mRNA_P-littoralis_Contig647.9.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig647.9.1
Unique NamemRNA_P-littoralis_Contig647.9.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig647.9.1 vs. uniprot
Match: D7FJZ9_ECTSI (Putative c-myb-like transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJZ9_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 1.630e-20
Identity = 41/65 (63.08%), Postives = 50/65 (76.92%), Query Frame = 3 
Query:   99 RARSSFKLDPALWTVVERREICNAQTCAYRSESDHRSRWRHYHARCTHVHKFGPKLGMNFQHHQV 293
            + ++ F LDP LWTVVERR +C A+ CAYRSE DHR+R RHYHA C HVH+ G + GM FQHHQ+
Sbjct:  109 KTKTPFMLDPKLWTVVERRAVCTAKQCAYRSEEDHRARRRHYHALCNHVHQNGERKGMRFQHHQL 173
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BLAST of mRNA_P-littoralis_Contig647.9.1 vs. uniprot
Match: A0A6H5JMK3_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMK3_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 2.290e-20
Identity = 41/65 (63.08%), Postives = 50/65 (76.92%), Query Frame = 3 
Query:   99 RARSSFKLDPALWTVVERREICNAQTCAYRSESDHRSRWRHYHARCTHVHKFGPKLGMNFQHHQV 293
            + ++ F LDP LWTVVERR +C A+ CAYRSE DHR+R RHYHA C HVH+ G + GM FQHHQ+
Sbjct:  852 KTKTPFMLDPKLWTVVERRAVCTAKQCAYRSEEDHRARRRHYHALCNHVHQNGERKGMRFQHHQL 916
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig647.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FJZ9_ECTSI1.630e-2063.08Putative c-myb-like transcription factor n=1 Tax=E... [more]
A0A6H5JMK3_9PHAE2.290e-2063.08MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig647contigP-littoralis_Contig647:60498..62322 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size360
Hectar predicted targeting categoryother localisation
Exons2
Cds size273
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791347.6892016-UTR-P-littoralis_Contig647:60497..605821680791347.6892016-UTR-P-littoralis_Contig647:60497..60582Pylaiella littoralis U1_48UTRP-littoralis_Contig647 60498..60582 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791347.7107773-CDS-P-littoralis_Contig647:60582..606651680791347.7107773-CDS-P-littoralis_Contig647:60582..60665Pylaiella littoralis U1_48CDSP-littoralis_Contig647 60583..60665 -
1680791347.7240632-CDS-P-littoralis_Contig647:62132..623221680791347.7240632-CDS-P-littoralis_Contig647:62132..62322Pylaiella littoralis U1_48CDSP-littoralis_Contig647 62133..62322 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig647.9.1prot_P-littoralis_Contig647.9.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig647 60583..62322 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig647.9.1

>prot_P-littoralis_Contig647.9.1 ID=prot_P-littoralis_Contig647.9.1|Name=mRNA_P-littoralis_Contig647.9.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=91bp
STSPPSDARTTPNPVGEAAEEAATEAVAAAVEGGRGRRSSWTPRFGPSSS
GGRSVTLRRAPIGVRVTIDRAGATTTRGVPTSTSSGRSSA*
