mRNA_P-littoralis_Contig646.18.4 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig646.18.4
Unique NamemRNA_P-littoralis_Contig646.18.4
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig646.18.4 vs. uniprot
Match: D7G2I2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2I2_ECTSI)

HSP 1 Score: 176 bits (447), Expect = 2.090e-48
Identity = 102/254 (40.16%), Postives = 149/254 (58.66%), Query Frame = 1
Query:    1 VLHAVECVRPCEGVCRRHLVEDQTLDPECARHFGSVTRMAQRTLENSPDALVGD-DRWASANVRGFLKSPNGCVSGVLG------LRGHDDV-----LWSRRCRGVATNVDGSLGVSRCNECKDFYRRSVTRRTIQAAKHTPDRSTRIGDMSTGQKERTIHLINRDRKKKAAEIARLREELHVARKDFVKFNKKQGEALHELFMDPKSKEVLCTKLPKDSAERAIYEDQVRWNSTHGAAKGFRFHPTTLRIAIY 726
            +L+ V    PC+GV ++H+ ED  +    A  F S+ R AQ  LE++P    G+  RW +A V G L  P+G VSGVLG      + GH  V      W++ C GVAT   G   V RC  C+DF R ++  R   A+K    +S++   M++ QK+  +     D  ++    ARLRE +   RK+ V+   +QGEALH+  +D ++KEV+ ++LP+ S +R  YEDQV+WN++HG AKGFRFHP T+R+AIY
Sbjct:  178 LLNVVWHTLPCQGVSQQHVREDANMPAGAADVFPSLVRQAQWNLESNPTLPFGERGRWQNAFVEGLLSGPSG-VSGVLGTVGAHSVPGHGGVGGHKVFWAKGCVGVATPFQGLNSVPRCQGCRDFVREALRPRLENASKAESLKSSKNLYMTSAQKDHKLWSTAADLNRERNATARLRERIVSMRKECVRVPVEQGEALHKFLVDAETKEVIHSRLPQGSDQRYFYEDQVKWNTSHGKAKGFRFHPATMRLAIY 430          
BLAST of mRNA_P-littoralis_Contig646.18.4 vs. uniprot
Match: A0A6H5KCN5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCN5_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 2.120e-45
Identity = 92/232 (39.66%), Postives = 108/232 (46.55%), Query Frame = 1
Query:   37 GVCRRHLVEDQTLDPECARHFGSVTRMAQRTLENSPDALVGDDR--WASANVRGFLKSPNGCVSGVLGLRGHDDVLWSRRCRGVATNVDGSLGVSRCNECKDFYRRSVTRRTIQAAKHTPDRSTRIGDMSTGQKERTIHLINRDRKKKAAEIARLREELHVARKDFVKFNKKQGEALHELFMDPKSKEVLCTKLPKDSAERAIYEDQVRWNSTHGAAKGFRFHPTTLRIAIY 726
            GVCR H+ ED+ +  E    FG+V R A R LE  P  L   DR  W  A+VRG L  PNG VSGV+GL G +DVLWSR+C G AT   G  GV RC  CKDFYRR +T RT  AAKHTP + TR+ +MST QK                                                                       DQVRWN+  G  +GFR+HP TLRIA+Y
Sbjct:    6 GVCRSHMFEDKDVPLETVAAFGTVVRQALRILEKVPAILQPHDRDRWQHADVRGVLAGPNGHVSGVMGLVGREDVLWSRKCTGFATPSYGRTGVPRCTHCKDFYRRGMTPRTAHAAKHTPAKKTRVSEMSTAQK-----------------------------------------------------------------------DQVRWNTKEGKERGFRYHPQTLRIALY 166          
BLAST of mRNA_P-littoralis_Contig646.18.4 vs. uniprot
Match: A0A6H5KVF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF4_9PHAE)

HSP 1 Score: 169 bits (428), Expect = 1.930e-44
Identity = 108/265 (40.75%), Postives = 153/265 (57.74%), Query Frame = 1
