mRNA_P-littoralis_Contig648.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig648.1.1
Unique NamemRNA_P-littoralis_Contig648.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig648.1.1 vs. uniprot
Match: A0A6H5L4U9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4U9_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 9.290e-11
Identity = 66/184 (35.87%), Postives = 83/184 (45.11%), Query Frame = 2 
Query:  107 TNLPRAV------MSRWLGIRKSGASTAV--------DGTP----KQTSS--------PRAGRRRSSEETLDGAASRHSSQQSQAGSEDVDVAISGSGGGDVSAAAGCEVGGTNNPNRDLGDGSSAFESDWEVLEDMG-ELKGFQADGGSCGEHERADVIERPLSPGVDFSSAYMIDKDGGVGQ 577
            T LPR        MS+WLG+R+SGA +          D  P    KQ SS        PR GRRRSSEET+D   SR SS+  +   +    A  G                     R  GDG S    DWEV++    +  G  + GG           ERPLSPGVDFS+AYM+D++G  G+
Sbjct:   59 TTLPRPSSPSSRPMSKWLGLRRSGARSPTSSASALPPDDVPAFLGKQNSSVAACSTPTPRTGRRRSSEETVDADTSRRSSRDDEDAQKGAAPADHG---------------------RGPGDGVSDECCDWEVVQHTSADFSGLVSVGGEA-------EAERPLSPGVDFSAAYMVDREGEEGR 214
[Close]
BLAST of mRNA_P-littoralis_Contig648.1.1 vs. uniprot
Match: D7FIG2_ECTSI (EDR2_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIG2_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 1.860e-7
Identity = 62/171 (36.26%), Postives = 80/171 (46.78%), Query Frame = 2 
Query:  128 MSRWLGIRKSGA---STAVDGTP---------KQTSS--------PRAGRRRSSEETLDGAASRHSSQQSQAGSEDVDVAISGSGGGDVSAAAGCEVGGTNNPNRDLGDGSSAFESDWEVLEDMG-ELKGFQADGGSCGEHERADVIERPLSPGVDFSSAYMIDKDGGVGQ 577
            MS+WLG+R+SGA   ++A    P         KQ  S        PR GRRRSSEET+D   SR SS+  +   +    A  G G GD  +   C                     DWEV++    +L G     G  GE E     ERPLSPGVDFS+A M+D++G  G+
Sbjct:    1 MSKWLGLRRSGARSPTSAASALPPDDVPAFLGKQDGSGAAFSAPTPRTGRRRSSEETVDADTSRRSSRDDEDAQKGAAPADHGRGPGDSVSDECC---------------------DWEVVQHTSADLSGLV---GLDGEAE----AERPLSPGVDFSAACMVDREGEEGR 143
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig648.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L4U9_9PHAE9.290e-1135.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FIG2_ECTSI1.860e-736.26EDR2_C domain-containing protein n=1 Tax=Ectocarpu... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig648contigP-littoralis_Contig648:1223..1820 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FIG2
PFAMsDUF1336,START
Model size598
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.51e-08
EggNOG OGs28KK0@1|root,2QT1F@2759|Eukaryota
DescriptionProtein of unknown function (DUF1336)
Cds size471
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791348.7577786-CDS-P-littoralis_Contig648:1222..16931680791348.7577786-CDS-P-littoralis_Contig648:1222..1693Pylaiella littoralis U1_48CDSP-littoralis_Contig648 1223..1693 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791348.7722886-UTR-P-littoralis_Contig648:1693..18201680791348.7722886-UTR-P-littoralis_Contig648:1693..1820Pylaiella littoralis U1_48UTRP-littoralis_Contig648 1694..1820 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig648.1.1prot_P-littoralis_Contig648.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig648 1223..1693 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig648.1.1

>prot_P-littoralis_Contig648.1.1 ID=prot_P-littoralis_Contig648.1.1|Name=mRNA_P-littoralis_Contig648.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=157bp
MSRWLGIRKSGASTAVDGTPKQTSSPRAGRRRSSEETLDGAASRHSSQQS
QAGSEDVDVAISGSGGGDVSAAAGCEVGGTNNPNRDLGDGSSAFESDWEV
LEDMGELKGFQADGGSCGEHERADVIERPLSPGVDFSSAYMIDKDGGVGQ
LERDDDS
back to top

mRNA from alignment at P-littoralis_Contig648:1223..1820-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig648.1.1 ID=mRNA_P-littoralis_Contig648.1.1|Name=mRNA_P-littoralis_Contig648.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=598bp|location=Sequence derived from alignment at P-littoralis_Contig648:1223..1820- (Pylaiella littoralis U1_48)
CACAGAGCAAGGCGAAGGGGTGTAAGCACGAGAGAGGGGAGAGAAAGAGA
GGGAGCGGGAGAGAGGGACTTCGAGGCAATTGCCCTAAAGGAAATACTGT
AGCGCAACCAATCTGCCACGTGCTGTCATGTCGAGGTGGTTGGGAATACG
AAAGTCGGGGGCTTCTACCGCTGTCGATGGCACCCCCAAACAAACTTCTT
CTCCGAGAGCGGGCAGACGACGGTCAAGCGAGGAAACGCTCGACGGAGCA
GCGTCTCGACACTCGTCGCAGCAATCACAAGCTGGTAGCGAAGACGTCGA
TGTCGCTATTAGTGGCAGTGGTGGTGGTGATGTTTCAGCTGCTGCCGGCT
GCGAGGTAGGTGGTACGAACAATCCGAACCGTGACCTCGGAGACGGTTCT
TCTGCTTTCGAGTCCGACTGGGAGGTCCTCGAAGACATGGGCGAACTCAA
AGGCTTTCAAGCGGACGGCGGCAGCTGTGGCGAGCACGAGCGCGCGGACG
TTATAGAAAGGCCCCTCTCGCCGGGGGTCGACTTTAGCTCGGCGTACATG
ATTGATAAGGACGGGGGGGTGGGGCAGCTGGAGCGGGACGATGACTCT
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig648:1223..1820-

>mRNA_P-littoralis_Contig648.1.1 ID=mRNA_P-littoralis_Contig648.1.1|Name=mRNA_P-littoralis_Contig648.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=471bp|location=Sequence derived from alignment at P-littoralis_Contig648:1223..1820- (Pylaiella littoralis U1_48)
ATGTCGAGGTGGTTGGGAATACGAAAGTCGGGGGCTTCTACCGCTGTCGA
TGGCACCCCCAAACAAACTTCTTCTCCGAGAGCGGGCAGACGACGGTCAA
GCGAGGAAACGCTCGACGGAGCAGCGTCTCGACACTCGTCGCAGCAATCA
CAAGCTGGTAGCGAAGACGTCGATGTCGCTATTAGTGGCAGTGGTGGTGG
TGATGTTTCAGCTGCTGCCGGCTGCGAGGTAGGTGGTACGAACAATCCGA
ACCGTGACCTCGGAGACGGTTCTTCTGCTTTCGAGTCCGACTGGGAGGTC
CTCGAAGACATGGGCGAACTCAAAGGCTTTCAAGCGGACGGCGGCAGCTG
TGGCGAGCACGAGCGCGCGGACGTTATAGAAAGGCCCCTCTCGCCGGGGG
TCGACTTTAGCTCGGCGTACATGATTGATAAGGACGGGGGGGTGGGGCAG
CTGGAGCGGGACGATGACTCT
back to top