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mRNA from alignment at P-littoralis_Contig647:60498..62322-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig647.9.1 ID=mRNA_P-littoralis_Contig647.9.1|Name=mRNA_P-littoralis_Contig647.9.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1825bp|location=Sequence derived from alignment at P-littoralis_Contig647:60498..62322- (Pylaiella littoralis U1_48)
AGTACGTCCCCTCCCTCGGACGCGCGGACGACGCCGAATCCGGTTGGCGA
GGCAGCGGAGGAGGCGGCAACGGAGGCGGTGGCGGCGGCAGTGGAGGGAG
GGCGAGGTCGTCGTTCAAGCTGGACCCCGCGCTTTGGACCGTCGTCGAGC
GGCGGGAGATCTGTAACGCTCAGACGTGCGCCTATCGGAGGTGCGTTAAG
TGTGTGTGTGTAAAAGGAAAAGAGGCGTTTTAGGAGGGGGGGTTGTGTGT
GTGCGGTGTACGTGTGTTTGTGAAATTAATAGAGGCGTTTGGGGAGGGGG
GGGGGGTGTTTGTGTCTGCGCGTGTGTGTGAAAAATGAAAAAATGAGTCG
ATGGGGGGGAGTGGGGGTTGTGTGCGGTGTGTGTGTGTGTGTGTAAAATG
TGTGTATGTGCGTAAAATGAAGAGAGCCGTGCGGAAGTGGGGGTCTTATG
TGTGTGTGTGGGGGGGAGGGGCTGTTCGTGCGTGTGGGGGGGGAGGGTCG
TATGTATGTCTGTGTTTTTATCTCAGTGTGTGTGCTTTGGTTGATTCGAC
TACTCCTGTTCCGGTGTCAGCAGACAGAGACGGCTCTGTAGCTCGCTCGA
GCCGGTTCGATCAGAATGAGCAGAGGGAGCGAGTCGTCGACAACCAGAAG
TAAGCTTCATTTCGTAGGCCATGGCGGCTCTTCGTCCCGCCCCCCGCACT
TGGCGCTTTAATAATGCGGACTTGGCCCAGTGAACTGTTTGGCGTTACAG
TGAGCATTTTGGCGTTTTTTTTGGCGGGTTCGTTGGCGGGGTGCGGGGTC
TATCGCTCAAATGAACGACCATATGTCATGCACCGCCATGAGGTTATGAG
CCCCTCTCCCCCCTCTATCACACGGGTCATTGTATACTCGTATTTGAAGT
GTTTCATGTTATACATCATATCATTTTGATGCGATCGCCCTCTCTTCTTT
TTTTGGTGTAAAGCTTGGTTGCTGGCATAAAATGGGCGGCGCGGTGTCTA
GAGTCTAGATGGTCTACGGCTGCAGCTATACCGTAGGTCGCATAAGATAT
AACACCCCCTGGACCGATTTTCAAACCTCAATTACTCCACACCGCCAGCA
TCAAACTGTATGTTTTTGGAAAGCTCTCGACGAGATGGTTCCAACGCCGC
CCTTTCCGGCACCCACACTCTTTCCGCTGTAGAGTAATCGTTAGGGCTGG
GTATCGGTATCGATATGTAAGATATATCGCGGCGATCTATAGCGTAGGGA
TAGGGTATCGTGGGCACCGATATGCCCACGATATTTTTTAGGGGGTTCCG
TGAATTGAAAAGGGAATCTGTGGATCATTACATACCTCCGCGCCGAAGCA
CGCTGTGCTCGCGGGCTCGCTGCGATCGCTGACATCGTGATATCGGCTGC
GCCGATCGCGATATGTAATATATCGTTCTGCTGCGCCGATACCCAGCCCT
AGTGATTGTGCTACGACGTGAATACTGCCGAAGGAACCCTCCTCCCATCT
CAATCAGTGCGCAAATTATGTAGCCTAAATCGAACTCTTACATTCTTTGA
TACGTACCATATATACGATACGTATTGTTGTTTCTCACACTCACTGCTGT
GTGTTGCTATGGTATCATGCGTCCCTCGTTCTTTCTGCGTTTTATTTTTT
TGCGCAGTGAGAGTGACCATCGATCGCGCTGGCGCCACTACCACGCGAGG
TGTACCCACGTCCACAAGTTCGGGCCGAAGCTCGGCATGAATTTTCAGCA
CCACCAGGTGTTTGTGTGTTTACATATATGTGTGTTTGTGCGTAAAATGA
AAACAGGCGTTTGAGTCTGTCAAGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig647:60498..62322-

>mRNA_P-littoralis_Contig647.9.1 ID=mRNA_P-littoralis_Contig647.9.1|Name=mRNA_P-littoralis_Contig647.9.1|organism=Pylaiella littoralis U1_48|type=CDS|length=273bp|location=Sequence derived from alignment at P-littoralis_Contig647:60498..62322- (Pylaiella littoralis U1_48)
AGTACGTCCCCTCCCTCGGACGCGCGGACGACGCCGAATCCGGTTGGCGA
GGCAGCGGAGGAGGCGGCAACGGAGGCGGTGGCGGCGGCAGTGGAGGGAG
GGCGAGGTCGTCGTTCAAGCTGGACCCCGCGCTTTGGACCGTCGTCGAGC
GGCGGGAGATCTGTAACGCTCAGACGTGCGCCTATCGGAGTGAGAGTGAC
CATCGATCGCGCTGGCGCCACTACCACGCGAGGTGTACCCACGTCCACAA
GTTCGGGCCGAAGCTCGGCATGA
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