mRNA_P-littoralis_Contig647.15.5 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig647.15.5 vs. uniprot
Match: D7FWU7_ECTSI (EF-hand, calcium binding motif n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWU7_ECTSI) HSP 1 Score: 743 bits (1918), Expect = 3.670e-247 Identity = 487/855 (56.96%), Postives = 548/855 (64.09%), Query Frame = 1
Query: 673 HAEFMRELASQNGLQLGCSHGQDERARHRREVERRIEIQDNCVRRPSVGQSKSLLKAKILGSIGGGPFELLRAFRKMHSGRGTVIDFKGFREAVKKLGLGLTEPEIMDFFRSFDADGSGGIDFAEFCEWVGAINDTGDXXXXXXXXXXXXXXX---------------FRPSSGGSDKSVSKRKMRDAQAKVKAASEKVPTRTMAENEHLLRQKILGSIGGGPFEFLRAFRKMHRGRGTVVDLDDFREAVTTFSLGLGEPEVVAFFNGFDADGSGGIDFEEFCAWVGGGDAGGGEE-CIISDSKPTNSG-GFSPFAPGGGXXXXXXXXXXXDEEEMTPAQKAQETVSRAFREQAAKMSSETLHKVLREKLISTVKPGGGTLLRTYHNLHRSGNVGEFRGVELADFKEAVHRYGMGVTDAQVERLFRRYDKDGSGDIDFHEFLKLIMYAEELAPEDHPARKRGDG------GAAEEGGDEGGDVRPLSPGWASRAAAAAAD-----DRDEQDGGRDTGDGKGDGSXXXXXXXXXXXXXXXXXXXPGAPPHANNGSGLRREGQQQHLCES-VLALSPATKGAKAEQKMNMIACVRNRWRHMLTAFRRRDPLRTGTVTFDEFQQALAENKAMQALGMGDISALASKHAAPRGRVDYPRFMRHLLIRNEGAGSARPAITGGVRKYSRQHNIISSSTPNDLRPTTSAGTRAAELRSTKSTGALAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNYPLRDRAISLCRELQPHIINAWKPLWRDLKAADQL-TAAKAKCSGSYNSXXXXXXXXXXXXXXXXXARSGTTTSYAGVSTGEVETHVFSAVLAR 3147
H EFMRELAS NGLQL CS G+DERARHRREV+RRI+IQ++CVRRPSVGQSK LLKAKILGSIGGGPFELLRAFRKM G GTVIDFKGFRE VKKL LGLTEPEI+DFFRSFDADGSGGIDF+EFCEW+ A +D+ D XXXXXXXXXXXX FRPSSGGSDKSVSKRKMRDAQAKVKAASE+VP RTMAENE LLRQKILGSIGGGPF+ LRAFRKMHRGRGTVVDL+DFREAV TFSLGLGEPEV AFF GFDADGSGGIDFEEFCAWVGG DA G + ++ DSK T S GF P G G D+ TPA +AQE V+RAFREQA GVEL DFKEAVHRYGMGVTDAQVE+LFRRYDKDGSGDIDFHEFLKLIMYAE+LAP++ G G A + G VRPL+PGW S AA AD + D+++ + XXXXX GA PH + +R+G+ + +CE VL SP T GAKAE+KM ACVR+RWRHML+AFRR DPLRTG VT DEF+Q L NKAMQ+L GD++ALA+KHA RGRVDYPRFMRHLL+ N AG RPA GGV + + + S+P T++ TR L+ + STGAL A XXXX LRDRAI++CRELQPHI++ WKPLW+D KAAD+ TA KA S + X R G SY GV G+VE HVF AVLAR
Sbjct: 56 HQEFMRELASHNGLQLRCSQGEDERARHRREVDRRIQIQEDCVRRPSVGQSKVLLKAKILGSIGGGPFELLRAFRKMTCGGGTVIDFKGFREGVKKLSLGLTEPEILDFFRSFDADGSGGIDFSEFCEWMEATDDSADEPGXXXXXXXXXXXXXXXXXXXTSKGREGGFRPSSGGSDKSVSKRKMRDAQAKVKAASERVPERTMAENEQLLRQKILGSIGGGPFQLLRAFRKMHRGRGTVVDLNDFREAVKTFSLGLGEPEVEAFFKGFDADGSGGIDFEEFCAWVGGTDAAGAADGFLLPDSKTTKSSPGFIPGVAGEGGWD--------DDTTKTPAMRAQERVTRAFREQAG-------------------------------------------GVELGDFKEAVHRYGMGVTDAQVEKLFRRYDKDGSGDIDFHEFLKLIMYAEDLAPQEPLETPVGLGTPPCPDAACDR---PRGGVRPLTPGWISDENAATADGTSNDNTDKRERNXXXXXXXXXXNFGNLPGKEXXXXXRSAGEGCGAGPHVAS----KRQGRSRPVCEQPVLGSSPVTNGAKAEEKMK--ACVRSRWRHMLSAFRRLDPLRTGAVTSDEFRQVLTANKAMQSLQKGDLAALAAKHAIARGRVDYPRFMRHLLLGNGPAGD-RPA--GGVGRDNDEDGGGRGSSPRHRSATSAKATRPG-LKVSMSTGALPAPGAISSPSPRRDRLHQLRPLDRQAARHGSGGGXXXXGNE----LRDRAIAICRELQPHIVSVWKPLWKDFKAADESSTAKKATGSRRHAQGACGGGXAGGASSRYRLPRDG---SYRGVCMGDVEAHVFRAVLAR 839
BLAST of mRNA_P-littoralis_Contig647.15.5 vs. uniprot
Match: A0A6H5KCV0_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCV0_9PHAE) HSP 1 Score: 81.6 bits (200), Expect = 2.230e-15 Identity = 38/42 (90.48%), Postives = 40/42 (95.24%), Query Frame = 1
Query: 922 VIDFKGFREAVKKLGLGLTEPEIMDFFRSFDADGSGGIDFAE 1047
VIDFKGFRE VKKL LGLTEPEI+DFFRSFDADGSGGIDF+E
Sbjct: 2 VIDFKGFREGVKKLNLGLTEPEILDFFRSFDADGSGGIDFSE 43
