mRNA_P-littoralis_Contig646.46.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig646.46.1
Unique NamemRNA_P-littoralis_Contig646.46.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig646.46.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig646contigP-littoralis_Contig646:145809..147223 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size146
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size144
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791346.0280907-CDS-P-littoralis_Contig646:145808..1458811680791346.0280907-CDS-P-littoralis_Contig646:145808..145881Pylaiella littoralis U1_48CDSP-littoralis_Contig646 145809..145881 +
1680791346.038917-CDS-P-littoralis_Contig646:147150..1472211680791346.038917-CDS-P-littoralis_Contig646:147150..147221Pylaiella littoralis U1_48CDSP-littoralis_Contig646 147151..147221 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig646.46.1prot_P-littoralis_Contig646.46.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig646 145809..147221 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig646.46.1

>prot_P-littoralis_Contig646.46.1 ID=prot_P-littoralis_Contig646.46.1|Name=mRNA_P-littoralis_Contig646.46.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=48bp
GTIPKELGKLIALKELHLYQNNLSGPIPPELGKLAALKVLWLGQNQLT
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mRNA from alignment at P-littoralis_Contig646:145809..147223+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig646.46.1 ID=mRNA_P-littoralis_Contig646.46.1|Name=mRNA_P-littoralis_Contig646.46.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1415bp|location=Sequence derived from alignment at P-littoralis_Contig646:145809..147223+ (Pylaiella littoralis U1_48)
GGAACAATACCGAAGGAGTTAGGGAAGCTGATTGCGCTAAAGGAGCTTCA
TCTATACCAGAACAACCTCTCAGGTGAGAAAACCGAAAATGTCGTTTTGG
ATTCTAGATGTGTCGCACGCACGCATCGACAAGTAGGTGTTCTAGAAGCC
GGGGTTTTTTTTATTCCCGCTAAATTCGGTTTTTGCCTGTTCGCTACAGG
CCACATCCCGCCGGAGCTTGGAAATCTCGCAGCACTGAAAGTCCTCGACC
TTGTGGGAAACAAGTTGAGCGTGAGTCACTACGTACCAGGTACAAATTTT
ATGGTATTCCCCACAACAAATGTCAGGATGAATCGCGCTTACGCGTCAGC
GGGACCGATTTTCCAGAAGCGCGGGTGAGCAGGTGTTGCACAACGCCATC
TTTTTTTATAAATAATTTCATGTAGCTGCGCCGCTGTTCTTTTTGCAGGA
CCCATCCCGGCGGCGCTGGGAGCTCTCAGCGAGCTGGAGAAACTGTGGCT
CAGCGACAACAAGCTTACAGGTAATCGACGTTTCGGCAGGATTCTAGAAC
GTGGTTTTTCGGCTCCTAGAAAATCGGTCCCGCTGACGCATAGACGGGGT
TGATCCATGAAATCAGTTCGAAAATCATGTAAAACGACCGCCACAATTTA
AAAAAGGTACCTGTTAGCTGGTTGTTGTTGAGCTCCAGCGTCTTTAGCTC
TCTGAGAGCTCCCAGCTCAGGTGGAATGGGGCCTGCAAAAGGAAGAGCGA
ATACGAATTTAGCGGGGGAAAATAAATAAATGACCCGGCTTCTAGAACAC
CTACTCAACCATGCGTGTGCAGGACCGATGTTCCAGAAGCCTCATTTCGT
GGATGGGACACCTTGGTTCTAGAATGATGAGAATGCTGTCGTACGGCGAT
TCATTCATTATCATTCCGTACTGCTGTTTCGCGTTGTGCAGGCGCCATCC
CCAAGGAGCTTGGAGCTCTGAGGAAGTTGGAAGAGCTTGCGCTTAGCAAC
AACAAACTTACCGGTGAGGCATAATCAGCCGAGCTATTTTTGTAGAAATT
TGTGACATGGTCACTAGAACATGTGTCCTGCATACGCGTTATAACTTGAA
TATACTCTTACGCTTGCAGGCCCCATCCCACCGGAGCTGGGAAAGCTCGC
AGCACTGAAGGAACTCTGGCTTGGGCAAAACCAGCTAACTGTATAGGCGA
GTACGAAATTTCGCAATTTCGGAACTAGCGGAACATCTTTCGCTACGCAG
CGGGGAATTGTGGGTGAGCAGGTGTTCTAGAAGCCGGGATATTTTTTTCT
CTCCCGCTGCGTTATAACTTGAATATACTCTTACGCTTGCAGGCCCCATC
CCACCGGAGCTGGGAAAGCTCGCAGCACTGAAGGTACTCTGGCTTGGGCA
AAACCAGCTAACTGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig646:145809..147223+

>mRNA_P-littoralis_Contig646.46.1 ID=mRNA_P-littoralis_Contig646.46.1|Name=mRNA_P-littoralis_Contig646.46.1|organism=Pylaiella littoralis U1_48|type=CDS|length=144bp|location=Sequence derived from alignment at P-littoralis_Contig646:145809..147223+ (Pylaiella littoralis U1_48)
GGAACAATACCGAAGGAGTTAGGGAAGCTGATTGCGCTAAAGGAGCTTCA
TCTATACCAGAACAACCTCTCAGGCCCCATCCCACCGGAGCTGGGAAAGC
TCGCAGCACTGAAGGTACTCTGGCTTGGGCAAAACCAGCTAACT
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