mRNA_P-littoralis_Contig646.12.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig646.12.1
Unique NamemRNA_P-littoralis_Contig646.12.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig646.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig646contigP-littoralis_Contig646:37481..38064 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size273
Hectar predicted targeting categoryother localisation
Exons2
Cds size270
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791346.509108-CDS-P-littoralis_Contig646:37480..375131680791346.509108-CDS-P-littoralis_Contig646:37480..37513Pylaiella littoralis U1_48CDSP-littoralis_Contig646 37481..37513 +
1680791346.528371-CDS-P-littoralis_Contig646:37825..380621680791346.528371-CDS-P-littoralis_Contig646:37825..38062Pylaiella littoralis U1_48CDSP-littoralis_Contig646 37826..38062 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig646.12.1prot_P-littoralis_Contig646.12.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig646 37481..38062 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig646.12.1

>prot_P-littoralis_Contig646.12.1 ID=prot_P-littoralis_Contig646.12.1|Name=mRNA_P-littoralis_Contig646.12.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=90bp
PRDDDNGQGQLGTASSRTQALLDAHADKLLADPEAIVQRLVDAVDRLFTE
HYRELIPLWDMTKGLAATRKVILDEWTSLVDILAATSKGK
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mRNA from alignment at P-littoralis_Contig646:37481..38064+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig646.12.1 ID=mRNA_P-littoralis_Contig646.12.1|Name=mRNA_P-littoralis_Contig646.12.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=584bp|location=Sequence derived from alignment at P-littoralis_Contig646:37481..38064+ (Pylaiella littoralis U1_48)
CCTCGTGACGACGACAACGGACAGGGTCAGCTGGTCAGTTTCGATTCTGC
CACATCCAAAACTCATACTCCCGTAGCCCTCGTCTGTGGCGGTTTTTGGG
ATCGGAGTTCAGGCGTGTTCGTTTGACAAAGGATTGAAAAAGATTTATCT
CGTTAAGTCTCTGCCATGTTGTCGGTTCGCCGCACACCGTCTTCTGTCAC
ATTCGAGCTCATGGTGGTACTTGCGAATAGGGCTCTATATTTCTGTGAGT
TCAGGACAACATCTCTCAAATGCCTGCCCTCGGCATGTCCCACCCCTAAA
CCAGCTTTGCCTCGTGCTTTCTTTGGCTGTACCTTTCAACGGCAGGGGAC
CGCCAGCTCCCGGACGCAGGCCTTGTTGGATGCCCACGCAGACAAGCTGC
TGGCGGACCCGGAAGCCATCGTTCAGCGTCTCGTGGATGCCGTCGATCGA
CTTTTCACCGAGCACTACAGAGAGTTGATTCCCCTTTGGGATATGACGAA
GGGTCTGGCGGCCACGCGCAAGGTAATCCTCGACGAGTGGACATCATTGG
TTGACATCCTCGCAGCAACGAGCAAGGGGAAAGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig646:37481..38064+

>mRNA_P-littoralis_Contig646.12.1 ID=mRNA_P-littoralis_Contig646.12.1|Name=mRNA_P-littoralis_Contig646.12.1|organism=Pylaiella littoralis U1_48|type=CDS|length=270bp|location=Sequence derived from alignment at P-littoralis_Contig646:37481..38064+ (Pylaiella littoralis U1_48)
CCTCGTGACGACGACAACGGACAGGGTCAGCTGGGGACCGCCAGCTCCCG
GACGCAGGCCTTGTTGGATGCCCACGCAGACAAGCTGCTGGCGGACCCGG
AAGCCATCGTTCAGCGTCTCGTGGATGCCGTCGATCGACTTTTCACCGAG
CACTACAGAGAGTTGATTCCCCTTTGGGATATGACGAAGGGTCTGGCGGC
CACGCGCAAGGTAATCCTCGACGAGTGGACATCATTGGTTGACATCCTCG
CAGCAACGAGCAAGGGGAAA
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