRCPSL
RR*
back to top

mRNA from alignment at P-littoralis_Contig648:124431..126656-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig648.20.1 ID=mRNA_P-littoralis_Contig648.20.1|Name=mRNA_P-littoralis_Contig648.20.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2226bp|location=Sequence derived from alignment at P-littoralis_Contig648:124431..126656- (Pylaiella littoralis U1_48)
CTGAAAACCGGGTTTGAAATCTGTAAAAGAAGGATGGTTCGCATCCCAAG
CGTCAAACAGCACCCGCAGTGGACGCACAGGAGCACCAACGCGATGCACC
CTAACTAAAAAGTTGGCCATCTTCCGGTGCAAAATGAGAAGTAGGAAACA
AGAAAGAGACACTAGCCGGAAAATAGCGCAGGCGGAGGTGAGGCATGTGG
ATTTGAACTGCTATGATAGTGTGAAAGAAAAACGTTCAAGCTATGGTGGT
ACTCACAAAGGCCCCACCAGGGGCCACTCTAGGGCACTCACCCCCTTATC
GTTGTACGTGGCGAGGAGGAGCTCTTTGCCCCTTCGCGCAATGATGGATC
TGCAAACGTCAACGATGGGACATTTTATTTTCTCGTCATCGGCTGCAGAT
TCAGGATTCGTTTGGTGCGTTCAAAGTTGATTCCCGACAACAGCACCGAG
AGGATAACAGCAGTAACTCGTCCTATGATGCGGGTCGAGACGACAAGCAG
GGAGCCATTGTGCACAGAGAGCAGCGGCCGCTTGTGCCGCGAGCACGCGC
AACTCCTCCACTACCTCGACCACCCGTCCAACCGTTTCTGCGGTATCGTA
CACGCATAGCCTTTTACCTCCATAGCCACGCCTTGACAAACTCTCGCGGG
TCAGTCTTCGCGTCCTGCTCGCTCTTCTCCTCCTCCTCCTTCTTCTTCTT
CTTCTTGCCGCCCGTTTTCTTCTTGCGTTCTCCAGACCCGGCACTCTCCT
CGTCTGTTGCCGGCCCATCCAAGCCAACGAGACCCCAGAGGCGTTCCAGG
GTGCACCCGTTGCTGCCCTCCAAAGCCATTTCCCGCTGGGCGGTGTCCCA
GACGCCCTGGAGGTCGAGGTCCCGCATCACCGCCATGTCAAAACAAAACC
CCTGAGAGAAAAAAAGAGAGCGAAGCCAACGGCAGGTGTCGATAAGGTGC
CGTCCGTGGCGATGAACATTCACGAAAGCGGTCTCTCGCTCTGCGCCGAA
CAACAAGGACTGTTGCTGTCGACAAAAAACGGTGTGTGTGGGGAGGGCGG
TTGTACAGGATAGTAGCGGGGTAGACGGAGCAGTGGCAGGTGGAGGAGGT
GGAGGAACCTCTTCGGTGTGTGTGATGTATGTATGATATCGGGGGAATGT
TCGGCACCGACGGGGAGCGAAAGAGGGTATACAGAAACTCCGTGATTACT
CTCGTGAGATTCCGTCTGCATATGTACTGCTGTGCTTTATACTGCTGATT
TGCACTATTACAGCAGTATTGTGTAAAGGCGAATCGTGTGCGTACGTCCA
ACACTGGGGTGCTGCGGAAAGGGGGAGACGGTAGCCAGCAGGGAGGTTGA
TATTGTGGGAGTTCAAATTGACCGTATCACAAGGGTGTAGAGGGCCAGGA
CGGTTGGAAGGGACCGTTTTGCAAGGGAGGGAAAGCAAGGAACAGATGGC
ATCAGTGATAAGGGCTCGGGTGTGTCCTCAGCGGCTGTCACACAGGAGTC
ACAATTAAAACTGGAGTATTTATCGTAGTCACACACCGTCTGCCCCTTGC
TCCACACGACAGTTTAGATGCCGTATCATAGACATAAGTCCAAAGGTGCC
TTTTGCATCAAAACTGCTGTGGTGGCAGCATCAAGCCTTCGGAGACAATT
ACTCCCCCAAACAAGAGCACAGCACATCATCAGACGATCGGAGGATTGTG
CGTATGAACTATGTATGTACCTGTAACTTATCTTTGATGCGGGTGCGTCG
CACTGATGAATGTCGCACCGTTTACTCATGTTTAGGAGCAGGACCGCCCG
TGACTGCTGTTTACGACTACGTGTAAGGTTCAACTCGACCAAAACCACCA
CCAGGCACCAGATATCAGACAAAAAAAGGTCGGCGCAACAGAGAACCAAC
GAACCTTTGGCGTTGGTATCCCTTGCTAACGCGTCCGTTCCTGCAAAAAA
AGAGGGTACGCTCGCTCTGAGGAAAAGACAGGCGTCGTAGCTGGCGGCTC
TGCCCGACGTGGCAGCCAGCAACAAACAACACACTGGTGCAGCAGCAGAG
CAAGAAGTCAACTCCAGTATCTCTCTCACACTTTCCGCCCTCTTCTCCTC
GATTCACGTGTTGAAAACCAGGACGAGCCTGCGAGGACTTGGGAGAAAAA
ACAACCTGAAGACAACGACACCTTTAGGGCACTACGCGACGCTGGTCTTC
CGCGCTGTCCATCGTTACGACGTTAG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig648:124431..126656-

>mRNA_P-littoralis_Contig648.20.1 ID=mRNA_P-littoralis_Contig648.20.1|Name=mRNA_P-littoralis_Contig648.20.1|organism=Pylaiella littoralis U1_48|type=CDS|length=159bp|location=Sequence derived from alignment at P-littoralis_Contig648:124431..126656- (Pylaiella littoralis U1_48)
ATGAGAAGTAGGAAACAAGAAAGAGACACTAGCCGGAAAATAGCGCAGGC
GGAGGACGAGCCTGCGAGGACTTGGGAGAAAAAACAACCTGAAGACAACG
ACACCTTTAGGGCACTACGCGACGCTGGTCTTCCGCGCTGTCCATCGTTA
CGACGTTAG
back to top