Query:    1 VLHAVECVRPCEGVCRRHLVEDQTLDPECARHFGSVTRMAQRTLENSPDALVGD-DRWASANVRGFLKSPNGCVSGVLG-LRGHD----------DVLWSRRCRGVATNVDGSLGVSRCNECKDFYRRSVTRRTIQAAKHTPDRSTRIGDMSTGQK-ERTIHLI-NRDRK--KKAAEI-------ARLREELHVARKDFVKFNKKQGEALHELFMDPKSKEVLCTKLPKDSAERAIYEDQVRWNSTHGAAKGFRFHPTTLRIAIY 726
            +L+ V    PC+GV ++H+ ED  +    A  F S+ R AQR LE++P    G+  RW +A V G L  P+G VSGVLG + GH            V W++ C GVAT   G   V RC  C+ F R ++  R   A+K    +S++   M++ QK + TI L   RD K    AA +        RLRE +   RK+ V+   +QGEALH+  +D ++KEV+ ++LP+ S +R  YEDQV+WN++HG AKGFRFHP T+R+AIY
Sbjct:  300 LLNVVWHTLPCQGVSQQHVREDAKMPAGAADVFPSLVRQAQRNLESNPTLPFGERGRWQNAFVEGLLSGPSG-VSGVLGTVGGHSVPGHGGVGGHKVFWAKGCVGVATPFQGLNSVPRCQGCRGFVREALRPRLENASKAESLKSSKNIYMTSAQKVDETIVLAPQRDHKLWSTAASLNRERNATVRLRERIVSMRKECVRVPVEQGEALHKFLVDAETKEVIHSRLPQGSDQRYFYEDQVKWNTSHGKAKGFRFHPATMRLAIY 563          
BLAST of mRNA_P-littoralis_Contig646.18.4 vs. uniprot
Match: D7FZI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI2_ECTSI)

HSP 1 Score: 168 bits (425), Expect = 5.190e-44
Identity = 103/269 (38.29%), Postives = 151/269 (56.13%), Query Frame = 1
Query:    1 VLHAVECVRPCEGVCRRHLVEDQTLDPECARHFGSVTRMAQRTLENSPDALVGD-DRWASANVRGFLKSPNGCVSGVLG-LRGHD----------DVLWSRRCRGVATNVDGSLGVSRCNECKDFYRRSVTRRTIQAAKHTPDRSTRIGDMSTGQK---------ERTIHLINR------DRKKKAAEIARLREELHVARKDFVKFNKKQGEALHELFMDPKSKEVLCTKLPKDSAERAIYEDQVRWNSTHGAAKGFRFHPTTLRIAIY 726
            +L+ V    PC+GV ++H+ ED  +    A  F S+ R AQR LE++P    G+  RW +A V G L  P+G VSGVLG + GH            V W++ C GVAT   G   V RC  C+ F R ++  R   A+K    +S++   M+  QK         +R   + ++      D  ++    ARLRE +   RK+ V+   +QGEALH+  +D ++KEV+ ++LP+ S +R  YEDQV+WN++HG AKGFRFHP T+R+AIY
Sbjct:  205 LLNVVWYTLPCQGVSQQHVREDAKMPAGAADVFPSLVRQAQRNLESNPTLPFGERGRWQNAFVEGLLSGPSG-VSGVLGTVGGHSVPGHGGVGGHKVFWAKGCVGVATPFQGLNSVPRCQGCRGFVREALRPRLQNASKAESLKSSKNIYMTRAQKVDVTIVSAPQRVPRITSKLWSTAADLNRERTTTARLRERIVSMRKECVRVPVEQGEALHKFLVDAETKEVIHSRLPQGSDQRYFYEDQVKWNTSHGKAKGFRFHPATMRLAIY 472          
BLAST of mRNA_P-littoralis_Contig646.18.4 vs. uniprot
Match: D7G5R1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5R1_ECTSI)

HSP 1 Score: 97.8 bits (242), Expect = 9.080e-21
Identity = 45/79 (56.96%), Postives = 62/79 (78.48%), Query Frame = 1
Query:  490 RLREELHVARKDFVKFNKKQGEALHELFMDPKSKEVLCTKLPKDSAERAIYEDQVRWNSTHGAAKGFRFHPTTLRIAIY 726
            RL++ +  ARK+  + N +QG ALHEL +DP+S+ +   KLP+DSA+RAI+EDQ+RWN+   ++KGFRFHP TLRIAIY
Sbjct:   12 RLQDRVLAARKESERINDQQGAALHELLLDPESRTIFEKKLPEDSAQRAIFEDQLRWNTRMASSKGFRFHPATLRIAIY 90          
BLAST of mRNA_P-littoralis_Contig646.18.4 vs. uniprot
