mRNA_P-littoralis_Contig647.5.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig647.5.1
Unique NamemRNA_P-littoralis_Contig647.5.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig647.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig647contigP-littoralis_Contig647:32543..33049 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size507
Hectar predicted targeting categoryother localisation
Exons1
Cds size303
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791347.8136008-UTR-P-littoralis_Contig647:32542..327461680791347.8136008-UTR-P-littoralis_Contig647:32542..32746Pylaiella littoralis U1_48UTRP-littoralis_Contig647 32543..32746 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791347.8264422-CDS-P-littoralis_Contig647:32746..330491680791347.8264422-CDS-P-littoralis_Contig647:32746..33049Pylaiella littoralis U1_48CDSP-littoralis_Contig647 32747..33049 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig647.5.1prot_P-littoralis_Contig647.5.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig647 32747..33049 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig647.5.1

>prot_P-littoralis_Contig647.5.1 ID=prot_P-littoralis_Contig647.5.1|Name=mRNA_P-littoralis_Contig647.5.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=101bp
MHSFVAHAGPCGAPRAYLWVRARNVVVCVSDRQHWHDVVRRLLSHVQSLL
ISSRNVKSEVFDAPPHFHVISAELGWMFANSSLFPANTTAPGFVAQVHIS
F
back to top

mRNA from alignment at P-littoralis_Contig647:32543..33049+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig647.5.1 ID=mRNA_P-littoralis_Contig647.5.1|Name=mRNA_P-littoralis_Contig647.5.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=507bp|location=Sequence derived from alignment at P-littoralis_Contig647:32543..33049+ (Pylaiella littoralis U1_48)
GCCGACATTGACGAGTTGCGCCACCAGGGGCAGAAAGTGATTCAGTTCGC
CTGTGCCCTTGGGTTCGACCCGGTTGAAGAGGTGGGTGTCCTTGTAATCA
TGTTGGCATGCGATATACAATGGAAATGATCTCTTCGTACGAGCGTTTGG
AGTGCCTTTCCTAACCTCCCCATGTCTTTTCGTTTGTGACGACGTACATA
CAAGATGCATTCGTTTGTTGCGCACGCCGGACCTTGCGGCGCACCTCGAG
CTTATCTCTGGGTGCGCGCCCGAAATGTAGTTGTCTGTGTTTCCGACCGA
CAGCATTGGCATGACGTGGTGCGTCGTCTTCTCAGCCATGTCCAAAGCCT
CCTCATCTCCTCTCGTAATGTCAAGTCCGAAGTATTCGATGCCCCACCTC
ATTTCCACGTGATTTCGGCCGAACTTGGGTGGATGTTTGCTAATTCGTCT
CTTTTCCCCGCCAACACCACAGCGCCCGGGTTCGTGGCTCAAGTGCACAT
TTCATTT
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig647:32543..33049+

>mRNA_P-littoralis_Contig647.5.1 ID=mRNA_P-littoralis_Contig647.5.1|Name=mRNA_P-littoralis_Contig647.5.1|organism=Pylaiella littoralis U1_48|type=CDS|length=303bp|location=Sequence derived from alignment at P-littoralis_Contig647:32543..33049+ (Pylaiella littoralis U1_48)
ATGCATTCGTTTGTTGCGCACGCCGGACCTTGCGGCGCACCTCGAGCTTA
TCTCTGGGTGCGCGCCCGAAATGTAGTTGTCTGTGTTTCCGACCGACAGC
ATTGGCATGACGTGGTGCGTCGTCTTCTCAGCCATGTCCAAAGCCTCCTC
ATCTCCTCTCGTAATGTCAAGTCCGAAGTATTCGATGCCCCACCTCATTT
CCACGTGATTTCGGCCGAACTTGGGTGGATGTTTGCTAATTCGTCTCTTT
TCCCCGCCAACACCACAGCGCCCGGGTTCGTGGCTCAAGTGCACATTTCA
TTT
back to top