BLAST of mRNA_P-littoralis_Contig647.15.5 vs. uniprot
Match: A0A2D4BW89_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BW89_PYTIN) HSP 1 Score: 77.4 bits (189), Expect = 1.780e-10 Identity = 93/352 (26.42%), Postives = 142/352 (40.34%), Query Frame = 1
Query: 913 RGTVIDFKGFREAVKKLGLGLTEPEIMDFFRSFDADGSGGIDFAEFCEWVGAINDTGDXXXXXXXXXXXXXXXFRPSSGGSDKSVSKRKMRDAQ-AKVKAASEKVPTR-TMAENEHLLRQKILGSIGGGPFEFLRAFRKMHRGRGTVVDLDDFREAVTTFSLGLGEPEVVAFFNGFDADGSGGIDFEEFCAWVGGGDAGGGEECIISDSKPTNSGGFSPFAPGGGXXXXXXXXXXXDEEEMTPAQKAQETVSRAFRE-QAAKMSSETLHKVLREKLISTVKPGGGTLLRTYHNLHRSGNVGEFRGVELADFKEAVHRYGMGVTDAQVERLFRRYDKDGSGDIDFHEFLKLIM 1959
+ T I F A+ KLGL LT ++ + F FD D SG +D EF + V ++D F S K K K+ +++ A A + V + T+AE E +LR+KI F +AFR + G + D+F A+ T L L + F FD +GSG D +EF V D G + +D E ++ +A R E + S + + K +R+K+ + T + Y +S ++ + +F++ + G +T AQ E LFRRYD DGS DID EF I+
Sbjct: 417 KSTGITPTEFNVAMVKLGLKLTSRQLDELFELFDFDKSGDLDXNEFVQGV-MLDD------------------FSTKHWYSIKD--KHKVEESRRALYSMAVQSVXSSWTIAEIEQMLREKIEQRTSKSSDCFRQAFRIFKKVNG--IKPDEFHAALETIGLALDRSQSDILFQRFDKNGSGDXDLDEFIHGVLPPDYTGQQWVAAADEMHR-------------------------EADLRKKYEAVHNPERYMNEVEMESWSLDEIEKRIRDKIQQSTSKSSDTFRQAYRIFKKSNHI------TIDEFRDRLLALGFRLTRAQCEGLFRRYDTDGSNDIDLQEFCMRIL 714
BLAST of mRNA_P-littoralis_Contig647.15.5 vs. uniprot
Match: A0A078AAI2_STYLE (Ef hand family protein n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A078AAI2_STYLE) HSP 1 Score: 59.7 bits (143), Expect = 5.190e-5 Identity = 47/201 (23.38%), Postives = 92/201 (45.77%), Query Frame = 1
Query: 880 LLRAFRKMHSGRGTVIDFKGFREAVKKLGLGLTEPEIMDFFRSFDADGSGGIDFAEFCEWV---GAINDTGDXXXXXXXXXXXXXXXFRPSSGGSDKSVSKRKMRDAQAKVKAASEKVPTRTMAENEHLLRQKILGSIGGGPFEFLRAFRKMHRGRGTVVDLDDFREAVTTFSLGLGEPEVVAFFNGFDADGSGGIDFEEF 1473
L+++F+ +DF F+ A+ K+G+ + E ++ FFR++D++G+G +D+ EF + V + +G+ +S G ++ + R +RD + ++A +K+ R G IG R F+ M +D +F++AV F + + + + F FD + G ID++EF
Sbjct: 42 LIKSFKFFDFSNSGEVDFPTFQRAIAKMGVVVDEEDLEVFFRAYDSNGNGKLDYKEFSDIVFNRAQASGSGN------------------ASQGRQQASTYRGLRDPKPYIEAIRDKIKQRGAR-----------GIIG-----LQRVFKIMDDNNSKSLDKQEFKKAVRDFKIDIPDEYIDIIFAAFDLNRDGTIDYDEF 208 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig647.15.5 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig647.15.5 >prot_P-littoralis_Contig647.15.5 ID=prot_P-littoralis_Contig647.15.5|Name=mRNA_P-littoralis_Contig647.15.5|organism=Pylaiella littoralis U1_48|type=polypeptide|length=1112bp MSPVVDAEQPSPASVSAIAGGGDGDGGTGGGKFPKRQLSGDLKLRLARLPback to top mRNA from alignment at P-littoralis_Contig647:118104..158127+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig647.15.5 ID=mRNA_P-littoralis_Contig647.15.5|Name=mRNA_P-littoralis_Contig647.15.5|organism=Pylaiella littoralis U1_48|type=mRNA|length=40024bp|location=Sequence derived from alignment at P-littoralis_Contig647:118104..158127+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig647:118104..158127+ >mRNA_P-littoralis_Contig647.15.5 ID=mRNA_P-littoralis_Contig647.15.5|Name=mRNA_P-littoralis_Contig647.15.5|organism=Pylaiella littoralis U1_48|type=CDS|length=3336bp|location=Sequence derived from alignment at P-littoralis_Contig647:118104..158127+ (Pylaiella littoralis U1_48)back to top |