Match: A0A6H5L5M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5M0_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 5.630e-5
Identity = 20/28 (71.43%), Postives = 26/28 (92.86%), Query Frame = 1
Query:  643 EDQVRWNSTHGAAKGFRFHPTTLRIAIY 726
            +DQV+WN++HG AKGFRFHP T+R+AIY
Sbjct:  303 QDQVKWNTSHGKAKGFRFHPATMRLAIY 330          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig646.18.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7G2I2_ECTSI2.090e-4840.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KCN5_9PHAE2.120e-4539.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KVF4_9PHAE1.930e-4440.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZI2_ECTSI5.190e-4438.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G5R1_ECTSI9.080e-2156.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L5M0_9PHAE5.630e-571.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig646contigP-littoralis_Contig646:42719..43856 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size729
Hectar predicted targeting categoryother localisation
Exons3
Cds size726
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791346.7728364-CDS-P-littoralis_Contig646:42719..428001680791346.7728364-CDS-P-littoralis_Contig646:42719..42800Pylaiella littoralis U1_48CDSP-littoralis_Contig646 42720..42800 -
1680791346.7839854-CDS-P-littoralis_Contig646:43032..432451680791346.7839854-CDS-P-littoralis_Contig646:43032..43245Pylaiella littoralis U1_48CDSP-littoralis_Contig646 43033..43245 -
1680791346.7936058-CDS-P-littoralis_Contig646:43424..438561680791346.7936058-CDS-P-littoralis_Contig646:43424..43856Pylaiella littoralis U1_48CDSP-littoralis_Contig646 43425..43856 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig646.18.4prot_P-littoralis_Contig646.18.4Pylaiella littoralis U1_48polypeptideP-littoralis_Contig646 42720..43856 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig646.18.4

>prot_P-littoralis_Contig646.18.4 ID=prot_P-littoralis_Contig646.18.4|Name=mRNA_P-littoralis_Contig646.18.4|organism=Pylaiella littoralis U1_48|type=polypeptide|length=242bp
VLHAVECVRPCEGVCRRHLVEDQTLDPECARHFGSVTRMAQRTLENSPDA
LVGDDRWASANVRGFLKSPNGCVSGVLGLRGHDDVLWSRRCRGVATNVDG
SLGVSRCNECKDFYRRSVTRRTIQAAKHTPDRSTRIGDMSTGQKERTIHL
INRDRKKKAAEIARLREELHVARKDFVKFNKKQGEALHELFMDPKSKEVL
CTKLPKDSAERAIYEDQVRWNSTHGAAKGFRFHPTTLRIAIY
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mRNA from alignment at P-littoralis_Contig646:42719..43856-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig646.18.4 ID=mRNA_P-littoralis_Contig646.18.4|Name=mRNA_P-littoralis_Contig646.18.4|organism=Pylaiella littoralis U1_48|type=mRNA|length=1138bp|location=Sequence derived from alignment at P-littoralis_Contig646:42719..43856- (Pylaiella littoralis U1_48)
GTTCTGCACGCGGTGGAATGTGTACGGCCTTGTGAGGGAGTCTGCCGACG TCATCTCGTGGAGGACCAGACGTTGGATCCCGAATGCGCAAGGCATTTCG GAAGTGTGACGCGCATGGCTCAACGCACACTCGAGAACAGTCCGGACGCT CTCGTTGGCGACGACCGCTGGGCCTCTGCGAACGTAAGGGGATTCCTCAA AAGCCCCAACGGCTGTGTTTCGGGCGTACTGGGCCTGCGGGGTCACGACG ATGTGCTGTGGTCAAGGCGCTGTCGTGGTGTCGCTACGAACGTGGATGGT AGCTTAGGGGTGTCGCGATGTAATGAGTGCAAGGATTTCTACCGCCGTTC GGTGACCAGGCGAACGATCCAAGCTGCGAAGCACACTCCGGACAGATCCA CCAGGATCGGAGACATGAGCACTGGCCAAAAGGTGAGAAAACCAACTTAA TGCAAGCATGCCGAAGTTTACTGGGATAGGTCCTCTCTGAATGCTCTCTT CATCTATATGGCGCATTCCGTCCTGTAATGCAGTATATACTTGCGGGATT TTGTGGTGCATTTGTTGAAGTGTATCCGCACGTCCGCCATGCGTCCCACA AACTTCCTCAGGAGAGGACGATCCATCTGATCAACCGGGACAGGAAGAAG AAAGCGGCGGAGATTGCGCGACTGCGGGAGGAGCTGCACGTGGCCCGGAA GGATTTCGTCAAGTTCAATAAAAAACAAGGCGAGGCTCTCCACGAGCTCT TCATGGACCCCAAGTCCAAGGAGGTGCTCTGCACCAAGCTCCCGAAGGAT AGCGCCGAACGAGCGATATACGAGGTACGCCGTTTTCTAGCCTCTATCGT TGACTCTGTCGTCGTTTGGAGTCTGTTTTATGTTTGGCTGCATGTACTTA TGGTGATGCGGGTTCAACTTTTACGACACCAGGTATTCTTATTGCTTATA GCATACGAATGCATGCTTGTGTTTTGTTTTGTTTGCCGTTATTTATTTAT TTTCATCTTTCCAACGTATCGTGTGCTTTTGGCGTCCTTGCCTTGCTTTC GAACAGGACCAGGTGCGGTGGAACTCGACGCACGGAGCTGCGAAGGGGTT CAGGTTCCATCCGACTACCCTGAGGATCGCCATCTACA
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Coding sequence (CDS) from alignment at P-littoralis_Contig646:42719..43856-

>mRNA_P-littoralis_Contig646.18.4 ID=mRNA_P-littoralis_Contig646.18.4|Name=mRNA_P-littoralis_Contig646.18.4|organism=Pylaiella littoralis U1_48|type=CDS|length=726bp|location=Sequence derived from alignment at P-littoralis_Contig646:42719..43856- (Pylaiella littoralis U1_48)
GTTCTGCACGCGGTGGAATGTGTACGGCCTTGTGAGGGAGTCTGCCGACG
TCATCTCGTGGAGGACCAGACGTTGGATCCCGAATGCGCAAGGCATTTCG
GAAGTGTGACGCGCATGGCTCAACGCACACTCGAGAACAGTCCGGACGCT
CTCGTTGGCGACGACCGCTGGGCCTCTGCGAACGTAAGGGGATTCCTCAA
AAGCCCCAACGGCTGTGTTTCGGGCGTACTGGGCCTGCGGGGTCACGACG
ATGTGCTGTGGTCAAGGCGCTGTCGTGGTGTCGCTACGAACGTGGATGGT
AGCTTAGGGGTGTCGCGATGTAATGAGTGCAAGGATTTCTACCGCCGTTC
GGTGACCAGGCGAACGATCCAAGCTGCGAAGCACACTCCGGACAGATCCA
CCAGGATCGGAGACATGAGCACTGGCCAAAAGGAGAGGACGATCCATCTG
ATCAACCGGGACAGGAAGAAGAAAGCGGCGGAGATTGCGCGACTGCGGGA
GGAGCTGCACGTGGCCCGGAAGGATTTCGTCAAGTTCAATAAAAAACAAG
GCGAGGCTCTCCACGAGCTCTTCATGGACCCCAAGTCCAAGGAGGTGCTC
TGCACCAAGCTCCCGAAGGATAGCGCCGAACGAGCGATATACGAGGACCA
GGTGCGGTGGAACTCGACGCACGGAGCTGCGAAGGGGTTCAGGTTCCATC
CGACTACCCTGAGGATCGCCATCTAC
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